BLASTX nr result
ID: Zingiber24_contig00038619
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00038619
(355 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMT27361.1| KH domain-containing protein [Aegilops tauschii] 67 2e-09
gb|EMS59864.1| KH domain-containing protein SPIN1 [Triticum urartu] 67 2e-09
dbj|BAJ96236.1| predicted protein [Hordeum vulgare subsp. vulgare] 63 4e-08
ref|XP_004981292.1| PREDICTED: KH domain-containing protein SPIN... 62 6e-08
ref|XP_004955829.1| PREDICTED: KH domain-containing protein SPIN... 62 6e-08
tpg|DAA60062.1| TPA: nucleic acid binding protein [Zea mays] 62 6e-08
ref|XP_002459573.1| hypothetical protein SORBIDRAFT_02g006770 [S... 62 6e-08
ref|NP_001150031.1| nucleic acid binding protein [Zea mays] gi|1... 62 6e-08
ref|NP_001130116.1| uncharacterized protein LOC100191210 [Zea ma... 62 6e-08
ref|XP_002466215.1| hypothetical protein SORBIDRAFT_01g003680 [S... 62 8e-08
ref|XP_003563829.1| PREDICTED: KH domain-containing protein SPIN... 62 1e-07
ref|XP_003557365.1| PREDICTED: KH domain-containing protein SPIN... 62 1e-07
ref|XP_002268790.1| PREDICTED: KH domain-containing protein At2g... 62 1e-07
tpg|DAA39471.1| TPA: LOW QUALITY PROTEIN: hypothetical protein Z... 61 1e-07
tpg|DAA39469.1| TPA: hypothetical protein ZEAMMB73_019968 [Zea m... 61 1e-07
ref|NP_001140438.1| hypothetical protein [Zea mays] gi|194699514... 61 1e-07
ref|XP_004137670.1| PREDICTED: KH domain-containing protein At2g... 59 2e-07
ref|XP_002323686.2| KH domain-containing family protein [Populus... 60 3e-07
gb|EOY04387.1| RNA-binding KH domain-containing protein [Theobro... 59 5e-07
gb|EMJ06890.1| hypothetical protein PRUPE_ppa009701mg [Prunus pe... 59 5e-07
>gb|EMT27361.1| KH domain-containing protein [Aegilops tauschii]
Length = 242
Score = 67.0 bits (162), Expect = 2e-09
Identities = 35/59 (59%), Positives = 41/59 (69%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY Q+ SP+ +S Q S D+D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYGQQGFSPSRNLSPQIRSNPDVD-------SQYLAELLAEHQKLGPFMQVLPICS 52
>gb|EMS59864.1| KH domain-containing protein SPIN1 [Triticum urartu]
Length = 242
Score = 67.0 bits (162), Expect = 2e-09
Identities = 35/59 (59%), Positives = 41/59 (69%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY Q+ SP+ +S Q S D+D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYGQQGFSPSRNLSPQIRSNPDVD-------SQYLAELLAEHQKLGPFMQVLPICS 52
>dbj|BAJ96236.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 282
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY Q+ SP+ +S Q S D+ +SQYLA+LL+EH+KLGPFMQVLPICS
Sbjct: 1 MSGLYGQQGFSPSRNLSPQIRSNPDVV------DSQYLAELLAEHEKLGPFMQVLPICS 53
>ref|XP_004981292.1| PREDICTED: KH domain-containing protein SPIN1-like [Setaria
italica]
Length = 279
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/59 (59%), Positives = 41/59 (69%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY+Q SPA +S Q S D+D SQYLA+LL+EHQKLGPFMQVLPIC+
Sbjct: 1 MSGLYSQ-GFSPARNLSPQIRSNPDVD-------SQYLAELLAEHQKLGPFMQVLPICN 51
>ref|XP_004955829.1| PREDICTED: KH domain-containing protein SPIN1-like [Setaria
italica]
Length = 281
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY+Q SPA +S Q S D D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYSQ-GFSPARTLSPQIRSNPDAD-------SQYLAELLAEHQKLGPFMQVLPICS 51
>tpg|DAA60062.1| TPA: nucleic acid binding protein [Zea mays]
Length = 361
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY+Q SPA +S Q S D D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYSQ-GFSPARTLSPQIRSNPDAD-------SQYLAELLAEHQKLGPFMQVLPICS 51
>ref|XP_002459573.1| hypothetical protein SORBIDRAFT_02g006770 [Sorghum bicolor]
gi|241922950|gb|EER96094.1| hypothetical protein
SORBIDRAFT_02g006770 [Sorghum bicolor]
Length = 281
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY+Q SPA +S Q S D D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYSQ-GFSPARTLSPQIRSNPDAD-------SQYLAELLAEHQKLGPFMQVLPICS 51
>ref|NP_001150031.1| nucleic acid binding protein [Zea mays] gi|194699002|gb|ACF83585.1|
unknown [Zea mays] gi|195636208|gb|ACG37572.1| nucleic
acid binding protein [Zea mays]
gi|414884049|tpg|DAA60063.1| TPA: nucleic acid binding
protein [Zea mays]
Length = 281
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY+Q SPA +S Q S D D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYSQ-GFSPARTLSPQIRSNPDAD-------SQYLAELLAEHQKLGPFMQVLPICS 51
>ref|NP_001130116.1| uncharacterized protein LOC100191210 [Zea mays]
gi|194688334|gb|ACF78251.1| unknown [Zea mays]
gi|413932655|gb|AFW67206.1| nucleic acid binding protein
[Zea mays]
Length = 279
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/59 (59%), Positives = 41/59 (69%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY+Q SPA +S Q S D+D SQYLA+LL+EHQKLGPFMQVLPIC+
Sbjct: 1 MSGLYSQ-GFSPARNLSPQIRSNPDVD-------SQYLAELLAEHQKLGPFMQVLPICN 51
>ref|XP_002466215.1| hypothetical protein SORBIDRAFT_01g003680 [Sorghum bicolor]
gi|241920069|gb|EER93213.1| hypothetical protein
SORBIDRAFT_01g003680 [Sorghum bicolor]
Length = 279
Score = 62.0 bits (149), Expect = 8e-08
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY Q SPA +S Q S D+D SQYLA+LL+EHQKLGPFMQVLPIC+
Sbjct: 1 MSGLYGQ-GFSPARNLSPQIRSNPDVD-------SQYLAELLAEHQKLGPFMQVLPICN 51
>ref|XP_003563829.1| PREDICTED: KH domain-containing protein SPIN1-like [Brachypodium
distachyon]
Length = 283
Score = 61.6 bits (148), Expect = 1e-07
Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Frame = +1
Query: 178 MSSLYAQRSS-SPAAPVSSQT-SSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPIC 351
MS LY Q+ S SPA +S Q S+ D+D SQYLA+LL+EHQKLGPFMQVLPIC
Sbjct: 1 MSGLYGQQGSFSPARNLSPQIRSNPPDVD-------SQYLAELLAEHQKLGPFMQVLPIC 53
Query: 352 S 354
S
Sbjct: 54 S 54
>ref|XP_003557365.1| PREDICTED: KH domain-containing protein SPIN1-like [Brachypodium
distachyon]
Length = 285
Score = 61.6 bits (148), Expect = 1e-07
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY+Q SPA S Q D DR+ SQYLA+LL+EHQKLGPFMQVLP+CS
Sbjct: 1 MSGLYSQ-GFSPARTASPQIRGNPDHDRLLC---SQYLAELLAEHQKLGPFMQVLPVCS 55
>ref|XP_002268790.1| PREDICTED: KH domain-containing protein At2g38610 [Vitis vinifera]
gi|296085835|emb|CBI31159.3| unnamed protein product
[Vitis vinifera]
Length = 281
Score = 61.6 bits (148), Expect = 1e-07
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY + SPA VS Q S D+D SQYL++LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLY-NHNFSPARAVSPQIRSTPDVD-------SQYLSELLAEHQKLGPFMQVLPICS 51
>tpg|DAA39471.1| TPA: LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_019968 [Zea
mays]
Length = 345
Score = 61.2 bits (147), Expect = 1e-07
Identities = 36/59 (61%), Positives = 39/59 (66%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY Q SPA +S Q S D D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYNQ-GFSPARTLSPQIRSNPDAD-------SQYLAELLAEHQKLGPFMQVLPICS 51
>tpg|DAA39469.1| TPA: hypothetical protein ZEAMMB73_019968 [Zea mays]
Length = 114
Score = 61.2 bits (147), Expect = 1e-07
Identities = 36/59 (61%), Positives = 39/59 (66%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY Q SPA +S Q S D D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYNQ-GFSPARTLSPQIRSNPDAD-------SQYLAELLAEHQKLGPFMQVLPICS 51
>ref|NP_001140438.1| hypothetical protein [Zea mays] gi|194699514|gb|ACF83841.1| unknown
[Zea mays] gi|414588899|tpg|DAA39470.1| TPA:
hypothetical protein ZEAMMB73_019968 [Zea mays]
Length = 281
Score = 61.2 bits (147), Expect = 1e-07
Identities = 36/59 (61%), Positives = 39/59 (66%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY Q SPA +S Q S D D SQYLA+LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLYNQ-GFSPARTLSPQIRSNPDAD-------SQYLAELLAEHQKLGPFMQVLPICS 51
>ref|XP_004137670.1| PREDICTED: KH domain-containing protein At2g38610-like [Cucumis
sativus]
Length = 351
Score = 59.3 bits (142), Expect(2) = 2e-07
Identities = 33/63 (52%), Positives = 41/63 (65%)
Frame = +1
Query: 166 STTIMSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLP 345
+T +MS LY + SPA S Q + D D SQYL++LL+EHQKLGPFMQ+LP
Sbjct: 66 ATQVMSGLY-NPNFSPARAASPQIRTSGDAD-------SQYLSELLAEHQKLGPFMQILP 117
Query: 346 ICS 354
ICS
Sbjct: 118 ICS 120
Score = 21.2 bits (43), Expect(2) = 2e-07
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 135 SPFFHLAYFPL 167
SPFF L+ FPL
Sbjct: 15 SPFFFLSLFPL 25
>ref|XP_002323686.2| KH domain-containing family protein [Populus trichocarpa]
gi|550321530|gb|EEF05447.2| KH domain-containing family
protein [Populus trichocarpa]
Length = 281
Score = 60.1 bits (144), Expect = 3e-07
Identities = 34/59 (57%), Positives = 39/59 (66%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY S SPA S Q S D+D SQYL++LL+EHQKLGPFMQ+LPICS
Sbjct: 1 MSGLY-NPSFSPARAASPQIRSTPDVD-------SQYLSELLAEHQKLGPFMQILPICS 51
>gb|EOY04387.1| RNA-binding KH domain-containing protein [Theobroma cacao]
Length = 281
Score = 59.3 bits (142), Expect = 5e-07
Identities = 34/59 (57%), Positives = 39/59 (66%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY + SPA S Q S D+D SQYL++LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLY-NPNFSPARAASPQIRSTPDVD-------SQYLSELLAEHQKLGPFMQVLPICS 51
>gb|EMJ06890.1| hypothetical protein PRUPE_ppa009701mg [Prunus persica]
Length = 281
Score = 59.3 bits (142), Expect = 5e-07
Identities = 34/59 (57%), Positives = 39/59 (66%)
Frame = +1
Query: 178 MSSLYAQRSSSPAAPVSSQTSSKEDIDRIGVANNSQYLAKLLSEHQKLGPFMQVLPICS 354
MS LY + SPA S Q S D+D SQYL++LL+EHQKLGPFMQVLPICS
Sbjct: 1 MSGLY-NPNFSPARAASPQIRSTPDVD-------SQYLSELLAEHQKLGPFMQVLPICS 51