BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00038233
         (2322 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746...   424   e-116
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   403   e-109
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16...   386   e-104
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   385   e-104
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               384   e-103
gb|ACH86210.1| unknown [Citrus yellow mosaic virus]                   383   e-103
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]               382   e-103
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]               382   e-103
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478...   380   e-102
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s...   380   e-102
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               380   e-102
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   380   e-102
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               380   e-102
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               378   e-102
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               377   e-101
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|...   376   e-101
gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]                374   e-100
ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus] g...   352   4e-94
emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]               352   4e-94
gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]             352   5e-94

>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
            [Piper yellow mottle virus]
          Length = 1925

 Score =  424 bits (1091), Expect = e-116
 Identities = 213/411 (51%), Positives = 293/411 (71%), Gaps = 2/411 (0%)
 Frame = -1

Query: 1290 LEQ*LDPQVQLRQSMQERATLVPAEVLYHSRRDDAHHRVYMHRSEEAILVTT-NQVDRAF 1114
            +EQ LDPQ QL +SM +RA++VPAEVLYHSR+DD +H+VY+HRSEEA+ VT  NQVDR F
Sbjct: 47   IEQSLDPQKQLMRSMTQRASIVPAEVLYHSRKDDVNHKVYIHRSEEALSVTEGNQVDRTF 106

Query: 1113 IQEDSFHQLQRSGMRFIHMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVD 934
            IQE+S  +L +SG++FIH+GV+QVR+QILHR+EEGTL LVVFRDNRW+GD+ I ATMEVD
Sbjct: 107  IQEESHKKLVKSGIKFIHLGVLQVRLQILHRKEEGTLALVVFRDNRWKGDKGIIATMEVD 166

Query: 933  LTHDSQLVYVIPDTMLTISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNV 754
            LT   Q+VY+IPD M+T++DFY NI IS+L RGYEGW++GEAN+L+TRGM+GRLSNTPNV
Sbjct: 167  LTKGCQMVYIIPDIMMTVNDFYHNIHISVLTRGYEGWQHGEANLLVTRGMIGRLSNTPNV 226

Query: 753  GFAYEVQNVVDYFTSHGVKALPGRRYNTREFMGQNWIIRPSTINIPLQPTEVTTNNLIDG 574
            GFAY++Q VVDYF +HGV ALPG +Y+T    GQ WI++   + +P +P  + + +L+DG
Sbjct: 227  GFAYDIQEVVDYFITHGVNALPGAKYDTTRLQGQQWILKKPELIVPTRPGHINSKDLVDG 286

Query: 573  RISLHFENYQATRTPTPPDYNSIDQENSNDDEEERMHLVAVLVAEQDILVAEPEVILYIK 394
             ISL F NY    + +   YN+ D+E  +D+E      +   + ++   V  PEV L + 
Sbjct: 287  TISLRFSNYTTQASTSKLKYNANDEEIQSDEE------ILAYIHQERQEVTTPEV-LGVI 339

Query: 393  KRSATAKTPKRASKGAVGYDLAIDQDYSIPPRGQELLSTGVSIKVPEGTYARIAPRSS-Y 217
            + +  A+ P R S  A GY+L   +   I P  ++L  TG++I+VPEG Y RIA RSS  
Sbjct: 340  RLTPEARLPVRTSPSAAGYNLFGTERLVIQPGERQLQRTGIAIRVPEGHYGRIAARSSAA 399

Query: 216  XXXXXXXXXXXIDSDYRGEVKILAHNFSDNTLFFKAGEYIAQIILECCKTP 64
                       ID+D++GE+K+L  N S++ +  +AG+ +AQ++LE   TP
Sbjct: 400  WQLGIVVGAGVIDADFQGEIKVLIFNLSNSPVEIEAGDAVAQLVLERISTP 450


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
            gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
            bacilliform virus GD1]
          Length = 1892

 Score =  403 bits (1035), Expect = e-109
 Identities = 202/327 (61%), Positives = 240/327 (73%), Gaps = 2/327 (0%)
 Frame = -1

Query: 1410 PLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQERAT 1231
            PLFEDQ+          Y   RA++R+ RRITGR PY  TLEQ +DPQ  L+ SMQERA 
Sbjct: 27   PLFEDQIRDYRNSQRRAYTTQRAVRRLRRRITGRQPYQETLEQEVDPQADLQMSMQERAR 86

Query: 1230 LVPAEVLYHSRRDDAHHRVYMHRSEEAILVTT-NQVDRAFIQEDSFHQLQRSGMRFIHMG 1054
            LVPAEVLY SRRD  HHRVY HRSEEAIL T  NQVDR FIQ +S   LQR+G+ FIH+G
Sbjct: 87   LVPAEVLYRSRRDTIHHRVYSHRSEEAILCTDGNQVDRTFIQPESMEALQRTGISFIHIG 146

Query: 1053 VIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLTISD 874
            ++QVR+QILHRQ EGT+ LVVFRD RW GDQ+IFATMEVDLT   Q++YV+PDTM+TI D
Sbjct: 147  IMQVRLQILHRQNEGTMALVVFRDTRWNGDQSIFATMEVDLTEGRQIIYVVPDTMMTIGD 206

Query: 873  FYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHGVKA 694
            F +NIQISIL RGY  W+NGEAN+L+TRG+VGRLSNTPNV FAYE+ NV DY TS GV+A
Sbjct: 207  FARNIQISILTRGYSNWQNGEANLLVTRGIVGRLSNTPNVAFAYEIGNVTDYLTSQGVQA 266

Query: 693  LPGRRYNTREFMGQNWIIRPSTI-NIPLQPTEVTTNNLIDGRISLHFENYQATRTPTPPD 517
            + GRRY++RE   Q WI+RP  +  +P  P  V T NLIDG ISL F +Y  T TP  P 
Sbjct: 267  IAGRRYDSRELQNQQWILRPPQVERLPQAPKNVDTRNLIDGSISLRFRDYATTSTPELPS 326

Query: 516  YNSIDQENSNDDEEERMHLVAVLVAEQ 436
            YN  D+E   D+E+   H+VA  V E+
Sbjct: 327  YNEQDEEVDPDEEQLMEHVVAAFVEEE 353


>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
            gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
            yellow mosaic virus]
          Length = 1983

 Score =  386 bits (991), Expect = e-104
 Identities = 194/334 (58%), Positives = 242/334 (72%), Gaps = 4/334 (1%)
 Frame = -1

Query: 1419 DGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQE 1240
            D  PL++DQ+          +  GR   ++  R     PY  TLEQ +DP+V L+ SMQE
Sbjct: 25   DNTPLYDDQIRDYRQWQRRRHNMGRRWNQLIGR-----PYNQTLEQVVDPEVALQLSMQE 79

Query: 1239 RATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMRFI 1063
            RA LVPAEVLY SR DD HH+VY+H+SEEAIL V  +QVDR  IQ +S  QL RSGM FI
Sbjct: 80   RARLVPAEVLYRSRTDDRHHQVYIHKSEEAILCVDGDQVDRLLIQPESAEQLSRSGMSFI 139

Query: 1062 HMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLT 883
            HMG++QVRIQILHRQ EGT  LVVFRDNRWQGDQ+IFATME+DLT   Q+VY+IPDTM+T
Sbjct: 140  HMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMT 199

Query: 882  ISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHG 703
            + DF +N+QISIL +GY  W+NGEAN+L+TRG+VGRLSNTPNV FAY++QNV DY  SHG
Sbjct: 200  VRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHG 259

Query: 702  VKALPGRRYNTREFMGQNWIIRPSTI-NIPLQPTEVTTNNLIDGRISLHFENYQATRTPT 526
            ++ALPGRRY+T +  GQ W +RPS I  +P+ PT V T N+IDG ISL F +YQ    PT
Sbjct: 260  IQALPGRRYSTADIQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPT 319

Query: 525  PPDYNSIDQENSNDDEEE--RMHLVAVLVAEQDI 430
            P  YN  D+E   D++EE  R H +A+   + ++
Sbjct: 320  PVAYNQHDEEVPPDEDEEQIRNHTIALWREDDEV 353


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  385 bits (989), Expect = e-104
 Identities = 207/382 (54%), Positives = 258/382 (67%), Gaps = 9/382 (2%)
 Frame = -1

Query: 1419 DGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQE 1240
            D  PL++DQ+          +  GR   ++  R     PY  TLEQ +DP+V L+ SMQE
Sbjct: 25   DNTPLYDDQIRDYRQWQQRRHNMGRRWNQLIGR-----PYNQTLEQVVDPEVALQLSMQE 79

Query: 1239 RATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMRFI 1063
            RA LVPAEVLY SR DD HH+VY+HRSEEAIL V  +QVDR  IQ +S  QL RSGM FI
Sbjct: 80   RARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMPFI 139

Query: 1062 HMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLT 883
            HMG++QVRIQILHRQ EGT  LVVFRDNRWQGDQ+IFATME+DLT   Q+VY+IPDTM+T
Sbjct: 140  HMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMT 199

Query: 882  ISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHG 703
            + DF +N+QISIL +GY  W+NGEAN+L+TRG+VGRLSNTPNV FAY++QNV DY  SHG
Sbjct: 200  VRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHG 259

Query: 702  VKALPGRRYNTREFMGQNWIIRPSTI-NIPLQPTEVTTNNLIDGRISLHFENYQATRTPT 526
            ++ALPGRRY+  +  GQ W +RPS I  +P+ PT V T N+IDG ISL F +YQ    PT
Sbjct: 260  IQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVGTRNMIDGSISLRFHSYQPAPDPT 319

Query: 525  PPDYNSIDQENSNDDEEE--RMHLVAVLVAEQD--ILVAEP--EVILYIKKRSATAKTPK 364
            P  YN  D+E   D++EE  R H +A+   + +    + EP  +   Y++    T     
Sbjct: 320  PVAYNQHDEEVPPDEDEEQIRNHTIALWREDDEEWDTLGEPSGKFDFYVRYTRPTHALQD 379

Query: 363  RASKGAVGY-DLAIDQDYSIPP 301
             A   A G+ DL  D   S PP
Sbjct: 380  PAHIVATGWDDLGNDPSPSSPP 401


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  384 bits (986), Expect = e-103
 Identities = 194/334 (58%), Positives = 241/334 (72%), Gaps = 4/334 (1%)
 Frame = -1

Query: 1419 DGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQE 1240
            D  PL++DQ+          +  GR   ++  R     PY  TLEQ +DP+V L+ SMQE
Sbjct: 25   DNTPLYDDQIRDYRQWQRRRHNMGRRWNQLIGR-----PYNQTLEQVVDPEVALQLSMQE 79

Query: 1239 RATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMRFI 1063
            RA LVPAEVLY SR DD HH+VY+HRSEEAIL V  +QVDR  IQ +S  QL RSGM FI
Sbjct: 80   RARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFI 139

Query: 1062 HMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLT 883
            HMG++QVRIQILHRQ EGT  LVVFRDNRWQGDQ+IFATME+DLT   Q+VY+IPDTM+T
Sbjct: 140  HMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMT 199

Query: 882  ISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHG 703
            + DF +N+QISIL +GY  W+NGEAN+L+TRG+VGRLSNTPNV FAY++QNV DY  SHG
Sbjct: 200  VRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHG 259

Query: 702  VKALPGRRYNTREFMGQNWIIRPSTI-NIPLQPTEVTTNNLIDGRISLHFENYQATRTPT 526
            ++ALPGRRY++ +  GQ W +RPS I  +P+ PT V T N+IDG ISL F +YQ    P 
Sbjct: 260  IQALPGRRYSSADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPA 319

Query: 525  PPDYNSIDQENSNDDEEE--RMHLVAVLVAEQDI 430
            P  YN  D+E   D++EE  R H +A+   E ++
Sbjct: 320  PVAYNQHDEEVPLDEDEEQIRNHTIALWREEHEV 353


>gb|ACH86210.1| unknown [Citrus yellow mosaic virus]
          Length = 463

 Score =  383 bits (983), Expect = e-103
 Identities = 196/338 (57%), Positives = 243/338 (71%), Gaps = 4/338 (1%)
 Frame = -1

Query: 1431 RTNTDGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQ 1252
            R NT   PL++DQ+          +  GR   ++  R     PY  TLEQ +DP+V L+ 
Sbjct: 24   RNNT---PLYDDQIRDYRQWQRRRHNMGRRWNQLIGR-----PYNQTLEQVVDPEVALQL 75

Query: 1251 SMQERATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSG 1075
            SMQERA LVPAEVLY SR DD HH+VY+HRSEEAIL V  +QVDR  IQ +S  QL RSG
Sbjct: 76   SMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSG 135

Query: 1074 MRFIHMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPD 895
            M FIHMG++QVRIQILHRQ EGT  LVVFRDNRWQGDQ+IFATME+DLT   Q+VY+IPD
Sbjct: 136  MSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPD 195

Query: 894  TMLTISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYF 715
            TM+T+ DF +N+QISIL +GY  W+NGEAN+L+TRG+VGRLSNTPNV FAY++QNV DY 
Sbjct: 196  TMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYL 255

Query: 714  TSHGVKALPGRRYNTREFMGQNWIIRPSTI-NIPLQPTEVTTNNLIDGRISLHFENYQAT 538
             SHG++ALPGRRY++ +  GQ W +RPS I  +P+ PT V T N+IDG ISL F +YQ  
Sbjct: 256  VSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPA 315

Query: 537  RTPTPPDYNSIDQENSNDDEEE--RMHLVAVLVAEQDI 430
              P P  YN  D+E   D++EE  R H +A+   E ++
Sbjct: 316  PDPAPVAYNQHDEEVPLDEDEEQIRNHTIALWREENEV 353


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score =  382 bits (982), Expect = e-103
 Identities = 195/335 (58%), Positives = 243/335 (72%), Gaps = 3/335 (0%)
 Frame = -1

Query: 1425 NTDGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSM 1246
            N +G PL+EDQ+          +   R  +R+ R + G   Y  TLEQ +DPQ  LR SM
Sbjct: 21   NREG-PLYEDQIRDYRRSQRRIFNLRRRARRLRRSMMG-SRYQETLEQEIDPQTTLRLSM 78

Query: 1245 QERATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMR 1069
            QERA LVPAEVLY SRRD  HHRVY HRSEE++L V  NQVDRAFIQ +S  QLQR+GM 
Sbjct: 79   QERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMS 138

Query: 1068 FIHMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTM 889
            FIH+G++QVRIQILHRQEEGT+ LVVFRDNRW GDQ+IFA ME+DLT  SQLV+VIPDTM
Sbjct: 139  FIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTM 198

Query: 888  LTISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTS 709
            +TI DF +N+Q+SIL RGYE W+NGEAN+LITRGM GRLSNTPNV FAY++ +  DY  S
Sbjct: 199  MTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLAS 258

Query: 708  HGVKALPGRRYNTREFMGQNWIIRPSTINI-PLQPTEVTTNNLIDGRISLHFENYQATRT 532
            HGVKA+ G++ N +    Q WI+RP   +I P+QP  V T NL+DG IS+ F +Y+A  +
Sbjct: 259  HGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATS 318

Query: 531  PTPPDYNSIDQENSNDDEEE-RMHLVAVLVAEQDI 430
             + P YN  D+E  ++ E E R H VAV + E+++
Sbjct: 319  TSRPHYNEEDEEVESETESEIREHTVAVWIGEEEV 353


>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  382 bits (981), Expect = e-103
 Identities = 195/335 (58%), Positives = 243/335 (72%), Gaps = 3/335 (0%)
 Frame = -1

Query: 1425 NTDGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSM 1246
            N +G PL+EDQ+          +   R  +R+ R + G   Y  TLEQ +DPQ  LR SM
Sbjct: 21   NREG-PLYEDQIRDYRRSQRRIFNLRRNARRLRRSMMG-SRYQETLEQEIDPQTTLRLSM 78

Query: 1245 QERATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMR 1069
            QERA LVPAEVLY SRRD  HHRVY HRSEE++L V  NQVDRAFIQ +S  QLQR+GM 
Sbjct: 79   QERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMS 138

Query: 1068 FIHMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTM 889
            FIH+G++QVRIQILHRQEEGT+ LVVFRDNRW GDQ+IFA ME+DLT  SQLV+VIPDTM
Sbjct: 139  FIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTM 198

Query: 888  LTISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTS 709
            +TI DF +N+Q+SIL RGYE W+NGEAN+LITRGM GRLSNTPNV FAY++ +  DY  S
Sbjct: 199  MTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLAS 258

Query: 708  HGVKALPGRRYNTREFMGQNWIIRPSTINI-PLQPTEVTTNNLIDGRISLHFENYQATRT 532
            HGVKA+ G++ N +    Q WI+RP   +I P+QP  V T NL+DG IS+ F +Y+A  +
Sbjct: 259  HGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATS 318

Query: 531  PTPPDYNSIDQENSNDDEEE-RMHLVAVLVAEQDI 430
             + P YN  D+E  ++ E E R H VAV + E+++
Sbjct: 319  TSRPHYNEEDEEVESETESEIREHTVAVWIGEEEV 353


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
            polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  380 bits (977), Expect = e-102
 Identities = 194/335 (57%), Positives = 243/335 (72%), Gaps = 3/335 (0%)
 Frame = -1

Query: 1425 NTDGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSM 1246
            N +G PL+EDQ+          +   R  +R+ R + G   Y  TLEQ +DPQ  LR SM
Sbjct: 21   NREG-PLYEDQIRDYRRGQRRIFNLRRRARRLRRSMMG-SRYQETLEQEIDPQTTLRLSM 78

Query: 1245 QERATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMR 1069
            QERA LVPAEVLY SRRD  HHRVY HRSEE++L V  +QVDRAFIQ +S  QLQR+GM 
Sbjct: 79   QERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMS 138

Query: 1068 FIHMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTM 889
            FIH+G++QVRIQILHRQEEGT+ LVVFRDNRW GDQ+IFA ME+DLT  SQLV+VIPDTM
Sbjct: 139  FIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTM 198

Query: 888  LTISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTS 709
            +TI DF +N+Q+SIL RGYE W+NGEAN+LITRGM GRLSNTPNV FAY++ +  DY  S
Sbjct: 199  MTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLAS 258

Query: 708  HGVKALPGRRYNTREFMGQNWIIRPSTINI-PLQPTEVTTNNLIDGRISLHFENYQATRT 532
            HGVKA+ G++ N +    Q WI+RP   +I P+QP  V T NL+DG IS+ F +Y+A  +
Sbjct: 259  HGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFHDYEAATS 318

Query: 531  PTPPDYNSIDQENSNDDEEE-RMHLVAVLVAEQDI 430
             + P YN  D+E  ++ E E R H +AV + E++I
Sbjct: 319  ASRPHYNEEDEEVESETESEIREHTIAVWIGEEEI 353


>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
          Length = 1868

 Score =  380 bits (977), Expect = e-102
 Identities = 192/331 (58%), Positives = 242/331 (73%), Gaps = 4/331 (1%)
 Frame = -1

Query: 1410 PLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQERAT 1231
            PL+EDQ+          +   R  +R+ R +TG   Y  TLEQ +DPQ  LR SMQERA 
Sbjct: 24   PLYEDQIRDYRRGQRRIFNLRRQARRLRRSVTG-SRYQETLEQEIDPQTTLRLSMQERAR 82

Query: 1230 LVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMRFIHMG 1054
            LVPAEVLY SRRD  HHRVY HRSEE++L +  NQVDRAFIQ +S  QLQR+GM FIH+G
Sbjct: 83   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCIGNNQVDRAFIQPESLEQLQRTGMSFIHIG 142

Query: 1053 VIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLTISD 874
            ++QVRIQILHRQEEGT+ LVVFRDNRW GDQ+IFA ME+DLT  SQLV+V+PDTM+TI D
Sbjct: 143  ILQVRIQILHRQEEGTMALVVFRDNRWTGDQSIFAQMEIDLTKGSQLVFVVPDTMMTIGD 202

Query: 873  FYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHGVKA 694
            F +N+Q+SIL RGYE W+NGEAN+LITRGM GRLSNTPNV FAY++ +  DY  SHGVKA
Sbjct: 203  FARNVQLSILTRGYESWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 262

Query: 693  LPGRRYNTREFMGQNWIIRPSTINI-PLQPTEVTTNNLIDGRISLHFENYQATRTPTPPD 517
            + G++ N +    Q WI+RP   ++ P+QP  V T NL+DG IS+ F +Y+A  + + P 
Sbjct: 263  IAGKKLNLQHLRNQQWILRPPQADVTPMQPRSVETRNLVDGSISIRFHDYEAAPSTSRPH 322

Query: 516  YNSIDQENSNDDEEE-RMHLVAV-LVAEQDI 430
            YN  D+E  ++ E E R H VAV ++ E++I
Sbjct: 323  YNEEDEEIESEAESEIRDHTVAVWIIGEEEI 353


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  380 bits (977), Expect = e-102
 Identities = 194/335 (57%), Positives = 243/335 (72%), Gaps = 3/335 (0%)
 Frame = -1

Query: 1425 NTDGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSM 1246
            N +G PL+EDQ+          +   R  +R+ R + G   Y  TLEQ +DPQ  LR SM
Sbjct: 21   NREG-PLYEDQIRDYRRGQRRIFNLQRRARRLRRSMMG-SRYQETLEQEIDPQTTLRLSM 78

Query: 1245 QERATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMR 1069
            QERA LVPAEVLY SRRD  HHRVY HRSEE++L V  +QVDRAFIQ +S  QLQR+GM 
Sbjct: 79   QERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMS 138

Query: 1068 FIHMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTM 889
            FIH+G++QVRIQILHRQEEGT+ LVVFRDNRW GDQ+IFA ME+DLT  SQLV+VIPDTM
Sbjct: 139  FIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTM 198

Query: 888  LTISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTS 709
            +TI DF +N+Q+SIL RGYE W+NGEAN+LITRGM GRLSNTPNV FAY++ +  DY  S
Sbjct: 199  MTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLAS 258

Query: 708  HGVKALPGRRYNTREFMGQNWIIRPSTINI-PLQPTEVTTNNLIDGRISLHFENYQATRT 532
            HGVKA+ G++ N +    Q WI+RP   +I P+QP  V T NL+DG IS+ F +Y+A  +
Sbjct: 259  HGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFHDYEAATS 318

Query: 531  PTPPDYNSIDQENSNDDEEE-RMHLVAVLVAEQDI 430
             + P YN  D+E  ++ E E R H +AV + E++I
Sbjct: 319  ASRPHYNEEDEEVESETESEIREHTIAVWIGEEEI 353


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  380 bits (975), Expect = e-102
 Identities = 192/327 (58%), Positives = 236/327 (72%), Gaps = 4/327 (1%)
 Frame = -1

Query: 1419 DGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQE 1240
            D  PL++DQ+          +  GR   ++  R     PY  TLEQ +DP+V L+ SMQE
Sbjct: 25   DNTPLYDDQIRDYRQWQQRRHNMGRRWNQLIGR-----PYNQTLEQVVDPEVALQLSMQE 79

Query: 1239 RATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMRFI 1063
            RA LVPAEVLY SR DD HH+VY+HRSEEAIL V  +QVDR  IQ +S  QL RSGM FI
Sbjct: 80   RARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMPFI 139

Query: 1062 HMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLT 883
            HMG++QVRI ILHRQ EGT  LVVFRDNRWQGDQ+IFATME+DLT   Q+VY+IPDTM+T
Sbjct: 140  HMGIVQVRIPILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMT 199

Query: 882  ISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHG 703
            + DF +N+QISIL +GY  W+NGEAN+L+TRG+VGRLSNTPNV FAY++QNV DY  SHG
Sbjct: 200  VRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHG 259

Query: 702  VKALPGRRYNTREFMGQNWIIRPSTI-NIPLQPTEVTTNNLIDGRISLHFENYQATRTPT 526
            ++ALPGRRY+  +  GQ W +RPS I  +P+ PT V T N+IDG ISL F +YQ    P 
Sbjct: 260  IQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPA 319

Query: 525  PPDYNSIDQENSNDDEEE--RMHLVAV 451
            P  YN  D+E   D++EE  R H +A+
Sbjct: 320  PVAYNQHDEEIPPDEDEEQIRNHTIAL 346


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  380 bits (975), Expect = e-102
 Identities = 192/327 (58%), Positives = 237/327 (72%), Gaps = 4/327 (1%)
 Frame = -1

Query: 1419 DGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQE 1240
            D  PL++DQ+          +  GR   ++  R     PY  TLEQ +DP+V L+ SMQE
Sbjct: 25   DNTPLYDDQIRDYRQWQRRRHNMGRRWNQLIGR-----PYNQTLEQVVDPEVALQLSMQE 79

Query: 1239 RATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMRFI 1063
            RA LVPAEVLY SR DD HH+VY+HRSEEAIL V  +QVDR  IQ +S  QL RSGM FI
Sbjct: 80   RARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFI 139

Query: 1062 HMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLT 883
            +MG++QVRIQILHRQ EGT  LVVFRDNRWQGDQ+IFATME+DLT   Q+VY+IPDTM+T
Sbjct: 140  NMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMT 199

Query: 882  ISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHG 703
            + DF +N+QISIL +GY  W+NGEAN+L+TRG+VGRLSNTPNV FAY++QNV DY  SHG
Sbjct: 200  VRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHG 259

Query: 702  VKALPGRRYNTREFMGQNWIIRPSTI-NIPLQPTEVTTNNLIDGRISLHFENYQATRTPT 526
            ++ALPGRRY+  +  GQ W +RPS I  +P+ PT V T N+IDG ISL F +YQ    P 
Sbjct: 260  IQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPA 319

Query: 525  PPDYNSIDQENSNDDEEE--RMHLVAV 451
            P  YN  D+E   D++EE  R H +A+
Sbjct: 320  PVAYNQHDEEIPPDEDEEQIRNHTIAL 346


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  378 bits (970), Expect = e-102
 Identities = 191/327 (58%), Positives = 236/327 (72%), Gaps = 4/327 (1%)
 Frame = -1

Query: 1419 DGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQE 1240
            D  PL++DQ+          +  GR   ++  R     PY  TLEQ +DP+V L+ SMQE
Sbjct: 25   DNTPLYDDQIRDYRQWQRRRHNMGRRWNQLIGR-----PYNQTLEQVVDPEVALQLSMQE 79

Query: 1239 RATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMRFI 1063
            RA LVPAEVLY SR DD HH+VY+HRSEEAIL V  +QVDR  IQ +S  QL RSGM FI
Sbjct: 80   RARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFI 139

Query: 1062 HMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLT 883
            +MG++QVRIQILHRQ EGT  LVVFRDNRWQGDQ+IFATME+DLT   Q+VY+IPDTM+T
Sbjct: 140  NMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMT 199

Query: 882  ISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHG 703
            + DF +N+QISIL + Y  W+NGEAN+L+TRG+VGRLSNTPNV FAY++QNV DY  SHG
Sbjct: 200  VRDFCRNVQISILTKAYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHG 259

Query: 702  VKALPGRRYNTREFMGQNWIIRPSTI-NIPLQPTEVTTNNLIDGRISLHFENYQATRTPT 526
            ++ALPGRRY+  +  GQ W +RPS I  +P+ PT V T N+IDG ISL F +YQ    P 
Sbjct: 260  IQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPA 319

Query: 525  PPDYNSIDQENSNDDEEE--RMHLVAV 451
            P  YN  D+E   D++EE  R H +A+
Sbjct: 320  PVTYNQHDEEIPPDEDEEQIRNHTIAL 346


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  377 bits (967), Expect = e-101
 Identities = 194/338 (57%), Positives = 240/338 (71%), Gaps = 4/338 (1%)
 Frame = -1

Query: 1431 RTNTDGVPLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQ 1252
            R NT   PL++DQ+          +  GR   ++  R     PY  TLEQ +DP+V L+ 
Sbjct: 24   RNNT---PLYDDQIRDYRQWQRRRHNMGRRWNQLMGR-----PYNQTLEQVVDPEVALQL 75

Query: 1251 SMQERATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSG 1075
            SMQERA LVPAEVLY SR DD HH+VY+HRSEEAIL V  +QVDR  IQ +S  QL RSG
Sbjct: 76   SMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSG 135

Query: 1074 MRFIHMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPD 895
            M FIHMG++QVRIQILHRQ EGT  LVVFRDNRWQGDQ+IFATME+DLT   Q+VY+IPD
Sbjct: 136  MSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPD 195

Query: 894  TMLTISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYF 715
            TM+T+ DF +N+QISIL +GY  W+NGEAN+L+TRG+VGRLSNTP V FAY++QNV DY 
Sbjct: 196  TMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPIVAFAYQIQNVTDYL 255

Query: 714  TSHGVKALPGRRYNTREFMGQNWIIRPSTINI-PLQPTEVTTNNLIDGRISLHFENYQAT 538
             SHG++ALPGRRY+  +  GQ W +RPS I   P+ PT V T N+IDG ISL F +YQ  
Sbjct: 256  VSHGIQALPGRRYSAADVQGQQWFLRPSNIPADPMAPTNVATRNMIDGSISLRFNSYQPA 315

Query: 537  RTPTPPDYNSIDQENSNDDEEE--RMHLVAVLVAEQDI 430
              P P  YN  D+E   D++EE  R H+ A+   + ++
Sbjct: 316  PDPAPIAYNQHDEEIPPDEDEEQIRNHITALWREDNEV 353


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
            polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  376 bits (966), Expect = e-101
 Identities = 190/324 (58%), Positives = 234/324 (72%), Gaps = 3/324 (0%)
 Frame = -1

Query: 1410 PLFEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQERAT 1231
            PLFEDQ+          ++A +A++R   R+ GR  Y  TLEQ +DP+V+L QSMQERA 
Sbjct: 27   PLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRR-YNQTLEQIVDPEVELNQSMQERAN 85

Query: 1230 LVPAEVLYHSRRDDAHHRVYMHRSEEAILVTTNQVDRAFIQEDSFHQLQRSGMRFIHMGV 1051
            LVPAEVLY SRRD+ +H++Y HRSEEA+L    Q DR FIQ +SF +LQRSGM+FIH+GV
Sbjct: 86   LVPAEVLYRSRRDNINHQIYNHRSEEAMLCVGEQQDRMFIQPNSFQELQRSGMQFIHLGV 145

Query: 1050 IQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLTISDF 871
            +QVR+QILHR + GT+ LVVFRDNRWQGDQ+IFA  EVDLT  SQ+VYVIPDTM+ I DF
Sbjct: 146  LQVRLQILHRADGGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMIIGDF 205

Query: 870  YQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHGVKAL 691
            Y+N+QISI   GYE W+NGEAN+LITRGM GRLSNTPNVGFAY + +V DY  S GV+AL
Sbjct: 206  YRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQAL 265

Query: 690  PGRRYNTREFMGQNWIIRPSTINIPLQPTEVTTNNLIDGRISLHFENYQATRTPTPPDYN 511
            PGRRY +    G+NWIIR   I   + P  V T NLIDG IS    +Y     P  P YN
Sbjct: 266  PGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARSADYTQAPEPRQPHYN 325

Query: 510  SIDQENSNDDE---EERMHLVAVL 448
              D+E ++D+E   E + H+VA+L
Sbjct: 326  EQDEEVASDEEELAETQQHIVAML 349


>gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]
          Length = 1872

 Score =  374 bits (960), Expect = e-100
 Identities = 200/384 (52%), Positives = 256/384 (66%), Gaps = 13/384 (3%)
 Frame = -1

Query: 1410 PLFEDQVXXXXXXXXXXYLAGRALQRVARRITG-RGPYAYTLEQ*LDPQVQLRQSMQERA 1234
            PLFEDQV          +   +  +R  + +TG R  +  TLEQ +DPQV LR SMQERA
Sbjct: 23   PLFEDQVRNYRRNQRRLFNLRKKARRAQKALTGSRSRHQETLEQEIDPQVTLRLSMQERA 82

Query: 1233 TLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGMRFIHM 1057
             LVPAEVLY SRRD  HHRVY HRSEE+IL V  NQVDR FIQ  S  +LQR+GM FIH+
Sbjct: 83   RLVPAEVLYRSRRDTVHHRVYTHRSEESILCVGGNQVDRTFIQPSSLERLQRTGMSFIHI 142

Query: 1056 GVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLTIS 877
            G++QVRIQILHRQEEGT+ LVVFRDNRW GDQAIFA MEVDLT  SQLV+V+PDTM+TI 
Sbjct: 143  GILQVRIQILHRQEEGTMALVVFRDNRWAGDQAIFAQMEVDLTKGSQLVFVVPDTMMTIG 202

Query: 876  DFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHGVK 697
            DF +N+Q+SIL RGY+ W+NGEAN+L+TR M GRLSNTPNV FA ++ +  DY  SHGVK
Sbjct: 203  DFARNVQLSILTRGYDNWQNGEANLLVTRSMTGRLSNTPNVAFACQIASATDYLASHGVK 262

Query: 696  ALPGRRYNTREFMGQNWIIRPSTINI-PLQPTEVTTNNLIDGRISLHFENYQATRTPTPP 520
            A+ G++ N ++   Q W++RP   ++ P+QP  V T NLIDG IS+ F +Y+   + + P
Sbjct: 263  AIAGKKVNLQQLRNQQWVLRPPQADVLPMQPRSVETRNLIDGSISIRFHDYEVAPSTSGP 322

Query: 519  DYNSIDQENSNDDEEE-RMHLVAV-LVAEQDILVAEPEVILYIKKRSATAK-----TPKR 361
             YN  D+E  ++ E E R H VAV ++ E++       + ++ +  +   +     TP  
Sbjct: 323  HYNENDEEVESESEAEIREHTVAVWIIGEEEYPDDNGRIKVWEESSNGNGRFFRYYTPPS 382

Query: 360  ASKG---AVGYDLAIDQDYSIPPR 298
             S     A G+D   D DY   PR
Sbjct: 383  VSNEPIIATGWDDDEDDDYDYDPR 406


>ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus]
            gi|113901272|gb|ABI47983.1| ORF3 protein [Dioscorea
            bacilliform virus]
          Length = 1887

 Score =  352 bits (903), Expect = 4e-94
 Identities = 195/465 (41%), Positives = 278/465 (59%), Gaps = 1/465 (0%)
 Frame = -1

Query: 1404 FEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQERATLV 1225
            FEDQ+          Y   + L +    +T    YA TLEQ +DP+  L+ S  +RA+++
Sbjct: 16   FEDQIRDYRLGARRRYNLRQGLNKFKNVLTLGTYYAPTLEQQVDPERTLQLSAIKRASMI 75

Query: 1224 PAEVLYHSRRDDAHHRVYMHRSEEAILVTTNQVDRAFIQEDSFHQLQRSGMRFIHMGVIQ 1045
            PAEVLYH+R D  +H+VYMH SEEA L+  NQ D  FI+ +S+ +L+++ M+FIH+G++Q
Sbjct: 76   PAEVLYHARPDTVNHKVYMHWSEEADLIVNNQHDSTFIRPESYLELRKANMQFIHIGLMQ 135

Query: 1044 VRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLTISDFYQ 865
            VRIQ+LHR E GT+ L+VFRD  W+G ++  A MEVDLT  SQLVY+ P+    ++DFY 
Sbjct: 136  VRIQVLHRHEAGTMALIVFRDCSWKGRRSTIARMEVDLTKGSQLVYIAPNITKKLTDFYN 195

Query: 864  NIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHGVKALPG 685
            NIQ+SIL +GY+ ++N EAN+LIT+GM+GRLSNT NVGFAY V  V +YF +HGV+AL G
Sbjct: 196  NIQVSILTKGYDDYQNSEANLLITKGMIGRLSNTSNVGFAYTVDGVAEYFITHGVQALKG 255

Query: 684  RRYNTREFMGQNWIIRPSTINIPLQPTEVTTNNLIDGRISLHFENYQATRTPTPPDYNSI 505
                T +  G  W I+PS I +P QPT+     L DG +S+ F  Y+A           +
Sbjct: 256  MPMTTDDLQGTLWNIKPSRIIVPSQPTQAEDRELADGSVSMRFGAYKAAPA-------LM 308

Query: 504  DQENSNDDEEERMHLVAVLVAEQDILVAEPEVILYIKKRSATAKTPKRASKGAVGYDLAI 325
              E  + DE + ++++   V+            L IK     A  P+R + G+VGYDLA 
Sbjct: 309  SSEEFDSDENQVINVLTTTVSS-----------LLIKLMHRDAIIPQRITDGSVGYDLAA 357

Query: 324  DQDYSIPPRGQELLSTGVSIKVPEGTYARIAPRSSY-XXXXXXXXXXXIDSDYRGEVKIL 148
             +D  I PR   L+ TG++I+VP GTYA++  +SS+            +D DYRGE++I+
Sbjct: 358  CEDVVIQPRRPTLVKTGIAIEVPAGTYAQLYLKSSFALKTGLQITGGVVDPDYRGELQII 417

Query: 147  AHNFSDNTLFFKAGEYIAQIILECCKTPMVMPVLELDMTSRGEEG 13
              N +   +    G ++AQI+L    TP V     L  T RG  G
Sbjct: 418  LINNTFTCVPILKGTFVAQIVLHQVATPAVQETTTLTPTVRGTRG 462


>emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]
          Length = 1770

 Score =  352 bits (903), Expect = 4e-94
 Identities = 172/276 (62%), Positives = 212/276 (76%), Gaps = 3/276 (1%)
 Frame = -1

Query: 1248 MQERATLVPAEVLYHSRRDDAHHRVYMHRSEEAIL-VTTNQVDRAFIQEDSFHQLQRSGM 1072
            MQERA LVPAEVLY SRRD  HHRVY HRSEE++L V  NQVDRAFIQ +S  QLQR+GM
Sbjct: 1    MQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGM 60

Query: 1071 RFIHMGVIQVRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDT 892
             FI +G++QVRIQILHRQEEGT+ LVVFRDNRW GDQ+IFA ME+DLT  SQLV+VIPDT
Sbjct: 61   SFIQIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDT 120

Query: 891  MLTISDFYQNIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFT 712
            M+TI DF +N+Q+SIL RGYE W+NGEAN+LITRGM GRLSNTPNV FAY++ +  DY  
Sbjct: 121  MMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLA 180

Query: 711  SHGVKALPGRRYNTREFMGQNWIIRPSTINI-PLQPTEVTTNNLIDGRISLHFENYQATR 535
            SHGVKA+ G++ N +    Q WI+RP   +I P+QP  V T NL+DG IS+ F +Y+A  
Sbjct: 181  SHGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEAAT 240

Query: 534  TPTPPDYNSIDQENSNDDEEE-RMHLVAVLVAEQDI 430
            + + P YN  D+E  ++ E E R H VAV + E+++
Sbjct: 241  STSRPHYNEEDEEVESETESEIREHTVAVWIGEEEV 276


>gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]
          Length = 1295

 Score =  352 bits (902), Expect = 5e-94
 Identities = 194/465 (41%), Positives = 278/465 (59%), Gaps = 1/465 (0%)
 Frame = -1

Query: 1404 FEDQVXXXXXXXXXXYLAGRALQRVARRITGRGPYAYTLEQ*LDPQVQLRQSMQERATLV 1225
            FEDQ+          Y   + L +    +T    YA TLEQ +DP+  L+ S  +RA+++
Sbjct: 16   FEDQIRDYRLGARRRYNLRQGLNKFKNVLTLGTYYAPTLEQQVDPERTLQLSAIKRASMI 75

Query: 1224 PAEVLYHSRRDDAHHRVYMHRSEEAILVTTNQVDRAFIQEDSFHQLQRSGMRFIHMGVIQ 1045
            PAEVLYH+R D  +H+VYMH SEEA L+  NQ D  FI+ +S+ +L+++ M+FIH+G++Q
Sbjct: 76   PAEVLYHARPDTINHKVYMHWSEEADLIANNQHDSTFIRPESYLELRKANMQFIHIGLMQ 135

Query: 1044 VRIQILHRQEEGTLLLVVFRDNRWQGDQAIFATMEVDLTHDSQLVYVIPDTMLTISDFYQ 865
            VRIQ+LHR E GT+ L+VFRD  W+G ++  A MEVDLT  SQLVY+ P+    ++DFY 
Sbjct: 136  VRIQVLHRHEAGTMALIVFRDCSWKGRRSTIARMEVDLTKGSQLVYIAPNITKKLTDFYN 195

Query: 864  NIQISILARGYEGWRNGEANILITRGMVGRLSNTPNVGFAYEVQNVVDYFTSHGVKALPG 685
            NIQ+SIL +GY+ ++N EAN+LIT+GM+GRLSNT NVGFAY V  V +YF +HGV+AL G
Sbjct: 196  NIQVSILTKGYDDYQNSEANLLITKGMIGRLSNTSNVGFAYTVDGVAEYFITHGVQALKG 255

Query: 684  RRYNTREFMGQNWIIRPSTINIPLQPTEVTTNNLIDGRISLHFENYQATRTPTPPDYNSI 505
                T +  G  W I+PS I +P QPT+     L DG +S+ F  Y+A           +
Sbjct: 256  MPMTTDDLQGTLWNIKPSRIIVPSQPTQAEDRELADGSVSMRFGAYKAAPA-------LM 308

Query: 504  DQENSNDDEEERMHLVAVLVAEQDILVAEPEVILYIKKRSATAKTPKRASKGAVGYDLAI 325
              E  + DE + +++    V+            L IK     A  P+R + G+VGYDLA 
Sbjct: 309  SSEEFDSDENQVINVFTTTVSS-----------LLIKLMHRDAIIPQRITDGSVGYDLAA 357

Query: 324  DQDYSIPPRGQELLSTGVSIKVPEGTYARIAPRSSY-XXXXXXXXXXXIDSDYRGEVKIL 148
             +D  I PR   L+ TG++I+VP GTYA++  +SS+            +D DYRGE++I+
Sbjct: 358  CEDVVIQPRRPTLVKTGIAIEVPAGTYAQLYLKSSFALKTGLQITGGVVDPDYRGELQII 417

Query: 147  AHNFSDNTLFFKAGEYIAQIILECCKTPMVMPVLELDMTSRGEEG 13
              N +   +    G ++AQ++L    TP V     L  T+RG  G
Sbjct: 418  LINNTFTCVPILKGTFVAQVVLHQVATPAVQETTTLTPTARGTRG 462