BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00036729
         (676 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...   199   6e-49
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   187   3e-45
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   187   3e-45
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   186   6e-45
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   184   2e-44
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   184   2e-44
ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citr...   184   3e-44
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   184   3e-44
emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]   181   2e-43
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   180   4e-43
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   179   9e-43
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   178   1e-42
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   177   3e-42
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   176   6e-42
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   176   6e-42
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   176   8e-42
gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3...   174   2e-41
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...   174   2e-41
ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thal...   174   2e-41
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...   174   2e-41

>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  199 bits (506), Expect = 6e-49
 Identities = 112/226 (49%), Positives = 145/226 (64%), Gaps = 4/226 (1%)
 Frame = +3

Query: 6   ISPRQSPLLLDPDGDSV---VCANGANFRSPWRGPGLGLDYPTEELKMVFFEEPIWVSPK 176
           + P   P+ + P  DS+   +  N  NF+ P       L  P E    +F ++P W++  
Sbjct: 57  LKPPPEPVHIPPLRDSIQDNIVENSMNFQIPMSE--FHLITPQESAPRIFIQDPPWIASL 114

Query: 177 YSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLA 353
           +    +  A +  +L+S   ERR YN LRRRQIKAETE WER V EYK LEKVM EKKLA
Sbjct: 115 FLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKDLEKVMREKKLA 174

Query: 354 PSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMMGL 533
           P+LPYV++LFLGWFEPLR+AI R+Q+ Q+TK+ KAA+A HI LLPADKMA+IVMHKMMGL
Sbjct: 175 PNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHKMMGL 234

Query: 534 LMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRRNIG 671
           +M             AAV IG AIEQE +I ++L K+K   ++  G
Sbjct: 235 VM-VGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTG 279


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  187 bits (475), Expect = 3e-45
 Identities = 99/180 (55%), Positives = 128/180 (71%), Gaps = 6/180 (3%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIEFDAARKIKR------LDSLREERRKYNSLRRRQIKAETE 287
           E +  +F ++P W+S    +  D   + +R      L+    ERR Y  LRRRQ+KAETE
Sbjct: 99  ESIPRIFVQDPPWISS--FLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETE 156

Query: 288 VWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYA 467
            WER V+EY+++E+ M EKKLAP+LPYV++LFLGWFEPLR+AI+++QR Q+TK+QKAAYA
Sbjct: 157 AWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYA 216

Query: 468 EHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSK 647
            HI LLPADKMAVIVMHKMMGL+M             AAVQIG AIEQE +I ++L K+K
Sbjct: 217 PHIELLPADKMAVIVMHKMMGLVM-MGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTK 275


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score =  187 bits (474), Expect = 3e-45
 Identities = 98/182 (53%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 302
           E  K +F ++P W++  +    +   +K  +L+ +  E+RKYN LRRRQIKAETE WE+ 
Sbjct: 99  ESSKRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKM 158

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 482
           V+EYK+LE+ M EKKLAP+LPYV+ LFLGWFEPL++AIE +Q+ Q++K+QKAA+A HI L
Sbjct: 159 VEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIEL 218

Query: 483 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 662
           L ADKMAVIVM+KMMGLLM             AAVQIG AIEQE +IQ+ L K++   R 
Sbjct: 219 LSADKMAVIVMYKMMGLLM-MAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRT 277

Query: 663 NI 668
            +
Sbjct: 278 KV 279


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  186 bits (472), Expect = 6e-45
 Identities = 105/220 (47%), Positives = 140/220 (63%), Gaps = 1/220 (0%)
 Frame = +3

Query: 6   ISPRQSPLLLDPDGDSVVCANGANFRSPWRGPGLGLDYPTEELKMVFFEEPIWVSPKY-S 182
           + P   P+   P  DSV      N  +      +    P  E + +F ++P W++  +  
Sbjct: 61  LRPPPDPIQFHPLNDSVQDNLVENLEN-----SIKFQVPISEPR-IFIQDPPWIASLFLK 114

Query: 183 IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLAPSL 362
             F    K  +++S   +RRKYN LRRRQIKAETE WE+ V++YK LE+VM EKKLAPSL
Sbjct: 115 GMFKKVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDLERVMREKKLAPSL 174

Query: 363 PYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMMGLLMX 542
           PYV++LFLGWFEPLR+AI ++Q+ Q+TK+ K A+A HI LLPADKMA+IVMHK+MGL+M 
Sbjct: 175 PYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMALIVMHKLMGLVM- 233

Query: 543 XXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 662
                       AAV IG AIEQE +I ++L KSK   R+
Sbjct: 234 MGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRK 273


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Citrus sinensis]
          Length = 1009

 Score =  184 bits (468), Expect = 2e-44
 Identities = 99/182 (54%), Positives = 128/182 (70%), Gaps = 1/182 (0%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIEFDAARKIKRLDSLRE-ERRKYNSLRRRQIKAETEVWERA 302
           E  + +F ++P W S   SI      K  +L   RE ++RK+N LRRRQ+K ETE WER 
Sbjct: 134 EPRRRIFVQDPPWFS---SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERM 190

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 482
           V EYK+LE  M+EK+LAP+LP+++ LFLGWF PLR+AIER+Q++Q+TK+QKAAYA HI L
Sbjct: 191 VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIEL 250

Query: 483 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 662
           LPADK+AVIVMHKMMGL+M             AAV IG AIEQE +I ++L K+K   R+
Sbjct: 251 LPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 309

Query: 663 NI 668
            I
Sbjct: 310 KI 311


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score =  184 bits (467), Expect = 2e-44
 Identities = 97/182 (53%), Positives = 129/182 (70%), Gaps = 1/182 (0%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 302
           E  K +F ++P W++  +    +   +K  +L+ +  E+RKYN LRRRQIKAETE WE+ 
Sbjct: 99  ESSKRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKM 158

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 482
           V+EYK+LE+ M EKKLAP+LPYV+ LFLGWFEPL++AIE +Q+ Q++K+QKAA+A HI L
Sbjct: 159 VEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIEL 218

Query: 483 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 662
           L ADKMA IVM+KMMGLLM             AAVQIG AIEQE +IQ+ L K++   R 
Sbjct: 219 LSADKMAGIVMYKMMGLLM-MAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRT 277

Query: 663 NI 668
            +
Sbjct: 278 KV 279


>ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
           gi|557556793|gb|ESR66807.1| hypothetical protein
           CICLE_v10007333mg [Citrus clementina]
          Length = 986

 Score =  184 bits (466), Expect = 3e-44
 Identities = 99/182 (54%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIEFDAARKIKRLDSLRE-ERRKYNSLRRRQIKAETEVWERA 302
           E  + +F ++P W S   SI      K  +L   RE ++RK+N LRRRQ+K ETE WER 
Sbjct: 137 EPRRRIFVQDPPWFS---SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERM 193

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 482
           V EYK+LE  M+EK+LAP+LP+++ LFLGWF PL +AIER+Q++Q+TK+QKAAYA HI L
Sbjct: 194 VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIEL 253

Query: 483 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 662
           LPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I ++L K+K   R+
Sbjct: 254 LPADKMAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312

Query: 663 NI 668
            I
Sbjct: 313 KI 314


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
           gi|557556792|gb|ESR66806.1| hypothetical protein
           CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  184 bits (466), Expect = 3e-44
 Identities = 99/182 (54%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIEFDAARKIKRLDSLRE-ERRKYNSLRRRQIKAETEVWERA 302
           E  + +F ++P W S   SI      K  +L   RE ++RK+N LRRRQ+K ETE WER 
Sbjct: 137 EPRRRIFVQDPPWFS---SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERM 193

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 482
           V EYK+LE  M+EK+LAP+LP+++ LFLGWF PL +AIER+Q++Q+TK+QKAAYA HI L
Sbjct: 194 VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIEL 253

Query: 483 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 662
           LPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I ++L K+K   R+
Sbjct: 254 LPADKMAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312

Query: 663 NI 668
            I
Sbjct: 313 KI 314


>emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
          Length = 1312

 Score =  181 bits (459), Expect = 2e-43
 Identities = 99/177 (55%), Positives = 126/177 (71%), Gaps = 6/177 (3%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIEFDAARKIKR------LDSLREERRKYNSLRRRQIKAETE 287
           E +  +F ++P W+S    +  D   + +R      L+    ERR Y  LRRRQ+KAETE
Sbjct: 99  ESIPRIFVQDPPWISS--FLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETE 156

Query: 288 VWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYA 467
            WER V+EY+++E+ M EKKLAP+LPYV++LFLGWFEPLR+AIE++QR Q+TK+QKAAYA
Sbjct: 157 AWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIEKEQRAQRTKKQKAAYA 216

Query: 468 EHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLA 638
            HI LLPADKMAVIVMHKMMGL+M             AAVQIG AIEQE K +A++A
Sbjct: 217 PHIELLPADKMAVIVMHKMMGLVM-MGHEEGCVRVVQAAVQIGMAIEQEAK-EAWVA 271


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
           [Ricinus communis] gi|223532193|gb|EEF33998.1|
           DNA-directed RNA polymerase 3B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 1000

 Score =  180 bits (456), Expect = 4e-43
 Identities = 97/182 (53%), Positives = 124/182 (68%), Gaps = 1/182 (0%)
 Frame = +3

Query: 120 PTEELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWE 296
           P E  + VF ++P W+S  +    +    K  +L+    E+RKYN LRRRQI+ ETE WE
Sbjct: 107 PEESSRRVFIQDPPWISALFFKGLYKIPNKEVKLEFKDIEKRKYNLLRRRQIREETEAWE 166

Query: 297 RAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHI 476
           R V+EYK L K M E+KLAP+LPYV+ LFLGWFEPL++ I+ +Q LQ++K+ KAA+A HI
Sbjct: 167 RMVEEYKALVKEMCERKLAPNLPYVKGLFLGWFEPLKEGIKSEQNLQRSKKNKAAFAPHI 226

Query: 477 GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 656
            LLPADKMAVIVMHKM+GLLM             AAVQIG AIEQE +I  +L K+K   
Sbjct: 227 ELLPADKMAVIVMHKMVGLLM-VGHEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTKNYQ 285

Query: 657 RR 662
           R+
Sbjct: 286 RK 287


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Solanum lycopersicum]
          Length = 1007

 Score =  179 bits (453), Expect = 9e-43
 Identities = 95/194 (48%), Positives = 123/194 (63%), Gaps = 4/194 (2%)
 Frame = +3

Query: 102 GLGLDYPTEELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQ 269
           G  L    E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQ
Sbjct: 118 GYPLVLQKESNKRVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQ 177

Query: 270 IKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKR 449
           IKAETE WE+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIER+Q  + T++
Sbjct: 178 IKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQK 237

Query: 450 QKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQA 629
            + AYA HI  LPADKMAVIVMHK+MGLLM             AAVQIG A+E E +I  
Sbjct: 238 HRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHN 297

Query: 630 YLAKSKRPGRRNIG 671
           ++ K+K+  +   G
Sbjct: 298 FMEKTKKHQKHMTG 311


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
           gi|222854390|gb|EEE91937.1| hypothetical protein
           POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  178 bits (452), Expect = 1e-42
 Identities = 98/180 (54%), Positives = 124/180 (68%), Gaps = 1/180 (0%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKY-SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 302
           E  K VF  +  W+S  Y       A K  +L+    E+RKYN LRRRQI+ ETE WER 
Sbjct: 104 ESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERM 163

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 482
            +EY  L K M E+KLAP+LPYV+SLFLGWFEPL++AIER+Q+L+K+K+QK+A++ +I L
Sbjct: 164 AEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIEL 223

Query: 483 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 662
           LPADKMAVIVMHKMMGL+M             AAVQIG AIEQE +I  +L K+K   R+
Sbjct: 224 LPADKMAVIVMHKMMGLVM-VGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRK 282


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Solanum tuberosum]
          Length = 1015

 Score =  177 bits (449), Expect = 3e-42
 Identities = 93/187 (49%), Positives = 121/187 (64%), Gaps = 4/187 (2%)
 Frame = +3

Query: 102 GLGLDYPTEELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQ 269
           G  L    E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQ
Sbjct: 126 GYPLVLQKESNKRVFIQDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQ 185

Query: 270 IKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKR 449
           IKAETE WE+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T++
Sbjct: 186 IKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQK 245

Query: 450 QKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQA 629
            + AYA HI  LPADKMAVIVMHK+MGLLM             AAVQIG A+E E +I  
Sbjct: 246 HRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHN 305

Query: 630 YLAKSKR 650
           ++ K+K+
Sbjct: 306 FMEKTKK 312


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  176 bits (446), Expect = 6e-42
 Identities = 92/179 (51%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVW 293
           E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQIKAETE W
Sbjct: 95  ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 154

Query: 294 ERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEH 473
           E+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T + +AA+A H
Sbjct: 155 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 214

Query: 474 IGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKR 650
           I  LPADKMAVIVMHK+MGLLM             AAVQIG A+E E +I  +L K+K+
Sbjct: 215 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 273


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score =  176 bits (446), Expect = 6e-42
 Identities = 92/179 (51%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVW 293
           E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQIKAETE W
Sbjct: 96  ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 155

Query: 294 ERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEH 473
           E+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T + +AA+A H
Sbjct: 156 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 215

Query: 474 IGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKR 650
           I  LPADKMAVIVMHK+MGLLM             AAVQIG A+E E +I  +L K+K+
Sbjct: 216 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 274


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 882

 Score =  176 bits (445), Expect = 8e-42
 Identities = 93/180 (51%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKY-SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 302
           E  K VF ++P W+S  +    +  A K  +++    E+RKYN LRRRQI+ ETE WER 
Sbjct: 4   ESSKKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERM 63

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 482
             EY+ L + M E+KLAP+LPYV+ L LGWFEPL++AIE++Q+++K+K+QK+A++ +I L
Sbjct: 64  ADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIEL 123

Query: 483 LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 662
           LPADKMAVIVMHKMMGLLM             AAVQIG AIEQE +I  +L K+K   R+
Sbjct: 124 LPADKMAVIVMHKMMGLLM-VGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRK 182


>gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score =  174 bits (441), Expect = 2e-41
 Identities = 92/182 (50%), Positives = 125/182 (68%), Gaps = 3/182 (1%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 302
           E    +F ++P W+S  +    +    +  +++    E+RKYN LRRRQ+K ETE WE+ 
Sbjct: 99  ESTPRLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKM 158

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQ--KTKRQKAAYAEHI 476
           V+EY++L++ M EKKLAP+LPYV+ LFLGWFEP+R+AI R+Q++Q  K+K+ +AAYA HI
Sbjct: 159 VEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHI 218

Query: 477 GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 656
            LLPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I  +L K+K   
Sbjct: 219 ELLPADKMAVIVMHKMMGLVM-GAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQ 277

Query: 657 RR 662
           R+
Sbjct: 278 RK 279


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  174 bits (441), Expect = 2e-41
 Identities = 92/182 (50%), Positives = 125/182 (68%), Gaps = 3/182 (1%)
 Frame = +3

Query: 126 EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 302
           E    +F ++P W+S  +    +    +  +++    E+RKYN LRRRQ+K ETE WE+ 
Sbjct: 99  ESTPRLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKM 158

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQ--KTKRQKAAYAEHI 476
           V+EY++L++ M EKKLAP+LPYV+ LFLGWFEP+R+AI R+Q++Q  K+K+ +AAYA HI
Sbjct: 159 VEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHI 218

Query: 477 GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 656
            LLPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I  +L K+K   
Sbjct: 219 ELLPADKMAVIVMHKMMGLVM-GAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQ 277

Query: 657 RR 662
           R+
Sbjct: 278 RK 279


>ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
           gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase
           3 [Arabidopsis thaliana]
          Length = 895

 Score =  174 bits (441), Expect = 2e-41
 Identities = 99/186 (53%), Positives = 125/186 (67%), Gaps = 6/186 (3%)
 Frame = +3

Query: 135 KMVFFEEPIWVSPKY----SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 302
           + +F ++P W+S  +    S   D   KI+R D    ++RK++SLRRRQ+K ETE WER 
Sbjct: 121 RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDI---DKRKFDSLRRRQVKEETEAWERM 177

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQK--AAYAEHI 476
           V EY+ LEK M EK LAP+LPYV+ +FLGWF+PL+D IER+Q+LQK K +K  AAYA HI
Sbjct: 178 VDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHI 237

Query: 477 GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 656
            LLPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I  +L   KR  
Sbjct: 238 ELLPADKMAVIVMHKMMGLVM-SGHEDGCIQVVQAAVSIGIAIEQEVRIHNFL---KRTR 293

Query: 657 RRNIGN 674
           + N G+
Sbjct: 294 KNNAGD 299


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
           gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
           Full=DNA-directed RNA polymerase 3, chloroplastic;
           Flags: Precursor gi|2330560|emb|CAA69972.1| chloroplast
           single-subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|2330564|emb|CAA69717.1| chloroplast
           single-subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
           subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|110739160|dbj|BAF01496.1| chloroplast
           single subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
           polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score =  174 bits (441), Expect = 2e-41
 Identities = 99/186 (53%), Positives = 125/186 (67%), Gaps = 6/186 (3%)
 Frame = +3

Query: 135 KMVFFEEPIWVSPKY----SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 302
           + +F ++P W+S  +    S   D   KI+R D    ++RK++SLRRRQ+K ETE WER 
Sbjct: 121 RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDI---DKRKFDSLRRRQVKEETEAWERM 177

Query: 303 VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQK--AAYAEHI 476
           V EY+ LEK M EK LAP+LPYV+ +FLGWF+PL+D IER+Q+LQK K +K  AAYA HI
Sbjct: 178 VDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHI 237

Query: 477 GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 656
            LLPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I  +L   KR  
Sbjct: 238 ELLPADKMAVIVMHKMMGLVM-SGHEDGCIQVVQAAVSIGIAIEQEVRIHNFL---KRTR 293

Query: 657 RRNIGN 674
           + N G+
Sbjct: 294 KNNAGD 299