BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00041616
         (450 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006473595.1| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31
emb|CBI19832.3| unnamed protein product [Vitis vinifera]              139   3e-31
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi...   139   3e-31
ref|XP_006435103.1| hypothetical protein CICLE_v10000322mg [Citr...   138   7e-31
gb|EOY05619.1| Pentatricopeptide repeat (PPR) superfamily protei...   138   7e-31
ref|XP_002302000.2| pentatricopeptide repeat-containing family p...   138   9e-31
ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containi...   135   6e-30
gb|EXB53614.1| hypothetical protein L484_005164 [Morus notabilis]     134   1e-29
ref|XP_006342194.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28
ref|XP_004301492.1| PREDICTED: pentatricopeptide repeat-containi...   130   2e-28
ref|XP_004238467.1| PREDICTED: pentatricopeptide repeat-containi...   130   2e-28
ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containi...   127   2e-27
ref|XP_003535453.2| PREDICTED: pentatricopeptide repeat-containi...   123   2e-26
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ...   123   2e-26
ref|XP_006306802.1| hypothetical protein CARUB_v10008344mg [Caps...   122   6e-26
ref|NP_173907.1| pentatricopeptide repeat-containing protein [Ar...   121   1e-25
ref|XP_002893429.1| pentatricopeptide repeat-containing protein ...   120   1e-25
ref|XP_002521664.1| pentatricopeptide repeat-containing protein,...   120   2e-25
ref|XP_006415862.1| hypothetical protein EUTSA_v10006846mg [Eutr...   119   3e-25

>ref|XP_006473595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like isoform X1 [Citrus sinensis]
           gi|568839239|ref|XP_006473596.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g25360-like isoform X2 [Citrus sinensis]
          Length = 799

 Score =  140 bits (354), Expect = 1e-31
 Identities = 76/145 (52%), Positives = 93/145 (64%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R+VHAH ++SGF+PR HI+NRLID+Y K   L  AR LFD     + D +A T+LI AYS
Sbjct: 35  RSVHAHMISSGFKPREHIINRLIDIYCKSLKLVYARTLFDEIP--QPDIVARTTLIAAYS 92

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G+   AR++F  TPL  RDTVFYNAMIT YS  SDGHAAI ++R M  D V  D++TF
Sbjct: 93  ASGNVKLAREMFNKTPLKMRDTVFYNAMITAYSHNSDGHAAIELFRDMRRDNVKPDNFTF 152

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E  QC Q+HC V
Sbjct: 153 TSVLSALALIVE-EEKQCMQMHCTV 176


>emb|CBI19832.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score =  139 bits (351), Expect = 3e-31
 Identities = 75/145 (51%), Positives = 97/145 (66%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R VHAH +ASGF+PR +ILNRLID+Y K  DL SA  LFD    R+ D +A T+LI A+S
Sbjct: 33  RTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEI--RQPDIVARTTLIAAHS 90

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           + G+ + AR+IF +TPL  RDTV YNAMITGYS  +DG  AI ++R ++ +G   D++TF
Sbjct: 91  SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 150

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E  QC+QIHCAV
Sbjct: 151 TSVLGALALIVEDE-KQCQQIHCAV 174



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
 Frame = +2

Query: 2   RRLRAVHAHFLASGFRPRAHILNRLIDLYSKFGDLP---------SARRLFDATSSRRSD 154
           ++ + +H   + SG      +LN L+ ++ K    P         +AR+LFD  + R  D
Sbjct: 165 KQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTER--D 222

Query: 155 SIAATSLITAYSADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRM 334
            ++ T++I  Y  +G  DAARQ  +   +  +  V +NAMI+GY        A+ ++R+M
Sbjct: 223 ELSWTTMIAGYVRNGELDAARQFLDG--MTEKLVVAWNAMISGYVHHGFFLEALEMFRKM 280

Query: 335 MTDGVPCDSYTFT 373
              G+  D +T+T
Sbjct: 281 YLLGIQWDEFTYT 293


>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  139 bits (351), Expect = 3e-31
 Identities = 75/145 (51%), Positives = 97/145 (66%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R VHAH +ASGF+PR +ILNRLID+Y K  DL SA  LFD    R+ D +A T+LI A+S
Sbjct: 35  RTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEI--RQPDIVARTTLIAAHS 92

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           + G+ + AR+IF +TPL  RDTV YNAMITGYS  +DG  AI ++R ++ +G   D++TF
Sbjct: 93  SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 152

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E  QC+QIHCAV
Sbjct: 153 TSVLGALALIVEDE-KQCQQIHCAV 176



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
 Frame = +2

Query: 2   RRLRAVHAHFLASGFRPRAHILNRLIDLYSKFGDLP---------SARRLFDATSSRRSD 154
           ++ + +H   + SG      +LN L+ ++ K    P         +AR+LFD  + R  D
Sbjct: 167 KQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTER--D 224

Query: 155 SIAATSLITAYSADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRM 334
            ++ T++I  Y  +G  DAARQ  +   +  +  V +NAMI+GY        A+ ++R+M
Sbjct: 225 ELSWTTMIAGYVRNGELDAARQFLDG--MTEKLVVAWNAMISGYVHHGFFLEALEMFRKM 282

Query: 335 MTDGVPCDSYTFT 373
              G+  D +T+T
Sbjct: 283 YLLGIQWDEFTYT 295


>ref|XP_006435103.1| hypothetical protein CICLE_v10000322mg [Citrus clementina]
           gi|557537225|gb|ESR48343.1| hypothetical protein
           CICLE_v10000322mg [Citrus clementina]
          Length = 799

 Score =  138 bits (348), Expect = 7e-31
 Identities = 74/145 (51%), Positives = 94/145 (64%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R+VHAH ++SGF+PR HI+NRLID+Y K  +L  AR+LFD     + D +A T+LI AYS
Sbjct: 35  RSVHAHMISSGFKPRGHIINRLIDIYCKSLNLVYARKLFDEIP--QPDIVARTTLIAAYS 92

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A  +   AR++F  TPL  RDTVFYNAMIT YS  S+GHAAI ++R M  D V  D++TF
Sbjct: 93  ASDNVKLAREMFNKTPLKKRDTVFYNAMITAYSHNSNGHAAIELFRDMRRDDVKPDNFTF 152

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E  QC Q+HC V
Sbjct: 153 TSVLSALALIVE-EEKQCMQMHCTV 176



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
 Frame = +2

Query: 17  VHAHFLASGFRPRAHILNRLIDLYSKFGDLP---------SARRLFDATSSRRSDSIAAT 169
           +H   + SG      +LN LI +Y K    P         +ARR+FD    R  D ++ T
Sbjct: 172 MHCTVVKSGTGLFTSVLNALISVYVKCVSSPFVSSRSLMGAARRVFDEMPER--DELSWT 229

Query: 170 SLITAYSADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGV 349
           +++T Y  +   DAAR+  +   ++    V +NA+I+GY        A+ ++R+M+  G+
Sbjct: 230 TMMTGYVKNDYLDAAREFLDG--MSENVGVAWNALISGYVHRELYQEALEMFRKMLMLGI 287

Query: 350 PCDSYTFT 373
             D +T+T
Sbjct: 288 QLDEFTYT 295


>gb|EOY05619.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
           cacao]
          Length = 788

 Score =  138 bits (348), Expect = 7e-31
 Identities = 70/145 (48%), Positives = 95/145 (65%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           +A+H+  +ASGF PR HILNRLID+Y K   +  AR LFD   +   D ++ TSL+ AYS
Sbjct: 33  KAIHSRMIASGFHPRGHILNRLIDVYCKSSRIDYARNLFDKIPA--PDIVSRTSLVLAYS 90

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
             G+   AR++FE TPL+ RD+VFYNAMITG+SR  DGHA I ++R+M+ D    D++TF
Sbjct: 91  TSGNIKKAREMFEETPLSIRDSVFYNAMITGFSRNEDGHACIKLFRQMLRDEFRPDNFTF 150

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E+ QC+Q+HC V
Sbjct: 151 TSVLGGLALVVDREM-QCKQMHCTV 174



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 40/145 (27%), Positives = 70/145 (48%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           + +H     SG      +LN L+ +Y     +  AR+LFD  S +  D ++ T+++T Y 
Sbjct: 168 KQMHCTVFKSGTVFVTSVLNALVSVYVNCTLMFEARKLFDEMSEK--DELSWTTMVTGYV 225

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
            +   DAAR++ +   +  +  V +NAMI+GY        A+ ++R+M   G+  D +T+
Sbjct: 226 KNDELDAARELVDG--MNEKLAVAWNAMISGYVHHGRYEEALDMFRKMYFMGIKMDEFTY 283

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            +L Q  Q+H  V
Sbjct: 284 TSIISGCAHAGLFQLGQ--QVHAYV 306


>ref|XP_002302000.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550344162|gb|EEE81273.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 797

 Score =  138 bits (347), Expect = 9e-31
 Identities = 76/145 (52%), Positives = 90/145 (62%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R VHAH +ASGF+PR HILNRLID+YSK   L  AR LFD     + D +A T+LI AYS
Sbjct: 33  RPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIP--QPDIVARTTLIAAYS 90

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G    +R+IF  TPL  RD+VFYNAMIT YS   DGHAAI ++  M  D    D+YTF
Sbjct: 91  AAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTF 150

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E   C+Q+HCAV
Sbjct: 151 TSVLGALALVAEKE-KHCQQLHCAV 174



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
 Frame = +2

Query: 2   RRLRAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSA---------RRLFDATSSRRSD 154
           +  + +H   + SG      +LN LI  Y K    PSA         R+LFD   +R  D
Sbjct: 165 KHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNR--D 222

Query: 155 SIAATSLITAYSADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRM 334
            ++ T++IT Y  +   DAA++    T  + +  V +NAMI+GY+       A  ++R+M
Sbjct: 223 ELSWTTIITGYVKNNDLDAAKEFLNGT--SKKLGVAWNAMISGYAHRGLYLEAFEMFRKM 280

Query: 335 MTDGVPCDSYTFT 373
           +   +  D +TFT
Sbjct: 281 IMSKIQLDEFTFT 293


>ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  136 bits (343), Expect = 2e-30
 Identities = 72/145 (49%), Positives = 94/145 (64%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           RAVHAH +ASGF+PR H LNRL+++Y K  +L  AR+LF+   +   D+IA T+LITAY 
Sbjct: 33  RAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPN--PDAIARTTLITAYC 90

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G+ +  R+IF  TPL  RD+VFYNAMITGY+   DGH+A+ ++R M  D    D +TF
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTF 150

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E  QC Q+HCAV
Sbjct: 151 TSVLSALVLFVGNE-QQCGQMHCAV 174


>ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  135 bits (340), Expect = 6e-30
 Identities = 71/145 (48%), Positives = 94/145 (64%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           RAVHAH +ASGF+PR H LNRL+++Y K  ++  AR+LF+   +   D+IA T+LITAY 
Sbjct: 33  RAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPN--PDAIARTTLITAYC 90

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G+ +  R+IF  TPL  RD+VFYNAMITGY+   DGH+A+ ++R M  D    D +TF
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTF 150

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E  QC Q+HCAV
Sbjct: 151 TSVLSALVLFVGNE-QQCGQMHCAV 174


>gb|EXB53614.1| hypothetical protein L484_005164 [Morus notabilis]
          Length = 800

 Score =  134 bits (337), Expect = 1e-29
 Identities = 73/145 (50%), Positives = 91/145 (62%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R +HAH  ASGFRPR HI+NRLID+Y K  +L  AR LFD     + D +A T+L+ AYS
Sbjct: 34  RTIHAHMTASGFRPRGHIVNRLIDVYCKCSNLSYARNLFDEIP--QPDVVARTTLVAAYS 91

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G+   AR+IF   PL  RDT+ YNAMITGYSR +DG AA  ++R M  DGV  D +T 
Sbjct: 92  AAGNLKLAREIFCGIPLDMRDTICYNAMITGYSRNNDGFAAFQLFRDMRWDGVTPDDFTL 151

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           +            E  QC+Q+HCAV
Sbjct: 152 SSVLSALGIVTEDE-RQCKQMHCAV 175



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
 Frame = +2

Query: 2   RRLRAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPS----------ARRLFDATSSRRS 151
           R+ + +H   + SG      +LN L   Y K     S          AR+LFD    +  
Sbjct: 166 RQCKQMHCAVVKSGLGFVTSVLNSLASFYVKCAAAASSLSSVLLMAAARKLFDEMVEK-- 223

Query: 152 DSIAATSLITAYSADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRR 331
           D ++ T++IT Y      DAAR++ E   +  +  V +NAMI+GY        A+ ++R+
Sbjct: 224 DELSWTTIITGYVRCNDLDAARKLLEG--MNEKIGVAWNAMISGYVHHDRFQEALKMFRK 281

Query: 332 MMTDGVPCDSYTFT 373
           M + G+  D +T+T
Sbjct: 282 MQSQGILQDEFTYT 295


>ref|XP_006342194.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Solanum tuberosum]
          Length = 804

 Score =  130 bits (328), Expect = 1e-28
 Identities = 69/146 (47%), Positives = 91/146 (62%)
 Frame = +2

Query: 8   LRAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAY 187
           LR++HA+ + SGF PR+HILN LI++Y K   L  A+ LFD     + D +A T++I AY
Sbjct: 43  LRSIHANMITSGFSPRSHILNNLINIYCKNSGLVYAKHLFDRIP--QPDVVARTTMIAAY 100

Query: 188 SADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYT 367
           SA G    AR++F+ TPL+ RDTV YNAMITGYS  +DGHAAI ++  M       D YT
Sbjct: 101 SASGEPKLAREVFDKTPLSIRDTVCYNAMITGYSHNNDGHAAIKLFLDMRWKNFQPDEYT 160

Query: 368 FTXXXXXXXXXXPLELTQCRQIHCAV 445
           +T            E+  CRQ+HCAV
Sbjct: 161 YTSVLAALALIADHEM-HCRQLHCAV 185


>ref|XP_004301492.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like, partial [Fragaria vesca subsp. vesca]
          Length = 800

 Score =  130 bits (327), Expect = 2e-28
 Identities = 69/145 (47%), Positives = 90/145 (62%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R +HAH +ASGF PR HILNRLID+Y K  +L  A  LFD   +   D +A T+L++AYS
Sbjct: 41  RTIHAHMIASGFSPRGHILNRLIDVYCKSNNLRYALHLFDEIPN--PDIVARTTLVSAYS 98

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
             G    AR++F  TP++ RDTV YNAMITGYS+  DG+AA+ ++R M   G   D +TF
Sbjct: 99  GVGDVTLARRVFRETPVSMRDTVSYNAMITGYSQNRDGNAAVELFREMRRGGFRPDHFTF 158

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E  QC Q+HCA+
Sbjct: 159 TSVLSGLALIVEDE-RQCGQLHCAI 182



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
 Frame = +2

Query: 2   RRLRAVHAHFLASGFRPRAHILNRLIDLYSKFGD----LPSARRLFDATSSRRSDSIAAT 169
           R+   +H   + SG      + N L+ +Y K       + +AR++FD    R  D ++ T
Sbjct: 173 RQCGQLHCAIVKSGVLLATSVSNALVSVYVKCASSLVVVAAARKVFDEMDKR--DELSWT 230

Query: 170 SLITAYSADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGV 349
           ++IT Y  +   D ARQ+ +   +  +  V +NAMI+GY      H A+ ++R M   G+
Sbjct: 231 TMITGYVRNEDLDGARQLLDG--MDDKLEVAWNAMISGYVHHGFCHEALQLFREMHLMGI 288

Query: 350 PCDSYTFT 373
             D YT+T
Sbjct: 289 RQDEYTYT 296


>ref|XP_004238467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Solanum lycopersicum]
          Length = 804

 Score =  130 bits (326), Expect = 2e-28
 Identities = 70/146 (47%), Positives = 91/146 (62%)
 Frame = +2

Query: 8   LRAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAY 187
           LR++HA+ + SGFRPR+HILN LI++Y K   L  A+ LFD     + D +A T++I AY
Sbjct: 43  LRSIHANMITSGFRPRSHILNSLINIYCKNSGLVYAKHLFDRIP--QPDVVARTTMIAAY 100

Query: 188 SADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYT 367
           SA G    AR+IF+ TPL+ RDTV YNAMITGYS  + GHAAI ++  M       D YT
Sbjct: 101 SASGEPKLAREIFDKTPLSFRDTVCYNAMITGYSHNNHGHAAIKLFLDMRWKNFQPDEYT 160

Query: 368 FTXXXXXXXXXXPLELTQCRQIHCAV 445
           +T            E+  CRQ+HCAV
Sbjct: 161 YTSVLAALALIADHEM-HCRQMHCAV 185


>ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
           gi|449504088|ref|XP_004162249.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  127 bits (319), Expect = 2e-27
 Identities = 72/145 (49%), Positives = 88/145 (60%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R VH H +ASGF+ R HI+NRLID+Y K  D   AR+LFD     + D IA T+LITAYS
Sbjct: 33  RTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIP--QPDVIARTTLITAYS 90

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G+   AR+IF  TPL  RDTVFYNAMITGYS  +DGH+AI ++R M       D +TF
Sbjct: 91  ALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTF 150

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
                        +  QC Q+H  V
Sbjct: 151 ASVLSASTLIF-YDERQCGQMHGTV 174


>ref|XP_003535453.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 787

 Score =  123 bits (309), Expect = 2e-26
 Identities = 67/145 (46%), Positives = 92/145 (63%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           RAVHAH L SGF+P   I+NRLID Y K  ++P AR LFD     + D +AAT++++AYS
Sbjct: 21  RAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIP--KPDIVAATTMLSAYS 78

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G+   A Q+F +TP++ RDTV YNAMIT +S + DGHAA+ ++ +M   G   D +TF
Sbjct: 79  AAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTF 138

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           +            E T C+Q+HC V
Sbjct: 139 SSVLGALSLIAD-EETHCQQLHCEV 162


>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479792|gb|AES60995.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  123 bits (309), Expect = 2e-26
 Identities = 65/145 (44%), Positives = 91/145 (62%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           RAVHAH L SGF+P   ILNRLI++Y K  ++  AR+LFD     + D +A T+L++AYS
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIP--KPDIVARTTLLSAYS 82

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           + G+   A+Q+F +TPL  RDTV YNAMIT YS  +DGHAA++++ +M   G   D +TF
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           +            E   C+ +HC V
Sbjct: 143 SSVLSALSLIAD-EERHCQMLHCEV 166


>ref|XP_006306802.1| hypothetical protein CARUB_v10008344mg [Capsella rubella]
           gi|482575513|gb|EOA39700.1| hypothetical protein
           CARUB_v10008344mg [Capsella rubella]
          Length = 790

 Score =  122 bits (305), Expect = 6e-26
 Identities = 66/144 (45%), Positives = 88/144 (61%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           RAVHA+ +  GF+PRAHILNRLID+Y K  +L  AR LFD  S    D IA T++++ Y 
Sbjct: 34  RAVHANIITFGFQPRAHILNRLIDVYCKSSELRYARELFDEISE--PDKIARTTMVSGYC 91

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G    AR +FE T ++ RDTV YNAMITG+S  +DG++AI ++ +M  +G   D++TF
Sbjct: 92  ASGDITLARGVFEETSVSMRDTVMYNAMITGFSHNNDGYSAIKLFCKMKHEGFQPDNFTF 151

Query: 371 TXXXXXXXXXXPLELTQCRQIHCA 442
                        E  QC Q H A
Sbjct: 152 ASVLAALALVVE-EEKQCLQFHAA 174



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
 Frame = +2

Query: 20  HAHFLASGFRPRAHILNRLIDLYSKFGDLPS----ARRLFDATSSRRSDSIAATSLITAY 187
           HA  L SG      + N L+ +YSK    PS    AR++FD    +  D  + T++IT Y
Sbjct: 172 HAAALKSGAGSITSVSNALVSVYSKCASSPSLLHSARKVFDEMPEK--DERSWTTMITGY 229

Query: 188 SADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYT 367
             +G  D  +++ E     +   V YNAMI+GY        A+ + RRM++ G+  D +T
Sbjct: 230 VKNGCFDLGKELLEVMD-ENMKVVAYNAMISGYVNRGLYQEALEMVRRMVSSGIELDEFT 288

Query: 368 FTXXXXXXXXXXPLELTQCRQIHCAV 445
           +            L+L   +Q+H  V
Sbjct: 289 YPSVIRACATAGLLQLG--KQVHAYV 312


>ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g25360 gi|11067273|gb|AAG28801.1|AC079374_4
           hypothetical protein [Arabidopsis thaliana]
           gi|332192491|gb|AEE30612.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  121 bits (303), Expect = 1e-25
 Identities = 65/144 (45%), Positives = 88/144 (61%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           RAVH + +  GF+PRAHILNRLID+Y K  +L  AR+LFD  S    D IA T++++ Y 
Sbjct: 34  RAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISE--PDKIARTTMVSGYC 91

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G    AR +FE  P+  RDTV YNAMITG+S  +DG++AI+++ +M  +G   D++TF
Sbjct: 92  ASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTF 151

Query: 371 TXXXXXXXXXXPLELTQCRQIHCA 442
                        E  QC Q H A
Sbjct: 152 ASVLAGLALVADDE-KQCVQFHAA 174



 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
 Frame = +2

Query: 20  HAHFLASGFRPRAHILNRLIDLYSKFGDLPS----ARRLFDATSSRRSDSIAATSLITAY 187
           HA  L SG      + N L+ +YSK    PS    AR++FD    +  D  + T+++T Y
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEK--DERSWTTMMTGY 229

Query: 188 SADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYT 367
             +G  D   ++ E     +   V YNAMI+GY        A+ + RRM++ G+  D +T
Sbjct: 230 VKNGYFDLGEELLEGMD-DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFT 288

Query: 368 FTXXXXXXXXXXPLELTQCRQIHCAV 445
           +            L+L   +Q+H  V
Sbjct: 289 YPSVIRACATAGLLQLG--KQVHAYV 312


>ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297339271|gb|EFH69688.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 790

 Score =  120 bits (302), Expect = 1e-25
 Identities = 64/144 (44%), Positives = 88/144 (61%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           RAVH + +  GF+P AHILNRLID+Y K  +L  AR+LFD  S    D IA T++++ Y 
Sbjct: 34  RAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISE--PDKIARTTMVSGYC 91

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G    AR +FE TP++ RDTV YNAMITG+S  +DG++AI+++ +M  +G   D +T+
Sbjct: 92  ASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTY 151

Query: 371 TXXXXXXXXXXPLELTQCRQIHCA 442
                        E  QC Q H A
Sbjct: 152 ASVLAGLALVVDDE-KQCVQFHAA 174



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
 Frame = +2

Query: 20  HAHFLASGFRPRAHILNRLIDLYSKFGDLPS----ARRLFDATSSRRSDSIAATSLITAY 187
           HA  L SG      + N L+ +YS+    PS    AR++FD    +  D  + T+++T Y
Sbjct: 172 HAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEK--DERSWTTMMTGY 229

Query: 188 SADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYT 367
             +G  D  +++ +     +   V YNAMI+GY        A+ + RRM++ G+  D +T
Sbjct: 230 VKNGCFDLGKELLKGMD-ENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFT 288

Query: 368 FTXXXXXXXXXXPLELTQCRQIHCAV 445
           +            L+L   +Q+H  V
Sbjct: 289 YPSVIRACANARLLQLG--KQVHAYV 312


>ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539055|gb|EEF40651.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 574

 Score =  120 bits (300), Expect = 2e-25
 Identities = 66/145 (45%), Positives = 84/145 (57%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           R +HAH +ASGF+P  H LNRLI +Y K   L  AR LFD     + D +A T+LI AYS
Sbjct: 37  RTIHAHMIASGFKPHGHTLNRLIYIYCKSSKLSYARSLFDEIP--QPDIVARTTLINAYS 94

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G    A+++F  TPL  RD V YNAMIT YS  +DGHAAI ++  M  +    D++TF
Sbjct: 95  ATGHLKLAKEMFYETPLIMRDAVIYNAMITAYSHNNDGHAAIELFCDMKRNDFRPDNFTF 154

Query: 371 TXXXXXXXXXXPLELTQCRQIHCAV 445
           T            E   C+Q+HC V
Sbjct: 155 TSVLGALALVAENE-RHCQQLHCTV 178



 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
 Frame = +2

Query: 2   RRLRAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPS---------ARRLFDATSSRRSD 154
           R  + +H   + SG      +LN LI +Y K    PS         ARRLFD    R  D
Sbjct: 169 RHCQQLHCTVVKSGTWFVTSVLNALISVYVKCASSPSVISSSLMGAARRLFDEMPVR--D 226

Query: 155 SIAATSLITAYSADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRM 334
            ++ T++IT Y  +   DAAR++F+   +  +  V +NAMI+GY        A+ ++R+M
Sbjct: 227 ELSWTTIITGYVKNDDLDAAREVFDG--MREKLVVVWNAMISGYMHRGLYQEALEMFRKM 284

Query: 335 MTDGVPCDSYTFT 373
              G+  D +T+T
Sbjct: 285 YLAGLKLDEFTYT 297


>ref|XP_006415862.1| hypothetical protein EUTSA_v10006846mg [Eutrema salsugineum]
           gi|557093633|gb|ESQ34215.1| hypothetical protein
           EUTSA_v10006846mg [Eutrema salsugineum]
          Length = 787

 Score =  119 bits (299), Expect = 3e-25
 Identities = 65/144 (45%), Positives = 86/144 (59%)
 Frame = +2

Query: 11  RAVHAHFLASGFRPRAHILNRLIDLYSKFGDLPSARRLFDATSSRRSDSIAATSLITAYS 190
           RAVH + +  GF+PRAHILNRLID+Y K  +L  AR+LFD  S    D IA T++++ Y 
Sbjct: 34  RAVHGNIITFGFQPRAHILNRLIDVYCKSSELHYARQLFDEISE--PDKIARTTMVSGYC 91

Query: 191 ADGSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTF 370
           A G    AR +FE TPL+ RDTV YNAMITG++   DG++AI+++  M   G   D++TF
Sbjct: 92  ASGDVTLARCVFEETPLSMRDTVMYNAMITGFTHNHDGYSAINMFCEMKRQGFKPDNFTF 151

Query: 371 TXXXXXXXXXXPLELTQCRQIHCA 442
                        E   C Q H A
Sbjct: 152 ASVLAGLALVVE-EEKDCVQFHAA 174



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
 Frame = +2

Query: 20  HAHFLASGFRPRAHILNRLIDLYSKFGD-LPSARRLFDATSSRRSDSIAATSLITAYSAD 196
           HA  + SG      +LN L+ +YSK    L SAR++FD    +  D  + T++IT Y  +
Sbjct: 172 HAAAMKSGAGYITSVLNALVSVYSKCASMLSSARKVFDEIPEK--DERSWTTMITGYVKN 229

Query: 197 GSHDAARQIFESTPLASRDTVFYNAMITGYSRASDGHAAISVYRRMMTDGVPCDSYTFTX 376
           G  D+ + + E      R  V YNAMI+GY        A+ + RRM++ G+  D +T+  
Sbjct: 230 GFFDSGQDLLEGMDENMR-LVAYNAMISGYVHRGLYQEALEMVRRMVSSGIELDEFTYPS 288

Query: 377 XXXXXXXXXPLELTQCRQIHCAV 445
                     L+L   +Q+H  V
Sbjct: 289 LIRACATARLLQLG--KQVHAYV 309