BLASTX nr result
ID: Zingiber24_contig00041309
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00041309
(335 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB86239.1| hypothetical protein L484_005950 [Morus notabilis] 120 2e-25
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi... 118 7e-25
ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi... 117 2e-24
ref|XP_006351408.1| PREDICTED: pentatricopeptide repeat-containi... 116 4e-24
emb|CBI28813.3| unnamed protein product [Vitis vinifera] 116 4e-24
ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containi... 116 4e-24
ref|XP_006475804.1| PREDICTED: pentatricopeptide repeat-containi... 115 5e-24
ref|XP_006364895.1| PREDICTED: pentatricopeptide repeat-containi... 115 5e-24
ref|XP_006450982.1| hypothetical protein CICLE_v10010823mg [Citr... 115 5e-24
gb|AEP33771.1| organelle transcript processing 82, partial [Thla... 115 5e-24
ref|XP_006306854.1| hypothetical protein CARUB_v10008399mg [Caps... 115 8e-24
ref|NP_172286.1| chloroplast RNA editing factor [Arabidopsis tha... 115 8e-24
gb|AEP33773.1| organelle transcript processing 82, partial [Lobu... 115 8e-24
gb|AEP33768.1| organelle transcript processing 82, partial [Nast... 115 8e-24
gb|AEP33761.1| organelle transcript processing 82, partial [Cruc... 115 8e-24
gb|AEP33758.1| organelle transcript processing 82, partial [Barb... 115 8e-24
ref|XP_002892433.1| pentatricopeptide repeat-containing protein ... 115 8e-24
ref|XP_002324235.2| pentatricopeptide repeat-containing family p... 114 1e-23
gb|AEP33769.1| organelle transcript processing 82, partial [Olim... 114 1e-23
gb|EOY30985.1| Pentatricopeptide repeat-containing protein, puta... 114 2e-23
>gb|EXB86239.1| hypothetical protein L484_005950 [Morus notabilis]
Length = 737
Score = 120 bits (300), Expect = 2e-25
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T +RIVKNLRVC CH A +LIS+++NREII RDR RFHHFK
Sbjct: 668 HHSEKLAIAFGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 727
Query: 247 NGACSCNGFW 276
NG+CSCN +W
Sbjct: 728 NGSCSCNDYW 737
>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 118 bits (296), Expect = 7e-25
Identities = 51/70 (72%), Positives = 62/70 (88%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T +RI+KNLRVC+ CH A +LIS+++NREII RDR RFHHFK
Sbjct: 665 HHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFK 724
Query: 247 NGACSCNGFW 276
+G+CSCN +W
Sbjct: 725 DGSCSCNDYW 734
>ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 117 bits (292), Expect = 2e-24
Identities = 52/70 (74%), Positives = 61/70 (87%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T +RIVKNLRVC CH AI+LIS+++NREII RDR RFHHFK
Sbjct: 669 HHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFK 728
Query: 247 NGACSCNGFW 276
+G+CSC +W
Sbjct: 729 DGSCSCMDYW 738
>ref|XP_006351408.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Solanum tuberosum]
Length = 401
Score = 116 bits (290), Expect = 4e-24
Identities = 55/84 (65%), Positives = 62/84 (73%), Gaps = 3/84 (3%)
Frame = +1
Query: 34 LHRTLSHEKS---CHHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNR 204
LH EK C HSERLAIAFGL+ TK T++RIVKNLRVC+ CH ++ISR+YNR
Sbjct: 318 LHNVSDEEKEIALCEHSERLAIAFGLLKTKAPTVIRIVKNLRVCRDCHEVTKIISRIYNR 377
Query: 205 EIIVRDRYRFHHFKNGACSCNGFW 276
EIIVRDR RFH F NGACSC FW
Sbjct: 378 EIIVRDRVRFHRFVNGACSCRDFW 401
>emb|CBI28813.3| unnamed protein product [Vitis vinifera]
Length = 500
Score = 116 bits (290), Expect = 4e-24
Identities = 51/71 (71%), Positives = 59/71 (83%)
Frame = +1
Query: 64 CHHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHF 243
CHHSE+LAIAFGLI T P T +RI KNLRVC CH A +LIS++YNREIIVRDR RFHHF
Sbjct: 430 CHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHF 489
Query: 244 KNGACSCNGFW 276
++G+CSC FW
Sbjct: 490 RDGSCSCMDFW 500
>ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 116 bits (290), Expect = 4e-24
Identities = 51/71 (71%), Positives = 59/71 (83%)
Frame = +1
Query: 64 CHHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHF 243
CHHSE+LAIAFGLI T P T +RI KNLRVC CH A +LIS++YNREIIVRDR RFHHF
Sbjct: 570 CHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHF 629
Query: 244 KNGACSCNGFW 276
++G+CSC FW
Sbjct: 630 RDGSCSCMDFW 640
>ref|XP_006475804.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Citrus sinensis]
Length = 736
Score = 115 bits (289), Expect = 5e-24
Identities = 51/70 (72%), Positives = 60/70 (85%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIA+GLISTKP T +RIVKNLRVC CH A +LIS+++NREII RDR RFHHFK
Sbjct: 667 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 726
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 727 DGNCSCNDYW 736
>ref|XP_006364895.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Solanum tuberosum]
Length = 731
Score = 115 bits (289), Expect = 5e-24
Identities = 60/108 (55%), Positives = 69/108 (63%), Gaps = 17/108 (15%)
Frame = +1
Query: 4 IYAMVDEFIHLHRTLSH-----------------EKSCHHSERLAIAFGLISTKPSTLLR 132
IY M+DE L H EK HSE+LAIAFGLISTKP T LR
Sbjct: 624 IYKMLDEVDRLLEMAGHAPDTSEVHYEMDEEWKEEKLNQHSEKLAIAFGLISTKPGTTLR 683
Query: 133 IVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFKNGACSCNGFW 276
IVKNLRVC CH A ++IS+++NREII RDR RFHHFKNG+CSC +W
Sbjct: 684 IVKNLRVCGNCHEATKMISKIFNREIIARDRNRFHHFKNGSCSCLDYW 731
>ref|XP_006450982.1| hypothetical protein CICLE_v10010823mg [Citrus clementina]
gi|557554208|gb|ESR64222.1| hypothetical protein
CICLE_v10010823mg [Citrus clementina]
Length = 736
Score = 115 bits (289), Expect = 5e-24
Identities = 51/70 (72%), Positives = 60/70 (85%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIA+GLISTKP T +RIVKNLRVC CH A +LIS+++NREII RDR RFHHFK
Sbjct: 667 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 726
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 727 DGNCSCNDYW 736
>gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 115 bits (289), Expect = 5e-24
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +L+S++Y REII RDR RFHHF+
Sbjct: 604 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFR 663
Query: 247 NGACSCNGFW 276
+G CSCN FW
Sbjct: 664 DGVCSCNDFW 673
>ref|XP_006306854.1| hypothetical protein CARUB_v10008399mg [Capsella rubella]
gi|482575565|gb|EOA39752.1| hypothetical protein
CARUB_v10008399mg [Capsella rubella]
Length = 740
Score = 115 bits (287), Expect = 8e-24
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +LIS++Y REII RDR RFHHF+
Sbjct: 671 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 730
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 731 DGVCSCNDYW 740
>ref|NP_172286.1| chloroplast RNA editing factor [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g08070 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15
[Arabidopsis thaliana] gi|332190118|gb|AEE28239.1|
chloroplast RNA editing factor [Arabidopsis thaliana]
Length = 741
Score = 115 bits (287), Expect = 8e-24
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +LIS++Y REII RDR RFHHF+
Sbjct: 672 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 731
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 732 DGVCSCNDYW 741
>gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 115 bits (287), Expect = 8e-24
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +LIS++Y REII RDR RFHHF+
Sbjct: 626 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 685
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 686 DGVCSCNDYW 695
>gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 115 bits (287), Expect = 8e-24
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +LIS++Y REII RDR RFHHF+
Sbjct: 601 HHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 660
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 661 DGVCSCNDYW 670
>gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 115 bits (287), Expect = 8e-24
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +LIS++Y REII RDR RFHHF+
Sbjct: 641 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 700
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 701 DGVCSCNDYW 710
>gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 115 bits (287), Expect = 8e-24
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +LIS++Y REII RDR RFHHF+
Sbjct: 641 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 700
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 701 DGVCSCNDYW 710
>ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297338275|gb|EFH68692.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 741
Score = 115 bits (287), Expect = 8e-24
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +LIS++Y REII RDR RFHHF+
Sbjct: 672 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 731
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 732 DGVCSCNDYW 741
>ref|XP_002324235.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550317719|gb|EEF02800.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 736
Score = 114 bits (286), Expect = 1e-23
Identities = 50/70 (71%), Positives = 60/70 (85%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T +RI+KNLRVC CH A +LIS+++NREII RDR RFHHFK
Sbjct: 667 HHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 726
Query: 247 NGACSCNGFW 276
+G+CSC +W
Sbjct: 727 DGSCSCKDYW 736
>gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 114 bits (286), Expect = 1e-23
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1
Query: 67 HHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRFHHFK 246
HHSE+LAIAFGLISTKP T L IVKNLRVC+ CH A +LIS++Y REII RDR RFHHF+
Sbjct: 641 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 700
Query: 247 NGACSCNGFW 276
+G CSCN +W
Sbjct: 701 DGECSCNDYW 710
>gb|EOY30985.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
cacao]
Length = 194
Score = 114 bits (284), Expect = 2e-23
Identities = 51/74 (68%), Positives = 60/74 (81%)
Frame = +1
Query: 55 EKSCHHSERLAIAFGLISTKPSTLLRIVKNLRVCKYCHIAIELISRLYNREIIVRDRYRF 234
E HHSE+LAIAFGLISTKP T +RIVKNLRVC CH A +LIS+++N+EII RDR RF
Sbjct: 121 EALSHHSEKLAIAFGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNKEIIARDRNRF 180
Query: 235 HHFKNGACSCNGFW 276
HHFK+G CSC +W
Sbjct: 181 HHFKDGFCSCKDYW 194