BLASTX nr result
ID: Zingiber24_contig00037197
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00037197
(216 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 137 1e-30
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 137 1e-30
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 135 4e-30
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 135 4e-30
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 134 1e-29
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 134 1e-29
gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 130 2e-28
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 130 2e-28
gb|EMS65535.1| DNA-directed RNA polymerase III subunit RPC1 [Tri... 130 2e-28
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 130 2e-28
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 126 3e-27
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 126 3e-27
gb|ACJ63308.1| RNA polymerase III large subunit [Drimys winteri] 125 8e-27
gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus offic... 124 2e-26
gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tu... 121 8e-26
gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale] 120 1e-25
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 119 5e-25
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 119 5e-25
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 117 2e-24
gb|AAS79694.1| RNA polymerase III large subunit [Pinus nigra] 116 3e-24
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 137 bits (345), Expect = 1e-30
Identities = 64/71 (90%), Positives = 70/71 (98%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQFLYG DGMDPAKMEGKDG+PLN
Sbjct: 863 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGMPLN 922
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 923 LDQLFMKVMAT 933
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 137 bits (345), Expect = 1e-30
Identities = 64/71 (90%), Positives = 70/71 (98%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQFLYG DGMDPAKMEGKDG+PLN
Sbjct: 860 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGMPLN 919
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 920 LDQLFMKVMAT 930
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 135 bits (341), Expect = 4e-30
Identities = 64/71 (90%), Positives = 69/71 (97%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQFLYG DGMDPAKMEGKDG PLN
Sbjct: 791 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLN 850
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 851 LDQLFMKVMAT 861
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 135 bits (341), Expect = 4e-30
Identities = 64/71 (90%), Positives = 69/71 (97%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQFLYG DGMDPAKMEGKDG PLN
Sbjct: 853 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLN 912
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 913 LDQLFMKVMAT 923
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 134 bits (337), Expect = 1e-29
Identities = 63/71 (88%), Positives = 69/71 (97%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQFLYG DGMDPAKMEG+DG PLN
Sbjct: 864 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGEDGKPLN 923
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 924 LDQLFMKVMAT 934
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 134 bits (337), Expect = 1e-29
Identities = 63/71 (88%), Positives = 68/71 (95%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQFLYG DGMDPAKMEGKDG PLN
Sbjct: 866 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGTPLN 925
Query: 34 MDQLFMKIMAT 2
+DQLFMK+ AT
Sbjct: 926 LDQLFMKVTAT 936
>gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 832
Score = 130 bits (327), Expect = 2e-28
Identities = 61/71 (85%), Positives = 67/71 (94%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQF+YG DGMDP KMEGK G PLN
Sbjct: 314 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKMEGKGGRPLN 373
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 374 LDQLFMKVMAT 384
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 130 bits (327), Expect = 2e-28
Identities = 61/71 (85%), Positives = 67/71 (94%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQF+YG DGMDP KMEGK G PLN
Sbjct: 578 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKMEGKGGNPLN 637
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 638 LDQLFMKVMAT 648
>gb|EMS65535.1| DNA-directed RNA polymerase III subunit RPC1 [Triticum urartu]
Length = 689
Score = 130 bits (327), Expect = 2e-28
Identities = 61/71 (85%), Positives = 67/71 (94%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQF+YG DGMDP KMEGK G PLN
Sbjct: 200 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKMEGKGGRPLN 259
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 260 LDQLFMKVMAT 270
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 130 bits (327), Expect = 2e-28
Identities = 61/71 (85%), Positives = 67/71 (94%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNASGG+VQF+YG DGMDP KMEGK G PLN
Sbjct: 709 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKMEGKGGNPLN 768
Query: 34 MDQLFMKIMAT 2
+DQLFMK+MAT
Sbjct: 769 LDQLFMKVMAT 779
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 126 bits (316), Expect = 3e-27
Identities = 59/71 (83%), Positives = 65/71 (91%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMKGLEDLS++YDQTVRNAS G+VQF+YG DGMDP KMEGK G PLN
Sbjct: 860 AVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQFVYGDDGMDPVKMEGKGGSPLN 919
Query: 34 MDQLFMKIMAT 2
+DQLFMK+ AT
Sbjct: 920 LDQLFMKVKAT 930
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 126 bits (316), Expect = 3e-27
Identities = 58/71 (81%), Positives = 66/71 (92%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTA+TGY+SRRLMKGLEDLS++YDQTVRNASGG+VQF+YG DGMDP KMEGK G PLN
Sbjct: 863 AVKTADTGYLSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKMEGKGGSPLN 922
Query: 34 MDQLFMKIMAT 2
+DQLFMK+ AT
Sbjct: 923 LDQLFMKVKAT 933
>gb|ACJ63308.1| RNA polymerase III large subunit [Drimys winteri]
Length = 547
Score = 125 bits (313), Expect = 8e-27
Identities = 60/71 (84%), Positives = 65/71 (91%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMK LEDLSI+YD+TVRNASGG+VQF YG DGMDPAKMEGK G PLN
Sbjct: 353 AVKTAETGYMSRRLMKALEDLSIHYDETVRNASGGIVQFHYGDDGMDPAKMEGKSGTPLN 412
Query: 34 MDQLFMKIMAT 2
+D+LFMKI AT
Sbjct: 413 LDRLFMKIQAT 423
>gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus officinalis]
Length = 544
Score = 124 bits (310), Expect = 2e-26
Identities = 57/71 (80%), Positives = 67/71 (94%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMK LEDLS+YYDQTVR+++GGVVQF+YG DGMDPAKMEG++G PLN
Sbjct: 353 AVKTAETGYMSRRLMKSLEDLSLYYDQTVRSSNGGVVQFIYGDDGMDPAKMEGENGTPLN 412
Query: 34 MDQLFMKIMAT 2
+DQL+ K+MAT
Sbjct: 413 LDQLYKKVMAT 423
>gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tulipifera]
Length = 546
Score = 121 bits (304), Expect = 8e-26
Identities = 57/71 (80%), Positives = 64/71 (90%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMK LEDLS YYD+TVRN+SGG+VQ LYG DGMDPA MEGK+G+PLN
Sbjct: 355 AVKTAETGYMSRRLMKSLEDLSTYYDETVRNSSGGIVQLLYGDDGMDPANMEGKEGMPLN 414
Query: 34 MDQLFMKIMAT 2
+D+LFMK AT
Sbjct: 415 LDRLFMKTKAT 425
>gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale]
Length = 554
Score = 120 bits (302), Expect = 1e-25
Identities = 56/71 (78%), Positives = 66/71 (92%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTA+TGYMSRRL+K LEDLSI+YD TVR+ASGGVVQFLYG DGMDP++MEGKDG PLN
Sbjct: 353 AVKTADTGYMSRRLIKALEDLSIHYDSTVRSASGGVVQFLYGDDGMDPSRMEGKDGTPLN 412
Query: 34 MDQLFMKIMAT 2
+D+L+MK+ AT
Sbjct: 413 LDRLYMKVKAT 423
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 119 bits (297), Expect = 5e-25
Identities = 55/71 (77%), Positives = 64/71 (90%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTA+TGYMSRRLMK LEDLSI YD+TVRNA+G +VQFLYG DGMDPA+MEGKDG PLN
Sbjct: 859 AVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMDPARMEGKDGFPLN 918
Query: 34 MDQLFMKIMAT 2
++LF+K+ AT
Sbjct: 919 FNRLFLKVKAT 929
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 119 bits (297), Expect = 5e-25
Identities = 55/71 (77%), Positives = 64/71 (90%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTA+TGYMSRRLMK LEDLSI YD+TVRNA+G +VQFLYG DGMDPA+MEGKDG PLN
Sbjct: 859 AVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMDPARMEGKDGFPLN 918
Query: 34 MDQLFMKIMAT 2
++LF+K+ AT
Sbjct: 919 FNRLFLKVKAT 929
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 117 bits (292), Expect = 2e-24
Identities = 55/71 (77%), Positives = 63/71 (88%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTA+TGYMSRRL+KGLEDLSI YD TVRNASG +VQFLYG DG+DPA MEGK G+PLN
Sbjct: 840 AVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPLN 899
Query: 34 MDQLFMKIMAT 2
+D+LF K+ AT
Sbjct: 900 LDRLFSKVKAT 910
>gb|AAS79694.1| RNA polymerase III large subunit [Pinus nigra]
Length = 548
Score = 116 bits (291), Expect = 3e-24
Identities = 57/71 (80%), Positives = 60/71 (84%)
Frame = -3
Query: 214 AVKTAETGYMSRRLMKGLEDLSIYYDQTVRNASGGVVQFLYGGDGMDPAKMEGKDGIPLN 35
AVKTAETGYMSRRLMK LEDLS +YD TVRNASGG+VQ LYG DGMDPA MEG DG PLN
Sbjct: 355 AVKTAETGYMSRRLMKALEDLSTHYDGTVRNASGGIVQLLYGDDGMDPAHMEGNDGAPLN 414
Query: 34 MDQLFMKIMAT 2
MD+L MK AT
Sbjct: 415 MDRLLMKTKAT 425