BLASTX nr result
ID: Zingiber24_contig00036179
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00036179
(611 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe... 295 5e-78
ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A... 293 2e-77
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not... 292 6e-77
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su... 292 6e-77
gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob... 290 2e-76
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi... 289 4e-76
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps... 288 6e-76
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [... 288 1e-75
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta... 286 3e-75
ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutr... 286 4e-75
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su... 285 5e-75
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su... 285 9e-75
gb|AAM65319.1| DNA-directed RNA polymerase II, third largest sub... 285 9e-75
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus... 284 1e-74
ref|XP_004956290.1| PREDICTED: DNA-directed RNA polymerase II su... 284 2e-74
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr... 283 3e-74
ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group] g... 283 3e-74
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ... 283 3e-74
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera] 283 3e-74
ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutr... 283 3e-74
>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
Length = 318
Score = 295 bits (756), Expect = 5e-78
Identities = 151/187 (80%), Positives = 162/187 (86%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQR P+V IREM DDY+KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEINSSVLND
Sbjct: 5 SYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTSD AMSMRFSRDCDACDGDGQCEFCSVEF L +C SDQTLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++ V PV+ SD G ESSEQKGI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LLSSDHTVVPVDF-------SDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHA 177
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 178 KWSPAAT 184
>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
gi|548856809|gb|ERN14637.1| hypothetical protein
AMTR_s00038p00194050 [Amborella trichopoda]
Length = 324
Score = 293 bits (751), Expect = 2e-77
Identities = 147/187 (78%), Positives = 165/187 (88%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFPKV IREM DDYLKFELR+TD S+ANALRR+M+AEVPTIAIDLVEIE NSSVLND
Sbjct: 5 SYQRFPKVKIREMKDDYLKFELRETDPSMANALRRIMLAEVPTIAIDLVEIEANSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EF++HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCE+CSVEF LSV+CDSDQTLDVT+AD
Sbjct: 65 EFLAHRLGLIPLTSEKAMSMRFSRDCDACDGDGQCEYCSVEFQLSVKCDSDQTLDVTSAD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++ V PV+V + D G ++SEQ+GI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LVSSDIHVIPVDV---AGRGMDSNGFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 181
Query: 22 KWSPAAT 2
KWSP AT
Sbjct: 182 KWSPGAT 188
>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 588
Score = 292 bits (747), Expect = 6e-77
Identities = 149/187 (79%), Positives = 161/187 (86%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFPKV IREM DDYLKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSSVLND
Sbjct: 5 SYQRFPKVKIREMKDDYLKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTSD AMSMRFSRDCDACDGDGQCEFCSVEF L +C SDQTLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFLLRAKCISDQTLDVTSKD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L + + V P++ SD G ES +Q+GI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LYTADHTVVPIDF-------SDPAGDESGDQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 178 KWSPAAT 184
>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Fragaria vesca subsp. vesca]
Length = 318
Score = 292 bits (747), Expect = 6e-77
Identities = 149/187 (79%), Positives = 162/187 (86%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFP+V IREM DYLKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEINSSVLND
Sbjct: 5 SYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTSD AMSMRFSRDCDACDGDGQCE+CSVEF L RC SDQTLDVT+ +
Sbjct: 65 EFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDVTSKE 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++ V PV+ SD G E+SEQ+GI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LLSSDHTVVPVDF-------SDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 178 KWSPAAT 184
>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
Length = 318
Score = 290 bits (743), Expect = 2e-76
Identities = 148/187 (79%), Positives = 162/187 (86%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFPKV IRE+ DDY KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSSVLND
Sbjct: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF L +C +DQTLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDVTSKD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++ V PV+ T D G +SSEQ+GI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LYSSDHTVVPVDFT-------DSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 178 KWSPAAT 184
>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata
subsp. lyrata]
Length = 319
Score = 289 bits (740), Expect = 4e-76
Identities = 145/187 (77%), Positives = 164/187 (87%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
+YQRFPK+ IRE+ DDY KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIE+NSSVLND
Sbjct: 5 TYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF LS +C +DQTLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDVTSRD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S +P V PV+ TI S+ S +SSEQKGI+IVKL RGQEL+LRAIARKGIGKDHA
Sbjct: 125 LYSADPTVTPVDFTIDSSAS------DSSEQKGIIIVKLRRGQELKLRAIARKGIGKDHA 178
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 179 KWSPAAT 185
>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
gi|482566867|gb|EOA31056.1| hypothetical protein
CARUB_v10014208mg [Capsella rubella]
Length = 319
Score = 288 bits (738), Expect = 6e-76
Identities = 146/187 (78%), Positives = 163/187 (87%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
+YQRFPKV IRE+ DDY KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIE+NSSVLND
Sbjct: 5 TYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF LS +C +DQTLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S +P V PV+ TI S+ S +SSE KGI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LYSADPTVTPVDFTIDSSAS------DSSEHKGIIIVKLRRGQELRLRAIARKGIGKDHA 178
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 179 KWSPAAT 185
>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana] gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
3; AltName: Full=DNA-directed RNA polymerase II 36 kDa
polypeptide A; AltName: Full=DNA-directed RNA polymerase
II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
Short=RNA polymerase II subunit B3-A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest
subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
putative DNA-directed RNA polymerase II third largest
subunit [Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
II subunit RPB3-A [Arabidopsis thaliana]
Length = 319
Score = 288 bits (736), Expect = 1e-75
Identities = 144/187 (77%), Positives = 164/187 (87%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
+YQRFPK+ IRE+ DDY KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIE+NSSVLND
Sbjct: 5 TYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF LS +C +DQTLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S +P V PV+ TI S++S +SSE KGI+IVKL RGQEL+LRAIARKGIGKDHA
Sbjct: 125 LYSADPTVTPVDFTIDSSVS------DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHA 178
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 179 KWSPAAT 185
>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 318
Score = 286 bits (732), Expect = 3e-75
Identities = 143/187 (76%), Positives = 162/187 (86%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFP++ IRE+ DDY KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLND
Sbjct: 5 SYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQC++CSVEF L +C +DQTLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++ V PV+ SD G +SSEQ+GI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LYSSDHTVVPVDF-------SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 178 KWSPAAT 184
>ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutrema salsugineum]
gi|557110719|gb|ESQ51010.1| hypothetical protein
EUTSA_v10022739mg [Eutrema salsugineum]
Length = 369
Score = 286 bits (731), Expect = 4e-75
Identities = 142/187 (75%), Positives = 162/187 (86%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFPKV IRE+ DDY KFELR+TD S+ANALRRVMI+EVPT+AIDLVEI+INSSVLND
Sbjct: 55 SYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIDINSSVLND 114
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMR SRDCD+CDGDGQCEFCSVEF L +C +DQTLDVT+ D
Sbjct: 115 EFIAHRLGLIPLTSERAMSMRLSRDCDSCDGDGQCEFCSVEFRLQAKCVTDQTLDVTSRD 174
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L ST+P V PV+ T+ D G +SSEQ+GI+IVKL RGQEL+LRAIARKGIGKDHA
Sbjct: 175 LYSTDPTVTPVDFTL------DSSGTDSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHA 228
Query: 22 KWSPAAT 2
KWSPA+T
Sbjct: 229 KWSPAST 235
>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 285 bits (730), Expect = 5e-75
Identities = 145/188 (77%), Positives = 163/188 (86%)
Frame = -2
Query: 565 TSYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLN 386
+SYQRFPKV IRE+ DDY KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSSVLN
Sbjct: 4 SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
Query: 385 DEFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTA 206
DEFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF L +C SDQTLDVT+
Sbjct: 64 DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
Query: 205 DLQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDH 26
DL S++ V PV+ + ++A + E+ + KGI+IVKL RGQELRLRAIARKGIGKDH
Sbjct: 124 DLYSSDHTVVPVDFSDSAAATG-----EALDTKGIIIVKLRRGQELRLRAIARKGIGKDH 178
Query: 25 AKWSPAAT 2
AKWSPAAT
Sbjct: 179 AKWSPAAT 186
>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Solanum lycopersicum]
Length = 319
Score = 285 bits (728), Expect = 9e-75
Identities = 142/187 (75%), Positives = 164/187 (87%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFPK+ +RE+ DD++KFELRDTDASIANALRR+MIAEVPTIAIDLVEIE+NSSVLND
Sbjct: 5 SYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFISHRLGL+PLTS+ AMSMRFSRDCDACDGDGQCE+CSVEF+L V+C SDQTLDVT+ D
Sbjct: 65 EFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDVTSKD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++ V PV+ + AS+ +++ KGI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LLSSDHTVVPVDYSDASS------SFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHA 178
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 179 KWSPAAT 185
>gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 285 bits (728), Expect = 9e-75
Identities = 143/187 (76%), Positives = 163/187 (87%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
+YQRFPK+ IRE+ DDY KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIE+NSSVLND
Sbjct: 5 TYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLI LTS+ AMSMRFSRDCDACDGDGQCEFCSVEF LS +C +DQTLDVT+ D
Sbjct: 65 EFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S +P V PV+ TI S++S +SSE KGI+IVKL RGQEL+LRAIARKGIGKDHA
Sbjct: 125 LYSADPTVTPVDFTIDSSVS------DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHA 178
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 179 KWSPAAT 185
>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
Length = 318
Score = 284 bits (727), Expect = 1e-74
Identities = 144/187 (77%), Positives = 160/187 (85%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SY R P+V IRE+ DDY KFELRDTDASIANALRRVMIAEVPTIAIDLVEIE+NSSVLND
Sbjct: 5 SYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF L V+C +DQTLDV++ D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVSSKD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++P V PV+ SD +SSE +G++IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LYSSDPSVVPVDF-------SDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHA 177
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 178 KWSPAAT 184
>ref|XP_004956290.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Setaria italica]
Length = 325
Score = 284 bits (726), Expect = 2e-74
Identities = 143/189 (75%), Positives = 162/189 (85%), Gaps = 1/189 (0%)
Frame = -2
Query: 565 TSYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLN 386
+SYQRFP+V IRE+ DDY KFELRDTDASIANALRRVMIAEVPT+AIDLVEIE+NSSVLN
Sbjct: 8 SSYQRFPRVRIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLN 67
Query: 385 DEFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTLDVTT 209
DEFI+HRLGLIPLTS AM MRFSRDCDACDGDG CE+CSVEF LS R DSDQTL+VT+
Sbjct: 68 DEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFNLSARATDSDQTLEVTS 127
Query: 208 ADLQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKD 29
DL+S +P+VCPV+ A ++ + + ++GILIVKL RGQELRLRAIARKGIGKD
Sbjct: 128 NDLRSADPKVCPVDQARAYQLALSGNDYDPNAERGILIVKLRRGQELRLRAIARKGIGKD 187
Query: 28 HAKWSPAAT 2
HAKWSPAAT
Sbjct: 188 HAKWSPAAT 196
>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 3-like [Citrus
sinensis] gi|557524889|gb|ESR36195.1| hypothetical
protein CICLE_v10028849mg [Citrus clementina]
Length = 319
Score = 283 bits (724), Expect = 3e-74
Identities = 144/187 (77%), Positives = 159/187 (85%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFPKV IRE+ DDY KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSSVLND
Sbjct: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF L +C SDQTLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++ V PV+ + S + +Q+GI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LYSSDHSVVPVDFVDPAGYDS------TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 179 KWSPAAT 185
>ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA
polymerase II [Oryza sativa Japonica Group]
gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa
Japonica Group] gi|215692481|dbj|BAG87901.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|215697124|dbj|BAG91118.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215768432|dbj|BAH00661.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218201657|gb|EEC84084.1| hypothetical protein
OsI_30378 [Oryza sativa Indica Group]
gi|222641056|gb|EEE69188.1| hypothetical protein
OsJ_28369 [Oryza sativa Japonica Group]
Length = 330
Score = 283 bits (724), Expect = 3e-74
Identities = 149/203 (73%), Positives = 170/203 (83%), Gaps = 7/203 (3%)
Frame = -2
Query: 589 EKMGGGLRTSYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEI 410
E+ GG+ SYQRFP+V IRE+ DDY KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEI
Sbjct: 2 ERAAGGV--SYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEI 59
Query: 409 EINSSVLNDEFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DS 233
E+NSSVLNDEFI+HRLGLIPLTS AM+MRFSRDCDACDGDG CE+CSVEF L+ R DS
Sbjct: 60 EVNSSVLNDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDS 119
Query: 232 DQTLDVTTADLQSTNPRVCPVNVTIASAMSSDREGCE------SSEQKGILIVKLHRGQE 71
DQTL+VT+ DL+ST+P+VCPV+ A A G E +++Q+GILIVKL RGQE
Sbjct: 120 DQTLEVTSNDLRSTDPKVCPVDQ--ARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQE 177
Query: 70 LRLRAIARKGIGKDHAKWSPAAT 2
LRLRAIARKGIGKDHAKWSPAAT
Sbjct: 178 LRLRAIARKGIGKDHAKWSPAAT 200
>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
[Glycine max]
Length = 319
Score = 283 bits (724), Expect = 3e-74
Identities = 146/194 (75%), Positives = 163/194 (84%)
Frame = -2
Query: 583 MGGGLRTSYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEI 404
M GG+ SY R P+V IRE+ DDY KFELRDTDASIANALRRVMIAEVPT+AIDLVEIE+
Sbjct: 1 MEGGV--SYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEV 58
Query: 403 NSSVLNDEFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQT 224
NSSVLNDEFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF L V+C +DQT
Sbjct: 59 NSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQT 118
Query: 223 LDVTTADLQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARK 44
LDVT+ DL S++P V PV+ + SA SD +GI+IVKL RGQEL+LRAIARK
Sbjct: 119 LDVTSKDLYSSDPTVSPVDFSDPSATDSD-------NNRGIIIVKLRRGQELKLRAIARK 171
Query: 43 GIGKDHAKWSPAAT 2
GIGKDHAKWSPAAT
Sbjct: 172 GIGKDHAKWSPAAT 185
>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 283 bits (724), Expect = 3e-74
Identities = 142/187 (75%), Positives = 162/187 (86%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFPK+ IRE+ DDY KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLND
Sbjct: 5 SYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF L +C +D+TLDVT+ D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKD 124
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S++ V PV+ SD G +S+++KGI+IVKL RGQELRLRAIARKGIGKDHA
Sbjct: 125 LISSDHTVVPVDF-------SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 178 KWSPAAT 184
>ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutrema salsugineum]
gi|557089698|gb|ESQ30406.1| hypothetical protein
EUTSA_v10011661mg [Eutrema salsugineum]
Length = 320
Score = 283 bits (723), Expect = 3e-74
Identities = 142/187 (75%), Positives = 160/187 (85%)
Frame = -2
Query: 562 SYQRFPKVHIREMTDDYLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEINSSVLND 383
SYQRFPKV IRE+ DDY KFELR+TD S+ANALRRVMI+EVPT+AIDLVEI INSSVLND
Sbjct: 6 SYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIMINSSVLND 65
Query: 382 EFISHRLGLIPLTSDDAMSMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTLDVTTAD 203
EFI+HRLGLIPLTS+ AMSMRFSRDCDACDGDGQCEFCSVEF L +C +DQTLDVT+ D
Sbjct: 66 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFQLGAKCVTDQTLDVTSRD 125
Query: 202 LQSTNPRVCPVNVTIASAMSSDREGCESSEQKGILIVKLHRGQELRLRAIARKGIGKDHA 23
L S +P V PV+ ++D +SSEQ+GI+IVKL RGQEL+LRAIARKGIGKDHA
Sbjct: 126 LYSADPTVTPVD------FATDPSATDSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHA 179
Query: 22 KWSPAAT 2
KWSPAAT
Sbjct: 180 KWSPAAT 186