BLASTX nr result
ID: Zingiber24_contig00036095
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00036095
(279 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Sela... 91 2e-16
ref|XP_001751839.1| predicted protein [Physcomitrella patens] gi... 85 1e-14
ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III s... 80 3e-13
gb|EMS65056.1| hypothetical protein TRIUR3_25018 [Triticum urartu] 80 4e-13
dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare] 79 5e-13
gb|EMT04694.1| DNA-directed RNA polymerase III subunit RPC8 [Aeg... 78 1e-12
tpg|DAA62512.1| TPA: DNA-directed RNA polymerase III subunit pol... 78 1e-12
gb|ACR34942.1| unknown [Zea mays] 78 1e-12
ref|NP_001147612.1| DNA-directed RNA polymerase III subunit 22.9... 78 1e-12
gb|EMS46002.1| DNA-directed RNA polymerase III subunit RPC8 [Tri... 77 2e-12
ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group] g... 77 2e-12
gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japo... 77 2e-12
ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III s... 77 2e-12
ref|XP_002460684.1| hypothetical protein SORBIDRAFT_02g033110 [S... 77 2e-12
ref|XP_006657688.1| PREDICTED: DNA-directed RNA polymerase III s... 77 3e-12
gb|EMT18324.1| DNA-directed RNA polymerase III subunit RPC8 [Aeg... 76 5e-12
ref|XP_004957678.1| PREDICTED: DNA-directed RNA polymerase III s... 75 1e-11
ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Sela... 71 1e-10
ref|XP_004242644.1| PREDICTED: DNA-directed RNA polymerase III s... 71 2e-10
ref|XP_006343568.1| PREDICTED: DNA-directed RNA polymerase III s... 70 2e-10
>ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein
SELMODRAFT_128885 [Selaginella moellendorffii]
Length = 187
Score = 90.5 bits (223), Expect = 2e-16
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = -1
Query: 270 IWVWKHEFGDLAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLIS 91
+WVW ++ ++ MDL+EEV RV K+ YP PLEQ+ +AQPFAPM++IG+I DGLGL+S
Sbjct: 126 LWVWNYQENEMFMDLEEEVRFRVLKVRYPPIPLEQERDAQPFAPMEVIGDINSDGLGLVS 185
Query: 90 WW 85
WW
Sbjct: 186 WW 187
>ref|XP_001751839.1| predicted protein [Physcomitrella patens]
gi|162696937|gb|EDQ83274.1| predicted protein
[Physcomitrella patens]
Length = 189
Score = 84.7 bits (208), Expect = 1e-14
Identities = 32/66 (48%), Positives = 49/66 (74%)
Frame = -1
Query: 279 EDGIWVWKHEFGDLAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
E+ +W+W + D+ MDL+E+V RV ++ YP P+EQ+ +A+PFAPM I G+I DGLG
Sbjct: 124 EEKLWIWNYNGADMFMDLEEDVRFRVVQVKYPPIPIEQEKDARPFAPMAITGDINADGLG 183
Query: 99 LISWWA 82
L++WW+
Sbjct: 184 LVAWWS 189
>ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Frame = -1
Query: 279 EDGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGL 103
EDG W+ K + GD L +D+D+E+ V+ I YP P+EQ + +PFAPMQIIG I GDGL
Sbjct: 122 EDGRWMLKTDDGDELYLDIDDEIRFLVSGIKYPPIPVEQKEDDKPFAPMQIIGSIKGDGL 181
Query: 102 GLISWWA 82
GL++WWA
Sbjct: 182 GLLAWWA 188
>gb|EMS65056.1| hypothetical protein TRIUR3_25018 [Triticum urartu]
Length = 177
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = -1
Query: 279 EDGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGL 103
EDG W K E GD L +D+D+E+ V+ I YP P+EQ + +PFAPMQI G I GDGL
Sbjct: 89 EDGRWALKTEDGDELHLDIDDEIRFLVSSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGL 148
Query: 102 GLISWWA 82
GLI+WWA
Sbjct: 149 GLIAWWA 155
>dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 79.3 bits (194), Expect = 5e-13
Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = -1
Query: 279 EDGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGL 103
EDG W K E GD L +D+D+E+ V+ I YP P+EQ + +PFAPMQI G I GDGL
Sbjct: 122 EDGRWALKTEDGDELPLDIDDEIRFLVSSIKYPPIPVEQKEDDRPFAPMQINGSIKGDGL 181
Query: 102 GLISWWA 82
GL++WWA
Sbjct: 182 GLLAWWA 188
>gb|EMT04694.1| DNA-directed RNA polymerase III subunit RPC8 [Aegilops tauschii]
Length = 271
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -1
Query: 279 EDGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGL 103
EDG W K E GD L +D D+E+ V+ I YP P+EQ + +PFAPMQI G I GDGL
Sbjct: 185 EDGRWALKTEDGDELHLDTDDEIRFLVSSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGL 244
Query: 102 GLISWWA 82
GL++WWA
Sbjct: 245 GLLAWWA 251
>tpg|DAA62512.1| TPA: DNA-directed RNA polymerase III subunit polypeptide [Zea mays]
Length = 290
Score = 77.8 bits (190), Expect = 1e-12
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = -1
Query: 276 DGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
DG W+ K E GD L +DLD+E+ V+ YP P++Q+ + PFAPMQI+G I GDGLG
Sbjct: 211 DGRWMLKTELGDELYLDLDDEIRFLVSSTKYPPIPIDQNEDDPPFAPMQIVGSIKGDGLG 270
Query: 99 LISWWA 82
L+ WWA
Sbjct: 271 LLVWWA 276
>gb|ACR34942.1| unknown [Zea mays]
Length = 202
Score = 77.8 bits (190), Expect = 1e-12
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = -1
Query: 276 DGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
DG W+ K E GD L +DLD+E+ V+ YP P++Q+ + PFAPMQI+G I GDGLG
Sbjct: 123 DGRWMLKTELGDELYLDLDDEIRFLVSSTKYPPIPIDQNEDDPPFAPMQIVGSIKGDGLG 182
Query: 99 LISWWA 82
L+ WWA
Sbjct: 183 LLVWWA 188
>ref|NP_001147612.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays] gi|195612502|gb|ACG28081.1| DNA-directed RNA
polymerase III subunit 22.9 kDa polypeptide [Zea mays]
Length = 202
Score = 77.8 bits (190), Expect = 1e-12
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = -1
Query: 276 DGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
DG W+ K E GD L +DLD+E+ V+ YP P++Q+ + PFAPMQI+G I GDGLG
Sbjct: 123 DGRWMLKTELGDELYLDLDDEIRFLVSSTKYPPIPIDQNEDDPPFAPMQIVGSIKGDGLG 182
Query: 99 LISWWA 82
L+ WWA
Sbjct: 183 LLVWWA 188
>gb|EMS46002.1| DNA-directed RNA polymerase III subunit RPC8 [Triticum urartu]
Length = 200
Score = 77.4 bits (189), Expect = 2e-12
Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -1
Query: 279 EDGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGL 103
EDG W K E GD L +D+D+E+ + I YP P+EQ + +PFAPMQI G I GDGL
Sbjct: 110 EDGRWALKTEDGDELHLDIDDEIRFLASSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGL 169
Query: 102 GLISWWA 82
GL++WWA
Sbjct: 170 GLLAWWA 176
>ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|29837202|dbj|BAC75582.1| putative DNA-directed RNA
polymerase III subunit 22.9 kDa polypeptide [Oryza
sativa Japonica Group] gi|113611164|dbj|BAF21542.1|
Os07g0477000 [Oryza sativa Japonica Group]
gi|215765537|dbj|BAG87234.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218199590|gb|EEC82017.1| hypothetical protein
OsI_25976 [Oryza sativa Indica Group]
Length = 202
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = -1
Query: 276 DGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
DG W+ K E GD L +DLD+E+ V+ I YP P+EQ + FAPMQIIG I GDGLG
Sbjct: 123 DGRWMLKTEDGDELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIKGDGLG 182
Query: 99 LISWWA 82
L++WWA
Sbjct: 183 LLAWWA 188
>gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japonica Group]
Length = 365
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = -1
Query: 276 DGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
DG W+ K E GD L +DLD+E+ V+ I YP P+EQ + FAPMQIIG I GDGLG
Sbjct: 286 DGRWMLKTEDGDELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIKGDGLG 345
Query: 99 LISWWA 82
L++WWA
Sbjct: 346 LLAWWA 351
>ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -1
Query: 279 EDGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGL 103
EDG W+ K E D L +DLD+E+ V I YP P+EQ + +PFAPMQI G I GDGL
Sbjct: 122 EDGRWMLKTEDDDELYLDLDDEIRFLVASIKYPPIPVEQKEDDKPFAPMQINGSIKGDGL 181
Query: 102 GLISWWA 82
GL++WWA
Sbjct: 182 GLLAWWA 188
>ref|XP_002460684.1| hypothetical protein SORBIDRAFT_02g033110 [Sorghum bicolor]
gi|241924061|gb|EER97205.1| hypothetical protein
SORBIDRAFT_02g033110 [Sorghum bicolor]
Length = 202
Score = 77.0 bits (188), Expect = 2e-12
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = -1
Query: 276 DGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
DG W+ K E GD L +DLD+E+ V+ YP P++Q + PFAPMQI+G I GDGLG
Sbjct: 123 DGRWMLKTEDGDELYLDLDDEIRFLVSSTKYPRIPIDQKEDDPPFAPMQIVGSIKGDGLG 182
Query: 99 LISWWA 82
L++WWA
Sbjct: 183 LLAWWA 188
>ref|XP_006657688.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Oryza
brachyantha]
Length = 200
Score = 76.6 bits (187), Expect = 3e-12
Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = -1
Query: 276 DGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
DG W+ K E GD L +D D+E+ V+ I YP P+EQ PFAPMQIIG I GDGLG
Sbjct: 123 DGRWMLKTEDGDELYLDTDDEIRFLVSSIKYPPIPVEQKETDSPFAPMQIIGSIKGDGLG 182
Query: 99 LISWW 85
L++WW
Sbjct: 183 LLAWW 187
>gb|EMT18324.1| DNA-directed RNA polymerase III subunit RPC8 [Aegilops tauschii]
Length = 223
Score = 75.9 bits (185), Expect = 5e-12
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = -1
Query: 279 EDGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGL 103
EDG W K E GD L +D+D+E+ + I YP P+EQ + +PFAPMQI G I GDGL
Sbjct: 111 EDGRWALKTEDGDELHLDIDDEIRFLASSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGL 170
Query: 102 GLISWW 85
GL++WW
Sbjct: 171 GLLAWW 176
>ref|XP_004957678.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc8-like
isoform X2 [Setaria italica]
Length = 200
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = -1
Query: 276 DGIWVWKHEFGD-LAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLG 100
DG W+ + E D L +DLD+E+ V+ YP P+EQ A+ PF+PMQI+G I GDGLG
Sbjct: 123 DGRWMLRTEDNDELYLDLDDEIRFLVSGTKYPPIPIEQKADDPPFSPMQIVGSIKGDGLG 182
Query: 99 LISWWA 82
L++WWA
Sbjct: 183 LLAWWA 188
>ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Selaginella moellendorffii]
gi|300145389|gb|EFJ12066.1| hypothetical protein
SELMODRAFT_235152 [Selaginella moellendorffii]
Length = 155
Score = 71.2 bits (173), Expect = 1e-10
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = -1
Query: 225 DEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWW 85
++EV RV K+ YP PLEQ+ +AQPFAPM++IG+I DGLGL+SWW
Sbjct: 109 NQEVRFRVLKVRYPPIPLEQERDAQPFAPMEVIGDINSDGLGLVSWW 155
>ref|XP_004242644.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Solanum lycopersicum]
Length = 193
Score = 70.9 bits (172), Expect = 2e-10
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = -1
Query: 267 WVWKHEFGDLAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISW 88
W+WK + D +D +E+ +V ++YPS PLEQD +++PFAPM I G + DGLG ISW
Sbjct: 132 WIWKFDELDYPIDGIDEIRFQVHNVSYPSMPLEQDKDSKPFAPMVIKGSLDADGLGPISW 191
Query: 87 W 85
W
Sbjct: 192 W 192
>ref|XP_006343568.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Solanum tuberosum]
Length = 193
Score = 70.5 bits (171), Expect = 2e-10
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = -1
Query: 267 WVWKHEFGDLAMDLDEEVNVRVTKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISW 88
W+WK + D +D +E+ +V ++YPS PLEQD ++ PFAPM I G + DGLG ISW
Sbjct: 132 WIWKFDELDYPIDGVDEIRFQVHNVSYPSMPLEQDKDSNPFAPMVIKGSLDADGLGPISW 191
Query: 87 W 85
W
Sbjct: 192 W 192