BLASTX nr result

ID: Zingiber24_contig00038298 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00038298
         (218 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316399.2| hypothetical protein POPTR_0010s23570g [Popu...    57   2e-06
ref|XP_002534016.1| Pectate lyase precursor, putative [Ricinus c...    57   3e-06
ref|XP_002311060.2| hypothetical protein POPTR_0008s032602g, par...    55   7e-06
gb|EOY18836.1| Pectin lyase-like superfamily protein isoform 3, ...    55   1e-05
gb|EOY18834.1| Pectin lyase-like superfamily protein isoform 1 [...    55   1e-05

>ref|XP_002316399.2| hypothetical protein POPTR_0010s23570g [Populus trichocarpa]
           gi|550330449|gb|EEF02570.2| hypothetical protein
           POPTR_0010s23570g [Populus trichocarpa]
          Length = 496

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
 Frame = -2

Query: 130 HAHPDPDFVAREVQRQVAYS-NRRALLAAGDKDQCLTGNPIDDC 2
           H HPDP+ VA +V+R+V  S +RR LL+  +KDQC TGNPIDDC
Sbjct: 33  HQHPDPEAVAEDVKRRVNASLSRRHLLSIQEKDQCQTGNPIDDC 76


>ref|XP_002534016.1| Pectate lyase precursor, putative [Ricinus communis]
           gi|223525981|gb|EEF28369.1| Pectate lyase precursor,
           putative [Ricinus communis]
          Length = 503

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
 Frame = -2

Query: 130 HAHPDPDFVAREVQRQVAYS-NRRALLAAGDKDQCLTGNPIDDC 2
           H HPDP+ +A++VQR +  S +RR LL+   KDQC TGNPIDDC
Sbjct: 34  HQHPDPESIAQDVQRTINASVSRRQLLSTLPKDQCQTGNPIDDC 77


>ref|XP_002311060.2| hypothetical protein POPTR_0008s032602g, partial [Populus
           trichocarpa] gi|550332326|gb|EEE88427.2| hypothetical
           protein POPTR_0008s032602g, partial [Populus
           trichocarpa]
          Length = 376

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 7/50 (14%)
 Frame = -2

Query: 130 HAHPDPDFVAREVQRQVAYSN-------RRALLAAGDKDQCLTGNPIDDC 2
           H HPDP+ VA +V+RQ  Y +       RR LL+  +KDQC TGNPIDDC
Sbjct: 33  HQHPDPEAVAEDVKRQDLYIHLVNASLSRRNLLSIQEKDQCQTGNPIDDC 82


>gb|EOY18836.1| Pectin lyase-like superfamily protein isoform 3, partial [Theobroma
           cacao]
          Length = 481

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = -2

Query: 130 HAHPDPDFVAREVQRQVAYS-NRRALLAAGDKDQCLTGNPIDDC 2
           H HPDP+ V ++VQR++  S +RR  L+   KDQC TGNPIDDC
Sbjct: 18  HQHPDPESVVQDVQRRLNVSLSRRQALSVTQKDQCRTGNPIDDC 61


>gb|EOY18834.1| Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
           gi|508726938|gb|EOY18835.1| Pectin lyase-like
           superfamily protein isoform 1 [Theobroma cacao]
          Length = 493

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = -2

Query: 130 HAHPDPDFVAREVQRQVAYS-NRRALLAAGDKDQCLTGNPIDDC 2
           H HPDP+ V ++VQR++  S +RR  L+   KDQC TGNPIDDC
Sbjct: 30  HQHPDPESVVQDVQRRLNVSLSRRQALSVTQKDQCRTGNPIDDC 73


Top