BLASTX nr result

ID: Zingiber24_contig00039589 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00039589
         (370 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310804.1| hypothetical protein POPTR_0007s12820g [Popu...    70   4e-10
ref|XP_002521594.1| conserved hypothetical protein [Ricinus comm...    68   1e-09
ref|XP_006854532.1| hypothetical protein AMTR_s00030p00041740 [A...    58   1e-06

>ref|XP_002310804.1| hypothetical protein POPTR_0007s12820g [Populus trichocarpa]
           gi|222853707|gb|EEE91254.1| hypothetical protein
           POPTR_0007s12820g [Populus trichocarpa]
          Length = 272

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 45/116 (38%)
 Frame = +2

Query: 152 RYHLSSIQSTVLVCQIRSQGLSFQIWPAVSSLVTLLD-FCPSAL---------------- 280
           ++++ SI+STV++ Q  SQGLSFQ+WPA ++L TLLD    S L                
Sbjct: 43  QHYIHSIKSTVVIRQFPSQGLSFQLWPAATTLFTLLDNHSTSPLSPILDTISNGSTHGAL 102

Query: 281 ----------------------------LPHVLPNLRFNVDANSDSVAARGGSVDV 364
                                       LPHV+PNL+FNVDAN+D +A+RGG+VDV
Sbjct: 103 KILELGSGTGIVGIAAAVTLGAKVTVTDLPHVIPNLQFNVDANADVLASRGGAVDV 158


>ref|XP_002521594.1| conserved hypothetical protein [Ricinus communis]
           gi|223539272|gb|EEF40865.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 268

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 43/114 (37%)
 Frame = +2

Query: 152 RYHLSSIQSTVLVCQIRSQGLSFQIWPAVSSLVTLLD--------------FCPSAL--- 280
           R+++ SI ST++V Q+ SQGLSFQ+WPA ++L TLLD              F P      
Sbjct: 46  RHYIPSINSTIMVRQLPSQGLSFQLWPAATTLFTLLDRHRSDPTTGPLSPIFSPDCTPNI 105

Query: 281 --------------------------LPHVLPNLRFNVDANSDSVAARGGSVDV 364
                                     LPHV+ NL+FNVDAN+D++A  GG+V+V
Sbjct: 106 LELGSGTGLVGIAAAVTLAANVTVTDLPHVISNLQFNVDANADTMALFGGTVNV 159


>ref|XP_006854532.1| hypothetical protein AMTR_s00030p00041740 [Amborella trichopoda]
           gi|548858218|gb|ERN15999.1| hypothetical protein
           AMTR_s00030p00041740 [Amborella trichopoda]
          Length = 276

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 33/104 (31%)
 Frame = +2

Query: 155 YHLSSIQSTVLVCQIRSQGLSFQIWPAVSSLVTLLDFCPSAL------------------ 280
           +HL + +S   + Q+ S+GLSFQ+WPA S+LV+ LD     +                  
Sbjct: 42  HHLRTTKSCFTIRQLPSEGLSFQLWPAASALVSFLDDDAKVVVKGKRILELGSGTGMVGV 101

Query: 281 -------------LPHVLPNLRFNVDANSDS--VAARGGSVDVR 367
                        LPHVLPNL FN DAN  +  V  RGGS+ V+
Sbjct: 102 AAAMLGAHVTMTDLPHVLPNLSFNADANQRAVEVTGRGGSLHVQ 145


Top