BLASTX nr result
ID: Zingiber24_contig00039254
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00039254
(470 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|WP_002838806.1| RNase H [Finegoldia magna] gi|302311109|gb|E... 60 4e-07
dbj|GAF22495.1| ribonuclease HI-related protein 3 [Bacillus sp. ... 59 5e-07
ref|WP_017053812.1| ribonuclease HI [Vibrio genomosp. F6] 59 5e-07
ref|WP_007567220.1| ribonuclease H [Bacteroides coprocola] gi|18... 59 7e-07
ref|WP_019007846.1| hypothetical protein [Cohnella laeviribosi] 59 9e-07
ref|WP_022124756.1| uncharacterized protein [Bacteroides coproco... 58 1e-06
ref|WP_002840596.1| RNase H [Finegoldia magna] gi|302493636|gb|E... 57 2e-06
ref|YP_001691703.1| ribonuclease H-like protein [Finegoldia magn... 57 2e-06
ref|WP_021123360.1| caulimovirus viroplasmin family protein [[Cl... 57 3e-06
ref|WP_021128677.1| RNase H family protein [[Clostridium] sordel... 57 3e-06
ref|WP_022192297.1| ribonuclease H [Parabacteroides sp. CAG:2] g... 57 3e-06
ref|YP_004259428.1| ribonuclease H1 [Bacteroides salanitronis DS... 57 3e-06
ref|WP_008778800.1| ribonuclease H [Parabacteroides sp. 20_3] gi... 57 3e-06
ref|WP_005860715.1| ribonuclease H [Bacteroidales] gi|298265255|... 57 3e-06
ref|WP_005864047.1| ribonuclease H [Bacteroidales] gi|262293661|... 57 3e-06
ref|WP_009018726.1| ribonuclease H [Bacteroidales] gi|256736019|... 57 3e-06
ref|YP_001304149.1| ribonuclease H-like protein [Parabacteroides... 57 3e-06
ref|WP_022231793.1| uncharacterized protein [Bacteroides sp. CAG... 57 3e-06
ref|XP_004963971.1| PREDICTED: uncharacterized protein LOC101764... 57 3e-06
ref|XP_004959008.1| PREDICTED: uncharacterized protein LOC101754... 57 3e-06
>ref|WP_002838806.1| RNase H [Finegoldia magna] gi|302311109|gb|EFK93130.1| ribonuclease
HI [Finegoldia magna ACS-171-V-Col3]
Length = 202
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEAYLDKKSA 313
Y V +GR PGIY +W E V FKGAIYKSFK++EEA+ E +KK A
Sbjct: 5 YAVKIGRNPGIYNSWAECQEQVNGFKGAIYKSFKTKEEADNFIEGEDNKKVA 56
>dbj|GAF22495.1| ribonuclease HI-related protein 3 [Bacillus sp. JCM 19047]
Length = 210
Score = 59.3 bits (142), Expect = 5e-07
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAF 340
YVV+ G+EPGIYETW E V FKGA YKSF ++ EAE+AF
Sbjct: 7 YVVWAGKEPGIYETWSECERQVKGFKGARYKSFPTKTEAEQAF 49
>ref|WP_017053812.1| ribonuclease HI [Vibrio genomosp. F6]
Length = 253
Score = 59.3 bits (142), Expect = 5e-07
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEAYLDKKSAPTSFA--P 295
YVV+ GR+ GI+ W +HV F GA YKSFK+R EAE AF S+ +S A P
Sbjct: 6 YVVWKGRQTGIFTDWATCKSHVDGFNGARYKSFKTRSEAESAFGGKSSATSSRSSTAKKP 65
Query: 294 SRNEISCATXXXXXXSNLERKLSKD 220
+ N + T N E K+ D
Sbjct: 66 TANSVKTYTAKEILALNAEVKIFTD 90
>ref|WP_007567220.1| ribonuclease H [Bacteroides coprocola] gi|189431645|gb|EDV00630.1|
hypothetical protein BACCOP_02337 [Bacteroides coprocola
DSM 17136]
Length = 222
Score = 58.9 bits (141), Expect = 7e-07
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFE----AYLDKKSAPTSF 301
YVV+ G EPGIY +W + + +KGAIYKSF +REEAE AF YL KKS +
Sbjct: 21 YVVWKGAEPGIYTSWTDCQLQIKNYKGAIYKSFATREEAEHAFATPAYVYL-KKSQTATH 79
Query: 300 APSRNEI 280
P +I
Sbjct: 80 EPEEKKI 86
>ref|WP_019007846.1| hypothetical protein [Cohnella laeviribosi]
Length = 212
Score = 58.5 bits (140), Expect = 9e-07
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAF 340
YVV+ GR PGIYE+W E + +F+GA YKSF+SR EAE AF
Sbjct: 7 YVVWAGRNPGIYESWPECRKQIEKFEGAKYKSFESRAEAEAAF 49
>ref|WP_022124756.1| uncharacterized protein [Bacteroides coprocola CAG:162]
gi|524312129|emb|CDA72965.1| uncharacterized protein
BN509_00060 [Bacteroides coprocola CAG:162]
Length = 222
Score = 58.2 bits (139), Expect = 1e-06
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFE----AYLDKKSAPTSF 301
YVV+ G EPGIY +W + + +KGAIYKSF +REEAE AF YL KKS +
Sbjct: 21 YVVWKGVEPGIYTSWTDCQLQIKNYKGAIYKSFTTREEAEHAFATPAYVYL-KKSQTATH 79
Query: 300 APSRNEI 280
P +I
Sbjct: 80 EPEEKKI 86
>ref|WP_002840596.1| RNase H [Finegoldia magna] gi|302493636|gb|EFL53424.1| ribonuclease
HI [Finegoldia magna BVS033A4]
Length = 202
Score = 57.4 bits (137), Expect = 2e-06
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEAYLDKKSA 313
Y V +GR PGIY +W E V FKGAIYKSFK++EEA+ +KK A
Sbjct: 5 YAVKIGRNPGIYNSWAECQEQVNGFKGAIYKSFKTKEEADNFINGDDNKKVA 56
>ref|YP_001691703.1| ribonuclease H-like protein [Finegoldia magna ATCC 29328]
gi|488930132|ref|WP_002841207.1| RNase H [Finegoldia
magna] gi|167830897|dbj|BAG07813.1| ribonuclease
H-related protein [Finegoldia magna ATCC 29328]
gi|341591056|gb|EGS34264.1| ribonuclease HI [Finegoldia
magna SY403409CC001050417]
Length = 202
Score = 57.4 bits (137), Expect = 2e-06
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEAYLDKKSA 313
Y V +GR PGIY +W E V FKGAIYKSFK++EEA+ +KK A
Sbjct: 5 YAVKIGRNPGIYNSWAECQEQVNGFKGAIYKSFKTKEEADNFINGDDNKKVA 56
>ref|WP_021123360.1| caulimovirus viroplasmin family protein [[Clostridium] sordellii]
gi|529074646|gb|EPZ58688.1| caulimovirus viroplasmin
family protein [Clostridium sordellii ATCC 9714]
Length = 61
Score = 57.0 bits (136), Expect = 3e-06
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEK 346
Y V VG++PGIY+TW E V +F GAIYKSFK+ EEAEK
Sbjct: 6 YAVKVGKKPGIYKTWDECKEQVNKFPGAIYKSFKTLEEAEK 46
>ref|WP_021128677.1| RNase H family protein [[Clostridium] sordellii]
gi|529073928|gb|EPZ57972.1| RNase H family protein
[Clostridium sordellii VPI 9048]
Length = 243
Score = 57.0 bits (136), Expect = 3e-06
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEK 346
Y V VG++PGIY+TW E V +F GAIYKSFK+ EEAEK
Sbjct: 6 YAVKVGKKPGIYKTWDECKEQVNKFPGAIYKSFKTLEEAEK 46
>ref|WP_022192297.1| ribonuclease H [Parabacteroides sp. CAG:2]
gi|524397919|emb|CDB50163.1| ribonuclease H
[Parabacteroides sp. CAG:2]
Length = 211
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEA----YLDKKSAPTSF 301
YVV+ G PGIY+ W E V +GA YKSF++REEA KAFEA YL S+P +
Sbjct: 7 YVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAV 66
Query: 300 A 298
A
Sbjct: 67 A 67
>ref|YP_004259428.1| ribonuclease H1 [Bacteroides salanitronis DSM 18170]
gi|503383717|ref|WP_013618378.1| ribonuclease H
[Bacteroides salanitronis] gi|324319064|gb|ADY36955.1|
putative ribonuclease H1 [Bacteroides salanitronis DSM
18170]
Length = 208
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 9/74 (12%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAF----EAYLD--KKSAPT 307
YVV+ G EPG+Y++W + + +KGA+YKSF +REEAEKA YL K++A
Sbjct: 7 YVVWKGVEPGVYDSWTDCQLQIKGYKGALYKSFDTREEAEKALVTPPHHYLQPHKETASQ 66
Query: 306 SF---APSRNEISC 274
SF PS +++C
Sbjct: 67 SFEKRLPSGFDLNC 80
>ref|WP_008778800.1| ribonuclease H [Parabacteroides sp. 20_3]
gi|300829738|gb|EFK60391.1| ribonuclease H
[Parabacteroides sp. 20_3]
Length = 211
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEA----YLDKKSAPTSF 301
YVV+ G PGIY+ W E V +GA YKSF++REEA KAFEA YL S+P +
Sbjct: 7 YVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAV 66
Query: 300 A 298
A
Sbjct: 67 A 67
>ref|WP_005860715.1| ribonuclease H [Bacteroidales] gi|298265255|gb|EFI06918.1|
ribonuclease H [Bacteroides sp. 3_1_19]
gi|409225908|gb|EKN18822.1| hypothetical protein
HMPREF1075_03577 [Parabacteroides distasonis CL03T12C09]
Length = 211
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEA----YLDKKSAPTSF 301
YVV+ G PGIY+ W E V +GA YKSF++REEA KAFEA YL S+P +
Sbjct: 7 YVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAV 66
Query: 300 A 298
A
Sbjct: 67 A 67
>ref|WP_005864047.1| ribonuclease H [Bacteroidales] gi|262293661|gb|EEY81596.1|
ribonuclease H [Bacteroides sp. 2_1_33B]
gi|409236861|gb|EKN29665.1| hypothetical protein
HMPREF1059_01266 [Parabacteroides distasonis CL09T03C24]
Length = 211
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEA----YLDKKSAPTSF 301
YVV+ G PGIY+ W E V +GA YKSF++REEA KAFEA YL S+P +
Sbjct: 7 YVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAV 66
Query: 300 A 298
A
Sbjct: 67 A 67
>ref|WP_009018726.1| ribonuclease H [Bacteroidales] gi|256736019|gb|EEU49350.1|
ribonuclease H [Parabacteroides sp. D13]
gi|409232703|gb|EKN25546.1| hypothetical protein
HMPREF0999_03842 [Parabacteroides sp. D25]
Length = 211
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEA----YLDKKSAPTSF 301
YVV+ G PGIY+ W E V +GA YKSF++REEA KAFEA YL S+P +
Sbjct: 7 YVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAV 66
Query: 300 A 298
A
Sbjct: 67 A 67
>ref|YP_001304149.1| ribonuclease H-like protein [Parabacteroides distasonis ATCC 8503]
gi|500657100|ref|WP_011967005.1| ribonuclease H
[Parabacteroides distasonis] gi|149937830|gb|ABR44527.1|
ribonuclease H-related protein [Parabacteroides
distasonis ATCC 8503]
Length = 211
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEA----YLDKKSAPTSF 301
YVV+ G PGIY+ W E V +GA YKSF++REEA KAFEA YL S+P +
Sbjct: 7 YVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAV 66
Query: 300 A 298
A
Sbjct: 67 A 67
>ref|WP_022231793.1| uncharacterized protein [Bacteroides sp. CAG:443]
gi|524456454|emb|CDB99709.1| uncharacterized protein
BN659_00640 [Bacteroides sp. CAG:443]
Length = 209
Score = 56.6 bits (135), Expect = 3e-06
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAF 340
YVV+ G EPGIY +W + + +KGAIYKSF +REEAE AF
Sbjct: 8 YVVWKGVEPGIYSSWTDCQLQIKNYKGAIYKSFSTREEAEHAF 50
>ref|XP_004963971.1| PREDICTED: uncharacterized protein LOC101764719 [Setaria italica]
Length = 467
Score = 56.6 bits (135), Expect = 3e-06
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEAYLDKKSAPT-SFAPS 292
YVV VGR+PG+Y WV+A V +KGA +K +KS +EA AF +K PT S P
Sbjct: 381 YVVHVGRQPGVYSNWVDAHAQVSGYKGACHKKYKSSDEAFAAFYGLQNKDVKPTDSHDPP 440
Query: 291 RNEI 280
+ E+
Sbjct: 441 KMEL 444
>ref|XP_004959008.1| PREDICTED: uncharacterized protein LOC101754670 [Setaria italica]
gi|514789331|ref|XP_004971796.1| PREDICTED:
uncharacterized protein LOC101767083 [Setaria italica]
Length = 460
Score = 56.6 bits (135), Expect = 3e-06
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -3
Query: 468 YVVFVGREPGIYETWVEASNHVIRFKGAIYKSFKSREEAEKAFEAYLDKKSAPT-SFAPS 292
YVV VGR+PG+Y WV+A V +KGA +K +KS +EA AF +K PT S P
Sbjct: 374 YVVHVGRQPGVYSNWVDAHAQVSGYKGACHKKYKSSDEAFAAFYGLQNKDVKPTDSHDPP 433
Query: 291 RNEI 280
+ E+
Sbjct: 434 KMEL 437