BLASTX nr result
ID: Zingiber24_contig00039290
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00039290
(514 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002463122.1| hypothetical protein SORBIDRAFT_02g038230 [S... 98 1e-18
ref|XP_002317931.1| muts homolog 2 family protein [Populus trich... 98 1e-18
ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [... 96 6e-18
ref|NP_001146301.1| DNA mismatch repair protein MSH2 [Zea mays] ... 95 8e-18
ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 ... 95 8e-18
gb|ACL53653.1| unknown [Zea mays] 95 8e-18
ref|XP_006843758.1| hypothetical protein AMTR_s00007p00236950 [A... 94 2e-17
gb|EOY20929.1| MUTS isoform 2 [Theobroma cacao] 94 2e-17
gb|EXC28067.1| DNA mismatch repair protein Msh2 [Morus notabilis] 94 2e-17
ref|XP_006440914.1| hypothetical protein CICLE_v10018746mg [Citr... 93 3e-17
emb|CBI15412.3| unnamed protein product [Vitis vinifera] 93 4e-17
gb|EEC78891.1| hypothetical protein OsI_19262 [Oryza sativa Indi... 93 4e-17
ref|XP_003562321.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch... 92 5e-17
ref|XP_006485749.1| PREDICTED: DNA mismatch repair protein MSH2-... 92 7e-17
ref|XP_004962511.1| PREDICTED: DNA mismatch repair protein MSH2-... 91 2e-16
ref|XP_006655161.1| PREDICTED: DNA mismatch repair protein MSH2-... 86 7e-15
gb|EMS48756.1| DNA mismatch repair protein MSH2 [Triticum urartu] 86 7e-15
dbj|BAK07130.1| predicted protein [Hordeum vulgare subsp. vulgare] 85 1e-14
gb|EMJ10274.1| hypothetical protein PRUPE_ppa000981mg [Prunus pe... 84 2e-14
ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein MSH2-... 84 3e-14
>ref|XP_002463122.1| hypothetical protein SORBIDRAFT_02g038230 [Sorghum bicolor]
gi|241926499|gb|EER99643.1| hypothetical protein
SORBIDRAFT_02g038230 [Sorghum bicolor]
Length = 942
Score = 97.8 bits (242), Expect = 1e-18
Identities = 45/82 (54%), Positives = 64/82 (78%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS SD S+ +VG KRKR+ +P+D+T+GAARA FLE+FAALP+D+MD + +E
Sbjct: 861 EDFSTTPTFSDDSKDEVGSKRKRVFSPDDVTRGAARARLFLEDFAALPVDEMDRSKIVEM 920
Query: 332 VNKLRTELENDASNFPWLQQFF 267
V K++++L+ DA++ PWLQQFF
Sbjct: 921 VTKMKSDLQKDAADNPWLQQFF 942
>ref|XP_002317931.1| muts homolog 2 family protein [Populus trichocarpa]
gi|222858604|gb|EEE96151.1| muts homolog 2 family protein
[Populus trichocarpa]
Length = 944
Score = 97.8 bits (242), Expect = 1e-18
Identities = 46/82 (56%), Positives = 62/82 (75%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS + SD + ++VG KRKR C +D++KGAARAHRFL++F+ LPLD MD+KQ++
Sbjct: 863 EDFSPTAIISDDAREEVGSKRKRECNMDDMSKGAARAHRFLKDFSDLPLDTMDLKQALLQ 922
Query: 332 VNKLRTELENDASNFPWLQQFF 267
+ KL+ +LE DA N WLQQFF
Sbjct: 923 IGKLKDDLEKDAVNCHWLQQFF 944
>ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis]
gi|223549157|gb|EEF50646.1| DNA mismatch repair protein
MSH2, putative [Ricinus communis]
Length = 936
Score = 95.5 bits (236), Expect = 6e-18
Identities = 42/82 (51%), Positives = 64/82 (78%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS + S+ + ++VG KR R C P+D+++GAARAH+FL+EF+ LPL+ MD+K++++
Sbjct: 855 EDFSPNAIVSNDTTEKVGSKRNRKCDPDDVSRGAARAHKFLKEFSDLPLETMDLKEALQQ 914
Query: 332 VNKLRTELENDASNFPWLQQFF 267
V+KL+ LE DA+N WL+QFF
Sbjct: 915 VSKLKEGLEKDAANCQWLKQFF 936
>ref|NP_001146301.1| DNA mismatch repair protein MSH2 [Zea mays]
gi|11386957|sp|Q9XGC9.1|MSH2_MAIZE RecName: Full=DNA
mismatch repair protein MSH2; AltName: Full=MUS1
gi|4775576|emb|CAB42554.1| MUS1 protein [Zea mays]
gi|414887420|tpg|DAA63434.1| TPA: DNA mismatch repair
protein MSH2 [Zea mays]
Length = 942
Score = 95.1 bits (235), Expect = 8e-18
Identities = 45/82 (54%), Positives = 61/82 (74%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS SD + +VG KRKR+ +P+DIT+GAARA FLEEFAALP+D+MD + +E
Sbjct: 861 EDFSTTPTFSDDLKDEVGSKRKRVFSPDDITRGAARARLFLEEFAALPMDEMDGSKILEM 920
Query: 332 VNKLRTELENDASNFPWLQQFF 267
K++ +L+ DA++ PWLQQFF
Sbjct: 921 ATKMKADLQKDAADNPWLQQFF 942
>ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 [Vitis vinifera]
Length = 902
Score = 95.1 bits (235), Expect = 8e-18
Identities = 44/82 (53%), Positives = 64/82 (78%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS S+ + +VG KRKR +P+DI++GAARAH+FL+EF+ LPL++MD+K++++
Sbjct: 821 EDFSPTEIVSNDASDKVGSKRKRESSPDDISRGAARAHQFLKEFSDLPLEKMDLKEALQQ 880
Query: 332 VNKLRTELENDASNFPWLQQFF 267
V+KL+ +LE DA N WLQQFF
Sbjct: 881 VSKLKNDLEKDAVNCHWLQQFF 902
>gb|ACL53653.1| unknown [Zea mays]
Length = 618
Score = 95.1 bits (235), Expect = 8e-18
Identities = 45/82 (54%), Positives = 61/82 (74%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS SD + +VG KRKR+ +P+DIT+GAARA FLEEFAALP+D+MD + +E
Sbjct: 537 EDFSTTPTFSDDLKDEVGSKRKRVFSPDDITRGAARARLFLEEFAALPMDEMDGSKILEM 596
Query: 332 VNKLRTELENDASNFPWLQQFF 267
K++ +L+ DA++ PWLQQFF
Sbjct: 597 ATKMKADLQKDAADNPWLQQFF 618
>ref|XP_006843758.1| hypothetical protein AMTR_s00007p00236950 [Amborella trichopoda]
gi|548846126|gb|ERN05433.1| hypothetical protein
AMTR_s00007p00236950 [Amborella trichopoda]
Length = 941
Score = 94.0 bits (232), Expect = 2e-17
Identities = 42/82 (51%), Positives = 61/82 (74%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS + S+ ++++VG KRK C+P+D+T+GAARAH+FL +F+ LPL+ M+ Q+++
Sbjct: 860 EDFSPTTASSNDTKEEVGAKRKHPCSPDDVTRGAARAHQFLRDFSQLPLEGMNYSQALQE 919
Query: 332 VNKLRTELENDASNFPWLQQFF 267
V KLR LE DA + PWLQQ F
Sbjct: 920 VAKLRCSLEKDALDNPWLQQLF 941
>gb|EOY20929.1| MUTS isoform 2 [Theobroma cacao]
Length = 942
Score = 94.0 bits (232), Expect = 2e-17
Identities = 44/81 (54%), Positives = 62/81 (76%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS S S+ + ++ G KRKR C P D+++GAA+AH+FL++FA LPL+ MD+KQ+++
Sbjct: 861 EDFSPTSIISNDARQEEGSKRKRECDPIDMSRGAAKAHKFLKDFADLPLESMDLKQALQQ 920
Query: 332 VNKLRTELENDASNFPWLQQF 270
VNKLR +LE DA N WL+QF
Sbjct: 921 VNKLRGDLEKDAVNCNWLRQF 941
>gb|EXC28067.1| DNA mismatch repair protein Msh2 [Morus notabilis]
Length = 992
Score = 93.6 bits (231), Expect = 2e-17
Identities = 43/81 (53%), Positives = 60/81 (74%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS + S+G + + G KRKR C P+DI++GAARAH+FL+EF+ LPL++MD KQ ME
Sbjct: 911 EDFSPNTIISNGFKHEAGSKRKRECDPDDISRGAARAHQFLKEFSELPLEKMDRKQIMEK 970
Query: 332 VNKLRTELENDASNFPWLQQF 270
++ L +++ DA N WLQQF
Sbjct: 971 ISMLNDDMQKDAVNSQWLQQF 991
>ref|XP_006440914.1| hypothetical protein CICLE_v10018746mg [Citrus clementina]
gi|557543176|gb|ESR54154.1| hypothetical protein
CICLE_v10018746mg [Citrus clementina]
Length = 938
Score = 93.2 bits (230), Expect = 3e-17
Identities = 41/82 (50%), Positives = 63/82 (76%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDF+ + SD ++ +VG KRKR+ P D+++GAARAH+FL+EF+ +PL+ MD+K+++E
Sbjct: 857 EDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEFSDMPLETMDLKEALER 916
Query: 332 VNKLRTELENDASNFPWLQQFF 267
V K++ +LE DA + WLQQFF
Sbjct: 917 VKKMKDDLEKDAGDCCWLQQFF 938
>emb|CBI15412.3| unnamed protein product [Vitis vinifera]
Length = 945
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Frame = -3
Query: 512 EDFSQG---SKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQS 342
EDFS S D+ +VG KRKR +P+DI++GAARAH+FL+EF+ LPL++MD+K++
Sbjct: 861 EDFSPTEIVSNDASDKGLKVGSKRKRESSPDDISRGAARAHQFLKEFSDLPLEKMDLKEA 920
Query: 341 MEHVNKLRTELENDASNFPWLQQFF 267
++ V+KL+ +LE DA N WLQQFF
Sbjct: 921 LQQVSKLKNDLEKDAVNCHWLQQFF 945
>gb|EEC78891.1| hypothetical protein OsI_19262 [Oryza sativa Indica Group]
gi|222630934|gb|EEE63066.1| hypothetical protein
OsJ_17874 [Oryza sativa Japonica Group]
Length = 942
Score = 92.8 bits (229), Expect = 4e-17
Identities = 44/81 (54%), Positives = 60/81 (74%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS SD S+ +VG KRKR+ +P+D+T+GAARA LEE A+LPLD+MD ++ E
Sbjct: 861 EDFSTAPNFSDDSKDEVGSKRKRVFSPDDVTRGAARARLLLEELASLPLDEMDGTKAAET 920
Query: 332 VNKLRTELENDASNFPWLQQF 270
V KL+++ E DA++ PWLQQF
Sbjct: 921 VTKLKSDFEKDAADNPWLQQF 941
>ref|XP_003562321.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH2-like
[Brachypodium distachyon]
Length = 942
Score = 92.4 bits (228), Expect = 5e-17
Identities = 44/81 (54%), Positives = 59/81 (72%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS +D S +VG KRKR+ +P+D+T+GAARA LEEF+ALPLD+MD +++ E
Sbjct: 861 EDFSAAPNFNDESNDEVGSKRKRVFSPDDVTRGAARARVLLEEFSALPLDEMDGRKATEV 920
Query: 332 VNKLRTELENDASNFPWLQQF 270
V KL+ + E DA+ PWLQQF
Sbjct: 921 VTKLKLDFEKDAAGNPWLQQF 941
>ref|XP_006485749.1| PREDICTED: DNA mismatch repair protein MSH2-like [Citrus sinensis]
Length = 938
Score = 92.0 bits (227), Expect = 7e-17
Identities = 40/82 (48%), Positives = 63/82 (76%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDF+ + SD ++ +VG KRKR+ P D+++GAARAH+FL+EF+ +PL+ MD+K+++E
Sbjct: 857 EDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEFSDMPLETMDLKEALER 916
Query: 332 VNKLRTELENDASNFPWLQQFF 267
V +++ +LE DA + WLQQFF
Sbjct: 917 VKRMKDDLEKDAGDCCWLQQFF 938
>ref|XP_004962511.1| PREDICTED: DNA mismatch repair protein MSH2-like [Setaria italica]
Length = 943
Score = 90.9 bits (224), Expect = 2e-16
Identities = 43/80 (53%), Positives = 58/80 (72%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS SD S +VG KRKR+ +P+D+T+GAARA FLEE AALP+D+MD ++ME
Sbjct: 861 EDFSTTPTFSDDSIDEVGSKRKRVFSPDDVTRGAARAQLFLEELAALPIDEMDQSKAMEM 920
Query: 332 VNKLRTELENDASNFPWLQQ 273
KL+ +++ DA+ PWLQQ
Sbjct: 921 AAKLKVDMQKDAAGNPWLQQ 940
>ref|XP_006655161.1| PREDICTED: DNA mismatch repair protein MSH2-like [Oryza brachyantha]
Length = 942
Score = 85.5 bits (210), Expect = 7e-15
Identities = 42/81 (51%), Positives = 55/81 (67%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS SD S+ +VG KRKR+ +P+D+T+GAAR LE A LPLD MD + E
Sbjct: 861 EDFSTAPNYSDDSKDEVGSKRKRVFSPDDVTRGAARVRLLLEGIATLPLDDMDGTKVTET 920
Query: 332 VNKLRTELENDASNFPWLQQF 270
V KL++E E D+++ PWLQQF
Sbjct: 921 VAKLKSEFEKDSADNPWLQQF 941
>gb|EMS48756.1| DNA mismatch repair protein MSH2 [Triticum urartu]
Length = 1271
Score = 85.5 bits (210), Expect = 7e-15
Identities = 40/81 (49%), Positives = 58/81 (71%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDF+ S +VG KRKR+ +P+D+T+GAARA LE+F+ALPLD++D ++ E
Sbjct: 1190 EDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFSALPLDEVDGSKATEM 1249
Query: 332 VNKLRTELENDASNFPWLQQF 270
V KL+++ E DA++ PWLQQF
Sbjct: 1250 VAKLKSDFEKDAASNPWLQQF 1270
>dbj|BAK07130.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 942
Score = 84.7 bits (208), Expect = 1e-14
Identities = 40/81 (49%), Positives = 57/81 (70%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDF+ S +VG KRKR+ +P+D+T+GAARA LE+FAALPLD++D ++ E
Sbjct: 861 EDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDEVDGSKATEM 920
Query: 332 VNKLRTELENDASNFPWLQQF 270
V KL+++ E DA++ PWL QF
Sbjct: 921 VAKLKSDFEKDAASNPWLHQF 941
>gb|EMJ10274.1| hypothetical protein PRUPE_ppa000981mg [Prunus persica]
Length = 942
Score = 84.0 bits (206), Expect = 2e-14
Identities = 38/82 (46%), Positives = 61/82 (74%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS + + + ++VG KRKR +D+++G+ARAH FL+EF+ LPL+ MD+K++++
Sbjct: 861 EDFSATAVIPNDAIEEVGSKRKREYDSDDMSRGSARAHEFLKEFSNLPLETMDLKEALQK 920
Query: 332 VNKLRTELENDASNFPWLQQFF 267
V+K++ +L+ DA N WLQQFF
Sbjct: 921 VSKMKNDLQKDAVNSHWLQQFF 942
>ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein MSH2-like [Glycine max]
Length = 942
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/81 (49%), Positives = 55/81 (67%)
Frame = -3
Query: 512 EDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRFLEEFAALPLDQMDMKQSMEH 333
EDFS + + + ++VG KRKR P+D+++GAA+A +FLE F ALPL+ MD Q+++
Sbjct: 861 EDFSPSATSLNHTTQEVGSKRKRAFEPDDMSQGAAKARQFLEAFVALPLETMDKMQALQE 920
Query: 332 VNKLRTELENDASNFPWLQQF 270
V KL LE DA N WLQQF
Sbjct: 921 VKKLTDTLEKDAENCNWLQQF 941