BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00036978
         (662 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006401381.1| hypothetical protein EUTSA_v10013799mg [Eutr...   111   2e-22
ref|NP_189872.1| CCHC-type zinc knuckle protein [Arabidopsis tha...   108   1e-21
gb|ABA18102.1| zinc knuckle family protein [Olimarabidopsis pumila]   107   4e-21
ref|XP_002875595.1| zinc knuckle family protein [Arabidopsis lyr...   104   2e-20
ref|XP_006292441.1| hypothetical protein CARUB_v10018659mg [Caps...   103   5e-20
ref|XP_002463774.1| hypothetical protein SORBIDRAFT_01g005940 [S...    97   6e-18
ref|XP_004981536.1| PREDICTED: DNA-binding protein HEXBP-like [S...    95   2e-17
dbj|BAJ93454.1| predicted protein [Hordeum vulgare subsp. vulgare]     94   4e-17
gb|EEC76291.1| hypothetical protein OsI_13802 [Oryza sativa Indi...    92   1e-16
ref|NP_001051489.1| Os03g0786500 [Oryza sativa Japonica Group] g...    92   1e-16
ref|XP_003326221.2| DNA topoisomerase III [Puccinia graminis f. ...    89   1e-15
gb|AFR97615.2| DNA topoisomerase III [Cryptococcus neoformans va...    88   2e-15
tpg|DAA51786.1| TPA: hypothetical protein ZEAMMB73_750935 [Zea m...    88   2e-15
gb|ESK92041.1| zinc knuckle family protein [Moniliophthora rorer...    87   3e-15
ref|XP_003569087.1| PREDICTED: replication protein A 70 kDa DNA-...    87   3e-15
gb|EIW71276.1| hypothetical protein TREMEDRAFT_73248 [Tremella m...    87   4e-15
ref|XP_006290832.1| hypothetical protein CARUB_v10016948mg [Caps...    87   6e-15
ref|XP_003055674.1| RNA binding protein [Micromonas pusilla CCMP...    87   6e-15
ref|XP_006651886.1| PREDICTED: DNA topoisomerase 3-alpha-like [O...    85   2e-14
ref|XP_004345843.1| uracilDNA glycosylase [Acanthamoeba castella...    84   3e-14

>ref|XP_006401381.1| hypothetical protein EUTSA_v10013799mg [Eutrema salsugineum]
           gi|557102471|gb|ESQ42834.1| hypothetical protein
           EUTSA_v10013799mg [Eutrema salsugineum]
          Length = 384

 Score =  111 bits (277), Expect = 2e-22
 Identities = 54/142 (38%), Positives = 79/142 (55%)
 Frame = -1

Query: 662 PVFKGKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHW 483
           PVF+G SC  FKW C+  A  S T      S    ++ +      +  + CY+CG+EGHW
Sbjct: 198 PVFEG-SCGFFKW-CNDDAVSSATTYSFTKSSNFGESDTRGYQTAKTGTPCYKCGKEGHW 255

Query: 482 HRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTDASVGTG 303
            RDC     + S +  + TG   +S+++  C++CG+ GHWARDC  +  S + ++  G  
Sbjct: 256 ARDCT----AQSVNPLSETGPVKSSSAAGDCYKCGKQGHWARDCTSQ--SGNLNSEAGQV 309

Query: 302 KKSSGSNKCFKCCKLGHWAREC 237
           K SS    C+KC K GHWAR+C
Sbjct: 310 KPSSSGGDCYKCGKPGHWARDC 331


>ref|NP_189872.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana]
           gi|7529257|emb|CAB86673.1| putative protein [Arabidopsis
           thaliana] gi|17529084|gb|AAL38752.1| unknown protein
           [Arabidopsis thaliana] gi|22136980|gb|AAM91719.1|
           unknown protein [Arabidopsis thaliana]
           gi|332644235|gb|AEE77756.1| CCHC-type zinc knuckle
           protein [Arabidopsis thaliana]
          Length = 372

 Score =  108 bits (270), Expect = 1e-21
 Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
 Frame = -1

Query: 662 PVFKGKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQC------NERDNSRCYRC 501
           PVF+G SC  FKW  D        V+   TS  ++KNS+          N +  + CY+C
Sbjct: 191 PVFEG-SCGFFKWCNDN-------VVSSPTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKC 242

Query: 500 GEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTD 321
           G+EGHW RDC         + ++ TG   +++++  CF+CG+ GHW+RDC  +  S +  
Sbjct: 243 GKEGHWARDC---------TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQ--SGNPK 291

Query: 320 ASVGTGKKSSGSNKCFKCCKLGHWAREC 237
              G  K SS S +C+KC K GHW+R+C
Sbjct: 292 YEPGQMKSSSSSGECYKCGKQGHWSRDC 319



 Score = 67.0 bits (162), Expect = 5e-09
 Identities = 23/66 (34%), Positives = 43/66 (65%)
 Frame = -1

Query: 521 NSRCYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKK 342
           +  CY+CG++GHW RDC  +    S + +  +G+  +++S+  C++CG+ GHW+RDC   
Sbjct: 303 SGECYKCGKQGHWSRDCTGQ----SSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSP 358

Query: 341 LSSSST 324
             +++T
Sbjct: 359 AQTTNT 364


>gb|ABA18102.1| zinc knuckle family protein [Olimarabidopsis pumila]
          Length = 369

 Score =  107 bits (266), Expect = 4e-21
 Identities = 59/148 (39%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
 Frame = -1

Query: 662 PVFKGKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERD------NSRCYRC 501
           PVF+G SC  FKW  D A       +   TS  ++KNS+    + R        + CY+C
Sbjct: 183 PVFEG-SCGFFKWCNDDA-------VSAPTSYSVTKNSNLGDSDTRGYQIAKTGTPCYKC 234

Query: 500 GEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTD 321
           G+EGHW RDC   L S    SE   G   +++++  C++CG+ GHWARDC  +  S +  
Sbjct: 235 GKEGHWARDCT--LQSPIPPSE--MGPVRSTSAAGECYKCGKQGHWARDCTAQ--SGNPT 288

Query: 320 ASVGTGKKSSGSNKCFKCCKLGHWAREC 237
              G  K SS S +C+KC K GHWAR+C
Sbjct: 289 YEPGKVKSSSSSGECYKCGKQGHWARDC 316



 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 25/66 (37%), Positives = 43/66 (65%)
 Frame = -1

Query: 521 NSRCYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKK 342
           +  CY+CG++GHW RDC  +    S + +  +G+  +++S+  C++CG+ GHWARDC   
Sbjct: 300 SGECYKCGKQGHWARDCTGQ----SGNQQFQSGQAKSTSSAGDCYKCGKPGHWARDCTLA 355

Query: 341 LSSSST 324
             ++ST
Sbjct: 356 AQTTST 361


>ref|XP_002875595.1| zinc knuckle family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297321433|gb|EFH51854.1| zinc knuckle family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 337

 Score =  104 bits (260), Expect = 2e-20
 Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
 Frame = -1

Query: 662 PVFKGKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERD------NSRCYRC 501
           PVF+G SC  FKW  D A       +   TS  ++KNS+    + R        + CY+C
Sbjct: 187 PVFEG-SCGFFKWCNDNA-------VSSPTSYSVTKNSNLGDSDTRGYQTAKTGAPCYKC 238

Query: 500 GEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTD 321
           G+EGHW RDC     + S +     G+  +S+SS  C++CG+ GHWA+DC  +  S    
Sbjct: 239 GKEGHWARDCT----AQSGNPTYEAGQVKSSSSSGECYKCGKQGHWAKDCTGQ--SGDPQ 292

Query: 320 ASVGTGKKSSGSNKCFKCCKLGHWAREC 237
                 K ++    C+KC K GHWAR+C
Sbjct: 293 FQSRQAKSTTSGGDCYKCGKPGHWARDC 320


>ref|XP_006292441.1| hypothetical protein CARUB_v10018659mg [Capsella rubella]
           gi|482561148|gb|EOA25339.1| hypothetical protein
           CARUB_v10018659mg [Capsella rubella]
          Length = 433

 Score =  103 bits (257), Expect = 5e-20
 Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
 Frame = -1

Query: 662 PVFKGKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHW 483
           PVF+G SC  FKW  D +   S T      S     ++   Q   +  + CY+CG+EGHW
Sbjct: 186 PVFEG-SCGFFKWCNDDSVSASTTYSVTNNSNICESDTRGYQ-TAKTGTPCYKCGKEGHW 243

Query: 482 HRDCP----NRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTDAS 315
            RDC     N LP         TG+  +++++  C++CG+ GHWARDC   + S +    
Sbjct: 244 ARDCTVQSGNPLPE--------TGQLKSTSATGDCYKCGKQGHWARDC--TVQSGNLLPE 293

Query: 314 VGTGKKSSGSNKCFKCCKLGHWAREC 237
            G  K +S +  C+KC K GHWAR+C
Sbjct: 294 TGQLKSTSATGDCYKCGKQGHWARDC 319



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 36/94 (38%), Positives = 56/94 (59%)
 Frame = -1

Query: 512 CYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSS 333
           CY+CG+ GHW RDC  +  S +   ++   K  + +++  C++CG+ GHWARDC  +  S
Sbjct: 342 CYKCGKHGHWARDCTGQ--SGNQQFQSGQVKSTSPSAAGDCYKCGKPGHWARDCTGQ--S 397

Query: 332 SSTDASVGTGKKSSGSNKCFKCCKLGHWARECPN 231
            +     G  K ++ +  C+KC K GHWAR+C N
Sbjct: 398 GNQQFQSGQAKSTTSARDCYKCGKPGHWARDCTN 431



 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 36/92 (39%), Positives = 53/92 (57%)
 Frame = -1

Query: 512 CYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSS 333
           CY+CG++GHW RDC     + S +     G+  +S+SS  C++CG+ GHWARDC  +  +
Sbjct: 306 CYKCGKQGHWARDCT----AQSGNPTYEPGQGKSSSSSVECYKCGKHGHWARDCTGQSGN 361

Query: 332 SSTDASVGTGKKSSGSNKCFKCCKLGHWAREC 237
               +        S +  C+KC K GHWAR+C
Sbjct: 362 QQFQSGQVKSTSPSAAGDCYKCGKPGHWARDC 393


>ref|XP_002463774.1| hypothetical protein SORBIDRAFT_01g005940 [Sorghum bicolor]
           gi|241917628|gb|EER90772.1| hypothetical protein
           SORBIDRAFT_01g005940 [Sorghum bicolor]
          Length = 366

 Score = 96.7 bits (239), Expect = 6e-18
 Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
 Frame = -1

Query: 650 GKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNS--STRQCNERDNSRCYRCGEEGHWHR 477
           G SC  FKW CD         + Q+ S +   +S  S +  ++R +S C++CG+E HW R
Sbjct: 236 GGSCGFFKW-CDEQQPRVGAPLQQQASPQYQADSMSSIQNPSQRSSSSCFKCGQENHWAR 294

Query: 476 DCPNRLPSSSDSSENTTGKPPASTSS-NSCFRCGEDGHWARDCPKKLSSSSTDASVGTGK 300
           DCPN+   SSD   +  G+P  S+SS  +C+ CG  GHW+RDCP   S        GT +
Sbjct: 295 DCPNQ---SSDPYPDKGGRPITSSSSPGACYNCGRPGHWSRDCPTSNSGGGGSGGTGTNR 351

Query: 299 KSSGS 285
             S S
Sbjct: 352 AKSSS 356



 Score = 72.0 bits (175), Expect = 1e-10
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = -1

Query: 416 PASTSSNSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWAREC 237
           P+  SS+SCF+CG++ HWARDCP + S    D        SS    C+ C + GHW+R+C
Sbjct: 275 PSQRSSSSCFKCGQENHWARDCPNQSSDPYPDKGGRPITSSSSPGACYNCGRPGHWSRDC 334

Query: 236 PNLQKG 219
           P    G
Sbjct: 335 PTSNSG 340


>ref|XP_004981536.1| PREDICTED: DNA-binding protein HEXBP-like [Setaria italica]
          Length = 370

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
 Frame = -1

Query: 650 GKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHWHRDC 471
           G SC  FKW CD         +      +    SS +  N+R +S C++CG+E HW RDC
Sbjct: 242 GGSCGFFKW-CDEQQPRVGAPLQASPQYQTDATSSIQNSNKRSSSSCFKCGQENHWARDC 300

Query: 470 PNRLPSSSDSSENTTGKPPASTSS-NSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKS 294
           PN+   SSD   +  G+   S SS + CF+CG+ GHW+R+CP       T  S G G   
Sbjct: 301 PNQ---SSDPYPDKGGRTITSASSPDGCFKCGKAGHWSRECP-------TSNSGGGGGGG 350

Query: 293 SGSNKCFKCCKLGHW 249
           +G+++      LG W
Sbjct: 351 TGASRAKSSSALGSW 365



 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 56/175 (32%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
 Frame = -1

Query: 662 PVFKGKSCDLFKWLCDR-----AAQHSLTVIDQETSKE--LSKNSS------TRQCNERD 522
           P+     C+ F+W CD      A   S TV   ETS    L    +      T +  +  
Sbjct: 171 PLRDNGGCNFFEW-CDAPSPGPANARSNTVFQSETSATDMLCPCGAGACLILTTKTGKNV 229

Query: 521 NSRCYRC-GEEGH----WHRDCPNRLP-------SSSDSSENTTGKPPAST--SSNSCFR 384
             + YRC G +G     + + C  + P       +S     + T     S   SS+SCF+
Sbjct: 230 GRQFYRCPGNQGGGSCGFFKWCDEQQPRVGAPLQASPQYQTDATSSIQNSNKRSSSSCFK 289

Query: 383 CGEDGHWARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWARECPNLQKG 219
           CG++ HWARDCP + S    D    T   +S  + CFKC K GHW+RECP    G
Sbjct: 290 CGQENHWARDCPNQSSDPYPDKGGRTITSASSPDGCFKCGKAGHWSRECPTSNSG 344


>dbj|BAJ93454.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 371

 Score = 94.0 bits (232), Expect = 4e-17
 Identities = 53/142 (37%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
 Frame = -1

Query: 662 PVFKGKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHW 483
           P   G SC  FKW CD     +   +   +S   +  S T Q   + +S C++CG+E HW
Sbjct: 237 PAQGGSSCGFFKW-CDDQQPRTAAPLQGASSPYQAGASPTNQNMSKSSSGCFKCGQENHW 295

Query: 482 HRDCPNRLPSSSDSSENTTGKPPAS-TSSNSCFRCGEDGHWARDCPKKLS---SSSTDAS 315
            +DCPN+   SSD   +  G+  +S TSS+ CF+CG+ GHW+RDCP   S        A+
Sbjct: 296 AKDCPNQ---SSDPCSDKGGRTLSSATSSDGCFKCGKAGHWSRDCPVTNSGGGGGGGGAA 352

Query: 314 VGTGKKSSGSNKCFKCCKLGHW 249
           VG+  KSS +        LG W
Sbjct: 353 VGSNVKSSST--------LGSW 366



 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
 Frame = -1

Query: 509 YRCGEEG-------HWHRDCPNRL--PSSSDSSENTTGKPPA----STSSNSCFRCGEDG 369
           YRC  +G        W  D   R   P    SS    G  P     S SS+ CF+CG++ 
Sbjct: 234 YRCPAQGGSSCGFFKWCDDQQPRTAAPLQGASSPYQAGASPTNQNMSKSSSGCFKCGQEN 293

Query: 368 HWARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWARECPNLQKG 219
           HWA+DCP + S   +D    T   ++ S+ CFKC K GHW+R+CP    G
Sbjct: 294 HWAKDCPNQSSDPCSDKGGRTLSSATSSDGCFKCGKAGHWSRDCPVTNSG 343


>gb|EEC76291.1| hypothetical protein OsI_13802 [Oryza sativa Indica Group]
          Length = 384

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
 Frame = -1

Query: 650 GKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHWHRDC 471
           G SC  FKW CD     +   +   T       SS +  ++R +S C++CG+E HW +DC
Sbjct: 260 GSSCGYFKW-CDEQQLRTAAPLQASTQYHTDVASSGQIPSKRSSSACFKCGQENHWAKDC 318

Query: 470 PNRLPSSSDSSENTTGKPPASTSS-NSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKS 294
           PN+   SSD   +  G+   S SS ++CF+CG+ GHW+RDCP     SST +S      +
Sbjct: 319 PNQ---SSDPYPDKGGRTFTSASSPDACFKCGKSGHWSRDCPTANCGSSTVSSHVKSSST 375

Query: 293 SGS 285
            GS
Sbjct: 376 LGS 378



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
 Frame = -1

Query: 590 VIDQETSKELSKNSSTRQCNERDNSRCY-RCGEEGHWHRDCPNRLPSSSDSSENTTGKPP 414
           ++  +T K + +       N+  +S  Y +  +E       P +  +   +   ++G+ P
Sbjct: 238 ILTTKTGKNVGRQFYRCPANQGGSSCGYFKWCDEQQLRTAAPLQASTQYHTDVASSGQIP 297

Query: 413 ASTSSNSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWARECP 234
           +  SS++CF+CG++ HWA+DCP + S    D    T   +S  + CFKC K GHW+R+CP
Sbjct: 298 SKRSSSACFKCGQENHWAKDCPNQSSDPYPDKGGRTFTSASSPDACFKCGKSGHWSRDCP 357

Query: 233 NLQKG 219
               G
Sbjct: 358 TANCG 362


>ref|NP_001051489.1| Os03g0786500 [Oryza sativa Japonica Group]
           gi|50355715|gb|AAT75240.1| putative DNA-binding protein
           [Oryza sativa Japonica Group]
           gi|108711439|gb|ABF99234.1| GRF zinc finger family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113549960|dbj|BAF13403.1| Os03g0786500 [Oryza sativa
           Japonica Group] gi|215741242|dbj|BAG97737.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|222625927|gb|EEE60059.1| hypothetical protein
           OsJ_12863 [Oryza sativa Japonica Group]
          Length = 384

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
 Frame = -1

Query: 650 GKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHWHRDC 471
           G SC  FKW CD     +   +   T       SS +  ++R +S C++CG+E HW +DC
Sbjct: 260 GSSCGYFKW-CDEQQLRTAAPLQASTQYHTDVASSGQIPSKRSSSACFKCGQENHWAKDC 318

Query: 470 PNRLPSSSDSSENTTGKPPASTSS-NSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKS 294
           PN+   SSD   +  G+   S SS ++CF+CG+ GHW+RDCP     SST +S      +
Sbjct: 319 PNQ---SSDPYPDKGGRTFTSASSPDACFKCGKSGHWSRDCPTANCGSSTVSSHVKSSST 375

Query: 293 SGS 285
            GS
Sbjct: 376 LGS 378



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
 Frame = -1

Query: 590 VIDQETSKELSKNSSTRQCNERDNSRCY-RCGEEGHWHRDCPNRLPSSSDSSENTTGKPP 414
           ++  +T K + +       N+  +S  Y +  +E       P +  +   +   ++G+ P
Sbjct: 238 ILTTKTGKNVGRQFYRCPANQGGSSCGYFKWCDEQQLRTAAPLQASTQYHTDVASSGQIP 297

Query: 413 ASTSSNSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWARECP 234
           +  SS++CF+CG++ HWA+DCP + S    D    T   +S  + CFKC K GHW+R+CP
Sbjct: 298 SKRSSSACFKCGQENHWAKDCPNQSSDPYPDKGGRTFTSASSPDACFKCGKSGHWSRDCP 357

Query: 233 NLQKG 219
               G
Sbjct: 358 TANCG 362


>ref|XP_003326221.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
            75-36-700-3] gi|375166208|gb|EFP81802.2| DNA
            topoisomerase III [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1124

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
 Frame = -1

Query: 659  VFKGKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHWH 480
            V K   C  FKW             D+      +  SST      D + C++CG++GHW 
Sbjct: 952  VSKVAQCKFFKWE------------DELEGGGPAAGSSTTTSTSADKTGCFKCGQQGHWS 999

Query: 479  RDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTDASVGTGK 300
             +CPN    +++ S   +G      S+ +CF C E GH +  CP K      D  VG   
Sbjct: 1000 SECPNPSQGNNNKSIQPSG------SNYTCFSCNEQGHLSTTCPNK------DGPVGGKG 1047

Query: 299  KSSGSN---KCFKCCKLGHWARECPNLQKG 219
            K+ GS    KCF C ++GHWA  CP+   G
Sbjct: 1048 KAGGSTTGQKCFHCNQVGHWANACPSKNDG 1077


>gb|AFR97615.2| DNA topoisomerase III [Cryptococcus neoformans var. grubii H99]
          Length = 1021

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 42/116 (36%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
 Frame = -1

Query: 521  NSRCYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNS------------CFRCG 378
            +  CY+CGE GHW   CPN +      S ++  K  +   S              C++CG
Sbjct: 888  SGECYKCGEAGHWANACPNNVGGREGGSFSSNAKSSSKALSRGKSGGSGSDVFGVCYKCG 947

Query: 377  EDGHWARDCPKKLSSSSTDASVGTGKKSSG---SNKCFKCCKLGHWARECPNLQKG 219
            E GHWA +CP    +++    VG G   SG   S  CFKC + GHWA  CPN + G
Sbjct: 948  EQGHWATNCP----NNTCGGGVGVGAGGSGGGTSGDCFKCNQPGHWASNCPNDEGG 999



 Score = 60.1 bits (144), Expect = 6e-07
 Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
 Frame = -1

Query: 506  RCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKL---- 339
            RCG    W  D PN     S   +   G      SS  C++CGE GHWA  CP  +    
Sbjct: 856  RCGFF-QWEDD-PNLGDGGSSGGDGYNGGGGGG-SSGECYKCGEAGHWANACPNNVGGRE 912

Query: 338  ----SSSSTDASVGTGK-KSSGSNK-----CFKCCKLGHWARECPN 231
                SS++  +S    + KS GS       C+KC + GHWA  CPN
Sbjct: 913  GGSFSSNAKSSSKALSRGKSGGSGSDVFGVCYKCGEQGHWATNCPN 958



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
 Frame = -1

Query: 512  CYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPK---- 345
            CY+CGE+GHW  +CPN   ++               +S  CF+C + GHWA +CP     
Sbjct: 943  CYKCGEQGHWATNCPN---NTCGGGVGVGAGGSGGGTSGDCFKCNQPGHWASNCPNDEGG 999

Query: 344  ----KLSSSSTDASVGTGK 300
                + SSSS     G G+
Sbjct: 1000 GSSYRGSSSSRGRGRGRGR 1018


>tpg|DAA51786.1| TPA: hypothetical protein ZEAMMB73_750935 [Zea mays]
          Length = 369

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
 Frame = -1

Query: 650 GKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHWHRDC 471
           G SC  FKW CD         +      +     S +  ++R +S C++CG+E HW RDC
Sbjct: 244 GGSCGFFKW-CDELQPRVGAPLQASAQYQADSMPSIQNPSQRSSSSCFKCGQENHWARDC 302

Query: 470 PNRLPSSSDSSENTTGKPPASTSS-NSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKS 294
           PN+    SD   +  G+P A   S  +C+ CG  GHW+RDCP   +S+S     GT +  
Sbjct: 303 PNQ---PSDPYPDKGGRPVAPAGSPGACYNCGRSGHWSRDCP---TSNSGGGGTGTSRAR 356

Query: 293 SGS 285
           S S
Sbjct: 357 SSS 359



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 26/66 (39%), Positives = 37/66 (56%)
 Frame = -1

Query: 416 PASTSSNSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWAREC 237
           P+  SS+SCF+CG++ HWARDCP + S    D        +     C+ C + GHW+R+C
Sbjct: 281 PSQRSSSSCFKCGQENHWARDCPNQPSDPYPDKGGRPVAPAGSPGACYNCGRSGHWSRDC 340

Query: 236 PNLQKG 219
           P    G
Sbjct: 341 PTSNSG 346


>gb|ESK92041.1| zinc knuckle family protein [Moniliophthora roreri MCA 2997]
          Length = 327

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
 Frame = -1

Query: 647 KSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHWHRDCP 468
           + C+ F+++ D      L V  + T    +  SS R      +  CY+C +EGHW   CP
Sbjct: 136 RKCNFFRFVDDP----DLKVPAKRTFSTSNAGSSARGGT---SGACYKCNQEGHWANACP 188

Query: 467 N---------RLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTDAS 315
           N         R   SS S++N  G      +S +C++C ++GHWA  CP   +++ T + 
Sbjct: 189 NAASETSSRSRNFGSSASTQNNAGPSSRGGTSGTCYKCNQEGHWANACPNAETTNQTRSF 248

Query: 314 VGT-----GKKSSGSNKCFKCCKLGHWARECPNL 228
            G+     GK +S  + C KC + GH++ +CPN+
Sbjct: 249 GGSAANLPGKSASSKSICHKCNQSGHFSSKCPNV 282



 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 35/175 (20%)
 Frame = -1

Query: 644 SCDLFKWLCDRAAQHSLT--VIDQETSKELSKNSSTR---QC--------------NERD 522
           SC LF+W+   ++ +S          ++ LS  +S R   QC              NE  
Sbjct: 66  SCQLFEWVNPPSSDNSSPSGARTAAIAQALSAQTSDREPPQCDCGIPAGQRTVTKENENK 125

Query: 521 NSRCYRCGEEGHWHR----DCPN-RLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWAR 357
             + + CG++   +     D P+ ++P+    S +  G      +S +C++C ++GHWA 
Sbjct: 126 GRQFWTCGDDRKCNFFRFVDDPDLKVPAKRTFSTSNAGSSARGGTSGACYKCNQEGHWAN 185

Query: 356 DCPKKLS-----------SSSTDASVGTGKKSSGSNKCFKCCKLGHWARECPNLQ 225
            CP   S           S+ST  + G   +   S  C+KC + GHWA  CPN +
Sbjct: 186 ACPNAASETSSRSRNFGSSASTQNNAGPSSRGGTSGTCYKCNQEGHWANACPNAE 240



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
 Frame = -1

Query: 620 CDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHWHRDCPN-----RLP 456
           C  AA  + +      S   ++N++        +  CY+C +EGHW   CPN     +  
Sbjct: 187 CPNAASETSSRSRNFGSSASTQNNAGPSSRGGTSGTCYKCNQEGHWANACPNAETTNQTR 246

Query: 455 SSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTDA-SVGTGKKSSGSNK 279
           S   S+ N  GK  +++S + C +C + GH++  CP    S  T     G G+ S G  +
Sbjct: 247 SFGGSAANLPGK--SASSKSICHKCNQSGHFSSKCPNVSDSKPTKGRGSGRGRGSRGGGR 304


>ref|XP_003569087.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Brachypodium distachyon]
          Length = 945

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 40/93 (43%), Positives = 58/93 (62%)
 Frame = -1

Query: 512  CYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSS 333
            C++C + GH+ RDCP    S  +S+ N      A+ SSN CF+C + GH++RDCP + SS
Sbjct: 833  CFKCNQPGHFSRDCPGLTTSYGNSAVN------ANASSNLCFKCNQPGHYSRDCPAQGSS 886

Query: 332  SSTDASVGTGKKSSGSNKCFKCCKLGHWARECP 234
              + A       +SG+N CFKC + GH+AR+CP
Sbjct: 887  YPSSAG-----GNSGANLCFKCNQPGHYARDCP 914



 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
 Frame = -1

Query: 563  LSKNSSTRQCNERDNSRCYRCGEEGHWHRDCPNRL-------PSSSDSSENTTGKPPAST 405
            LS    T     R    C  CG  GH  ++CP  +       PS   ++ +       + 
Sbjct: 769  LSARVPTTSRATRYAQTCSVCGSNGHNAQNCPATMDDMHQPAPSVGFTASSYGSSAGGNA 828

Query: 404  SSNSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWARECP 234
            SS  CF+C + GH++RDCP  L++S  +++V     ++ SN CFKC + GH++R+CP
Sbjct: 829  SSGLCFKCNQPGHFSRDCP-GLTTSYGNSAVNA---NASSNLCFKCNQPGHYSRDCP 881



 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = -1

Query: 512  CYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARDCPKKLSS 333
            C++C + GH+ RDCP +  S   S+   +G       +N CF+C + GH+ARDCP + + 
Sbjct: 867  CFKCNQPGHYSRDCPAQGSSYPSSAGGNSG-------ANLCFKCNQPGHYARDCPAQAAG 919

Query: 332  SSTDASVGTGKKSS 291
            +    + G    ++
Sbjct: 920  APQHPAYGNNASAA 933


>gb|EIW71276.1| hypothetical protein TREMEDRAFT_73248 [Tremella mesenterica DSM 1558]
          Length = 1002

 Score = 87.0 bits (214), Expect = 4e-15
 Identities = 43/111 (38%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
 Frame = -1

Query: 512  CYRCGEEGHWHRDCPN--------RLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWAR 357
            C++CG+ GHW   CPN          P+ S +S N  G   +      CF+CG+ GHWA 
Sbjct: 882  CFKCGQSGHWSSACPNDDGPPGRNAGPARSGASSNRNGN--SGGGGGECFKCGQSGHWAS 939

Query: 356  DCPKKLSSS---------STDASVGTGKKSSGSNKCFKCCKLGHWARECPN 231
             CP +   S          T A  G+G KSS + +CF C K GHWA +CPN
Sbjct: 940  ACPNEEGGSITSFPPKRQKTAARGGSGTKSS-AGECFNCGKKGHWASDCPN 989



 Score = 63.2 bits (152), Expect = 7e-08
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 33/181 (18%)
 Frame = -1

Query: 662  PVFKGKSCDLFKWLCDRAAQHSLTVIDQETSKELSKN-------SSTRQCNERDNSRCYR 504
            P  K + C  F+W  D           + T     +N       S  ++CN    +    
Sbjct: 769  PKPKDEQCGYFEWCDDVPVAGPSRPPSRTTGSTKGRNKIAPDRGSGEKKCNCDLEAVIIT 828

Query: 503  CGEEG------HWHRDCPNRLPSSS---DSSENTTGKPPASTSSNS---------CFRCG 378
              +EG       W   CPN   +     +  +  +G  PA   SN          CF+CG
Sbjct: 829  VAKEGPNKGRKFW--TCPNNPKARCGFFEWDDEASGNTPAPFPSNGSGSGGQTGECFKCG 886

Query: 377  EDGHWARDCPKKLSSSSTDA--------SVGTGKKSSGSNKCFKCCKLGHWARECPNLQK 222
            + GHW+  CP        +A        S   G    G  +CFKC + GHWA  CPN + 
Sbjct: 887  QSGHWSSACPNDDGPPGRNAGPARSGASSNRNGNSGGGGGECFKCGQSGHWASACPNEEG 946

Query: 221  G 219
            G
Sbjct: 947  G 947



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
 Frame = -1

Query: 551  SSTRQCNERDNS-RCYRCGEEGHWHRDCPNR----LPSSSDSSENTTGKPPASTSSNS-- 393
            SS R  N       C++CG+ GHW   CPN     + S     + T  +  + T S++  
Sbjct: 914  SSNRNGNSGGGGGECFKCGQSGHWASACPNEEGGSITSFPPKRQKTAARGGSGTKSSAGE 973

Query: 392  CFRCGEDGHWARDCPKKLSSSS 327
            CF CG+ GHWA DCP +    S
Sbjct: 974  CFNCGKKGHWASDCPNEAGQKS 995


>ref|XP_006290832.1| hypothetical protein CARUB_v10016948mg [Capsella rubella]
           gi|482559539|gb|EOA23730.1| hypothetical protein
           CARUB_v10016948mg [Capsella rubella]
          Length = 558

 Score = 86.7 bits (213), Expect = 6e-15
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
 Frame = -1

Query: 539 QCNERDNSR--CYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGH 366
           + NE D+    CY+CG EGH  RDCPN   SSS S       P  +  ++ CFRCGE GH
Sbjct: 291 ESNENDSVSPLCYKCGGEGHLKRDCPN---SSSVSF------PDNNREASECFRCGEKGH 341

Query: 365 WARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWARECPN 231
           +AR+CP         +S+ T      ++ C+ C ++GH+ARECPN
Sbjct: 342 FARECP-------NSSSISTSHGRDSTSLCYSCNRVGHFARECPN 379



 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = -1

Query: 533 NERDNSRCYRCGEEGHWHRDCPNRLPSSSDSSENTTGKPPASTSSNSCFRCGEDGHWARD 354
           N R+ S C+RCGE+GH+ R+CPN   SSS S+ +         S++ C+ C   GH+AR+
Sbjct: 326 NNREASECFRCGEKGHFARECPN---SSSISTSH------GRDSTSLCYSCNRVGHFARE 376

Query: 353 CPKKLSSSSTDASVG-TGKKSSGSNK 279
           CP     S  D     T  KS   NK
Sbjct: 377 CPNSSQVSKRDRDTSTTSHKSRKKNK 402


>ref|XP_003055674.1| RNA binding protein [Micromonas pusilla CCMP1545]
           gi|226463648|gb|EEH60926.1| RNA binding protein
           [Micromonas pusilla CCMP1545]
          Length = 310

 Score = 86.7 bits (213), Expect = 6e-15
 Identities = 44/119 (36%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
 Frame = -1

Query: 524 DNSRCYRCGEEGHWHRDCPNRLP------------SSSDSSENTTG----KPPAST--SS 399
           D  RC +CG  GHW RDCP+R+                D   +  G    +PP     + 
Sbjct: 150 DGDRCNKCGGIGHWARDCPSRIDVGRGGGGGRFRSDHDDRGRDHRGERRERPPRREPGAD 209

Query: 398 NSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKSSGSNKCFKCCKLGHWARECPNLQK 222
           ++C RCG+ GHWARDCP+  +   T A     +     +KC  C +LGHWAR+CPN  K
Sbjct: 210 DTCNRCGKTGHWARDCPEPRNDGKTGA-----RGPGADDKCNICGELGHWARDCPNKDK 263


>ref|XP_006651886.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryza brachyantha]
          Length = 300

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
 Frame = -1

Query: 650 GKSCDLFKWLCDRAAQHSLTVIDQETSKELSKNSSTRQCNERDNSRCYRCGEEGHWHRDC 471
           G SC  F+W CD   +   T     T       SS +  ++R +S C++CG+E HW ++C
Sbjct: 179 GSSCGFFQW-CDEQLR---TAAQSSTQHHTDVASSGQIPSKRSSSACFKCGQENHWAKEC 234

Query: 470 PNRLPSSSDSSENTTGKPPASTSS-NSCFRCGEDGHWARDCPKKLSSSSTDASVGTGKKS 294
           PN+   SSD   +  G+   S SS ++CF+CG+ GHW+RDCP     S T  S      +
Sbjct: 235 PNQ---SSDPYPDKGGRTFTSASSPDACFKCGKAGHWSRDCPTANCGSGTVTSHVKSSST 291

Query: 293 SGS 285
            GS
Sbjct: 292 LGS 294



 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
 Frame = -1

Query: 473 CPNRLPSSSDSSEN------TTGKPPASTSSNSCFRCGEDGHWARDCPKKLSSSSTDASV 312
           C  +L +++ SS        ++G+ P+  SS++CF+CG++ HWA++CP + S    D   
Sbjct: 188 CDEQLRTAAQSSTQHHTDVASSGQIPSKRSSSACFKCGQENHWAKECPNQSSDPYPDKGG 247

Query: 311 GTGKKSSGSNKCFKCCKLGHWARECPNLQKG 219
            T   +S  + CFKC K GHW+R+CP    G
Sbjct: 248 RTFTSASSPDACFKCGKAGHWSRDCPTANCG 278


>ref|XP_004345843.1| uracilDNA glycosylase [Acanthamoeba castellanii str. Neff]
           gi|440800260|gb|ELR21299.1| uracilDNA glycosylase
           [Acanthamoeba castellanii str. Neff]
          Length = 531

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
 Frame = -1

Query: 524 DNSRCYRCGEEGHWHRDCPNRLPSSSDSSE---NTTGKPPASTSSNSCFRCGEDGHWARD 354
           D++ C++C E GHW RDCP+   S            G    ++S   C++C E GHWARD
Sbjct: 418 DSNVCFKCNETGHWARDCPSAGASGGGGGSYGGRGGGGGGGASSGRPCYKCNETGHWARD 477

Query: 353 CPKKLSSSSTDASVGTGKKSSG------------SNKCFKCCKLGHWARECPN 231
           CP            G G    G            S  C+KC ++GHWAR+CP+
Sbjct: 478 CPSAGGGGGGGYGGGGGGYGGGGFGGRGGGGGGSSRPCYKCNEVGHWARDCPS 530



 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
 Frame = -1

Query: 407 TSSNSCFRCGEDGHWARDCPKKLSSSSTDASV-----GTGKKSSGSNKCFKCCKLGHWAR 243
           + SN CF+C E GHWARDCP   +S     S      G G  +S    C+KC + GHWAR
Sbjct: 417 SDSNVCFKCNETGHWARDCPSAGASGGGGGSYGGRGGGGGGGASSGRPCYKCNETGHWAR 476

Query: 242 ECPNLQKG 219
           +CP+   G
Sbjct: 477 DCPSAGGG 484