BLASTX nr result
ID: Zingiber24_contig00035460
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00035460
(307 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI36057.3| unnamed protein product [Vitis vinifera] 142 5e-32
ref|XP_002304219.1| hypothetical protein POPTR_0003s04710g [Popu... 133 2e-29
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19... 133 3e-29
ref|XP_006343144.1| PREDICTED: MMS19 nucleotide excision repair ... 132 5e-29
ref|XP_004236399.1| PREDICTED: MMS19 nucleotide excision repair ... 131 8e-29
gb|EOY26936.1| MMS19 nucleotide excision repair protein, putativ... 127 2e-27
gb|EOY26935.1| MMS19 nucleotide excision repair protein, putativ... 127 2e-27
gb|EOY26934.1| MMS19 nucleotide excision repair protein, putativ... 127 2e-27
gb|EOY26932.1| MMS19 nucleotide excision repair protein, putativ... 127 2e-27
ref|XP_004486785.1| PREDICTED: uncharacterized protein LOC101495... 124 1e-26
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik... 124 2e-26
ref|XP_006595124.1| PREDICTED: DNA repair/transcription protein ... 123 3e-26
ref|XP_004302857.1| PREDICTED: uncharacterized protein LOC101304... 122 4e-26
ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair ... 122 6e-26
ref|XP_006597169.1| PREDICTED: MMS19 nucleotide excision repair ... 121 1e-25
ref|XP_006597168.1| PREDICTED: MMS19 nucleotide excision repair ... 121 1e-25
ref|XP_006597167.1| PREDICTED: MMS19 nucleotide excision repair ... 121 1e-25
ref|XP_003546956.1| PREDICTED: MMS19 nucleotide excision repair ... 121 1e-25
ref|XP_006595125.1| PREDICTED: DNA repair/transcription protein ... 120 2e-25
gb|ESW22599.1| hypothetical protein PHAVU_005G166100g [Phaseolus... 119 3e-25
>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
Length = 1146
Score = 142 bits (358), Expect = 5e-32
Identities = 67/101 (66%), Positives = 80/101 (79%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R G V ++DAR +A+++L NVQVQSL DRKLC E+L+CLLD Y ++V LGDDLV
Sbjct: 115 RKSNMGRVTDNDARAVAQAYLENVQVQSLGQHDRKLCFEILECLLDHYPESVASLGDDLV 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
YGIC AID EKDPRCLML FH+VEIL L+PDPSGP+ASFA
Sbjct: 175 YGICGAIDGEKDPRCLMLTFHIVEILARLFPDPSGPLASFA 215
>ref|XP_002304219.1| hypothetical protein POPTR_0003s04710g [Populus trichocarpa]
gi|222841651|gb|EEE79198.1| hypothetical protein
POPTR_0003s04710g [Populus trichocarpa]
Length = 337
Score = 133 bits (335), Expect = 2e-29
Identities = 62/101 (61%), Positives = 80/101 (79%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
+ K GMV +SDA+ +A+SFL N+QVQSL DRKLC E+++CLL+ Y AV LGDDL+
Sbjct: 205 KRKSGGMVTSSDAKGVAESFLQNLQVQSLGQHDRKLCFELMECLLEYYPHAVASLGDDLI 264
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
YGICEAID EKDP+CLML FH++E+L ++PDP GP+ SFA
Sbjct: 265 YGICEAIDGEKDPQCLMLAFHIMEVLVQVFPDPCGPIESFA 305
>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
communis] gi|223544868|gb|EEF46383.1| DNA
repair/transcription protein met18/mms19, putative
[Ricinus communis]
Length = 1174
Score = 133 bits (334), Expect = 3e-29
Identities = 62/101 (61%), Positives = 80/101 (79%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R + G++ DA+ +A+S+L N+QVQSLA DRKLC E+L+CLL+ AV LG+DL+
Sbjct: 114 RRRSNGIITGIDAKVVAESYLQNLQVQSLAQYDRKLCFELLECLLENCPAAVASLGEDLI 173
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
YGICEAID EKDP+CLML FH+VE+LG L+PDPSGP +SFA
Sbjct: 174 YGICEAIDGEKDPQCLMLTFHIVEVLGKLFPDPSGPFSSFA 214
>ref|XP_006343144.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
[Solanum tuberosum]
Length = 1170
Score = 132 bits (332), Expect = 5e-29
Identities = 60/96 (62%), Positives = 79/96 (82%)
Frame = -1
Query: 292 GMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLVYGICE 113
GM++ S A+ +A+S+L +QVQSL +DRKLCL++L+CLLD Y DA+ LGDDLVYGICE
Sbjct: 122 GMINRSQAKAVAESYLKTLQVQSLGQQDRKLCLQILECLLDRYRDALFSLGDDLVYGICE 181
Query: 112 AIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
AID EKDP+CLML FH+VE+L L+P+ SGP+ +FA
Sbjct: 182 AIDGEKDPQCLMLIFHIVELLAQLFPEASGPLENFA 217
>ref|XP_004236399.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
[Solanum lycopersicum]
Length = 1153
Score = 131 bits (330), Expect = 8e-29
Identities = 60/96 (62%), Positives = 77/96 (80%)
Frame = -1
Query: 292 GMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLVYGICE 113
GM+ S A+ +A+S+L +QVQSL DRKLCL++L+CLLD Y DA+ LGDDLVYGICE
Sbjct: 135 GMISRSQAKAVAESYLKTLQVQSLGQHDRKLCLQILECLLDRYRDALFSLGDDLVYGICE 194
Query: 112 AIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
AID EKDP+CLML FH+VE+L L+P+ SGP+ +FA
Sbjct: 195 AIDGEKDPQCLMLIFHIVELLAQLFPEASGPLENFA 230
>gb|EOY26936.1| MMS19 nucleotide excision repair protein, putative isoform 5
[Theobroma cacao]
Length = 1157
Score = 127 bits (319), Expect = 2e-27
Identities = 59/101 (58%), Positives = 75/101 (74%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R G+V +DA+ +A+S+L N+QVQSL DRKLC E+L CLL+ Y A+ LGD+L+
Sbjct: 115 RKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLERYPKAIASLGDNLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
YGICEA+D EKDP CLML FH++EIL L+PDP GP SFA
Sbjct: 175 YGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFA 215
>gb|EOY26935.1| MMS19 nucleotide excision repair protein, putative isoform 4
[Theobroma cacao]
Length = 1136
Score = 127 bits (319), Expect = 2e-27
Identities = 59/101 (58%), Positives = 75/101 (74%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R G+V +DA+ +A+S+L N+QVQSL DRKLC E+L CLL+ Y A+ LGD+L+
Sbjct: 115 RKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLERYPKAIASLGDNLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
YGICEA+D EKDP CLML FH++EIL L+PDP GP SFA
Sbjct: 175 YGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFA 215
>gb|EOY26934.1| MMS19 nucleotide excision repair protein, putative isoform 3
[Theobroma cacao]
Length = 1062
Score = 127 bits (319), Expect = 2e-27
Identities = 59/101 (58%), Positives = 75/101 (74%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R G+V +DA+ +A+S+L N+QVQSL DRKLC E+L CLL+ Y A+ LGD+L+
Sbjct: 115 RKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLERYPKAIASLGDNLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
YGICEA+D EKDP CLML FH++EIL L+PDP GP SFA
Sbjct: 175 YGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFA 215
>gb|EOY26932.1| MMS19 nucleotide excision repair protein, putative isoform 1
[Theobroma cacao] gi|508779677|gb|EOY26933.1| MMS19
nucleotide excision repair protein, putative isoform 1
[Theobroma cacao]
Length = 1149
Score = 127 bits (319), Expect = 2e-27
Identities = 59/101 (58%), Positives = 75/101 (74%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R G+V +DA+ +A+S+L N+QVQSL DRKLC E+L CLL+ Y A+ LGD+L+
Sbjct: 115 RKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLERYPKAIASLGDNLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
YGICEA+D EKDP CLML FH++EIL L+PDP GP SFA
Sbjct: 175 YGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFA 215
>ref|XP_004486785.1| PREDICTED: uncharacterized protein LOC101495813 [Cicer arietinum]
Length = 1138
Score = 124 bits (312), Expect = 1e-26
Identities = 62/96 (64%), Positives = 73/96 (76%)
Frame = -1
Query: 292 GMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLVYGICE 113
GMV SDA+ +A+SFL +QVQSL DRKLC E+L LL+ + DAV L +DL+YGICE
Sbjct: 120 GMVTGSDAKAIAQSFLQYLQVQSLGHYDRKLCFELLDFLLEHHADAVASLEEDLIYGICE 179
Query: 112 AIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFA 5
AID EKDP CLML FH+VE L LYPDPSG +ASFA
Sbjct: 180 AIDAEKDPECLMLAFHIVESLARLYPDPSGLLASFA 215
>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
excision repair protein-like protein [Medicago
truncatula]
Length = 1140
Score = 124 bits (310), Expect = 2e-26
Identities = 59/102 (57%), Positives = 77/102 (75%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R GMV SDA+++ +SFL ++QVQSL + DRKLC E+L LL+ + D++ L +DL+
Sbjct: 115 RKSVVGMVTGSDAKSITQSFLQHLQVQSLGLYDRKLCFELLDYLLEHHVDSIASLEEDLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFAQ 2
+GICEAID EKDP CLML FH+VE L LYPDPSG +ASFA+
Sbjct: 175 FGICEAIDAEKDPECLMLAFHIVESLARLYPDPSGLLASFAR 216
>ref|XP_006595124.1| PREDICTED: DNA repair/transcription protein mms19-like isoform X1
[Glycine max]
Length = 1132
Score = 123 bits (308), Expect = 3e-26
Identities = 64/103 (62%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVR-DRKLCLEVLQCLLDAYTDAVVVLGDDL 131
R GMV +SDA T+A+SFL +QVQSL DRKLC E+L CLL+ Y DAV LG+DL
Sbjct: 114 RKSVVGMVTDSDATTIAQSFLQYMQVQSLGQHYDRKLCFELLDCLLERYFDAVTTLGEDL 173
Query: 130 VYGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFAQ 2
+YGICEAID EKDP CL L FH+VE L L PD SG +ASFA+
Sbjct: 174 IYGICEAIDAEKDPDCLKLAFHIVESLAQLNPDSSGLLASFAK 216
>ref|XP_004302857.1| PREDICTED: uncharacterized protein LOC101304108 [Fragaria vesca
subsp. vesca]
Length = 1149
Score = 122 bits (307), Expect = 4e-26
Identities = 58/95 (61%), Positives = 73/95 (76%)
Frame = -1
Query: 292 GMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLVYGICE 113
GMV SDA+ +A+S+ N+ VQSLA +DRKLC E+L+CLL Y + V LG+DL Y I E
Sbjct: 120 GMVSASDAKVVAQSYRENIPVQSLAQQDRKLCFELLECLLQRYPNEVASLGEDLFYAISE 179
Query: 112 AIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASF 8
AIDEEKDP CL+L FH+VE L L+PDPSGP+A+F
Sbjct: 180 AIDEEKDPHCLILTFHIVEALVKLFPDPSGPLATF 214
>ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
[Cucumis sativus]
Length = 1147
Score = 122 bits (305), Expect = 6e-26
Identities = 57/99 (57%), Positives = 74/99 (74%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R G + +DA+++A+S+ N+QVQSL DRKL E+L CLL+ Y DAVV LGDDLV
Sbjct: 115 RKTNVGSISQNDAKSVAQSYFQNLQVQSLGQHDRKLSFELLACLLEHYPDAVVSLGDDLV 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMAS 11
YGICEAID EKDP CL+L F +VE++ L+PDP+G +AS
Sbjct: 175 YGICEAIDGEKDPHCLLLTFRIVELVAKLFPDPTGALAS 213
>ref|XP_006597169.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X4 [Glycine max]
Length = 1095
Score = 121 bits (303), Expect = 1e-25
Identities = 61/102 (59%), Positives = 73/102 (71%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R GMV +SDA T+A+SFL +QVQSL DRKLC E+L CLL+ Y DAV LG+DL+
Sbjct: 115 RKSVVGMVTDSDATTIAQSFLQYMQVQSLGQYDRKLCFELLDCLLERYFDAVTTLGEDLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFAQ 2
YGICEAID EKDP CL L FH+V L L PD S +AS+A+
Sbjct: 175 YGICEAIDAEKDPDCLKLAFHIVASLAQLNPDSSSLLASYAK 216
>ref|XP_006597168.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X3 [Glycine max]
Length = 1102
Score = 121 bits (303), Expect = 1e-25
Identities = 61/102 (59%), Positives = 73/102 (71%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R GMV +SDA T+A+SFL +QVQSL DRKLC E+L CLL+ Y DAV LG+DL+
Sbjct: 115 RKSVVGMVTDSDATTIAQSFLQYMQVQSLGQYDRKLCFELLDCLLERYFDAVTTLGEDLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFAQ 2
YGICEAID EKDP CL L FH+V L L PD S +AS+A+
Sbjct: 175 YGICEAIDAEKDPDCLKLAFHIVASLAQLNPDSSSLLASYAK 216
>ref|XP_006597167.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X2 [Glycine max]
Length = 1133
Score = 121 bits (303), Expect = 1e-25
Identities = 61/102 (59%), Positives = 73/102 (71%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R GMV +SDA T+A+SFL +QVQSL DRKLC E+L CLL+ Y DAV LG+DL+
Sbjct: 115 RKSVVGMVTDSDATTIAQSFLQYMQVQSLGQYDRKLCFELLDCLLERYFDAVTTLGEDLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFAQ 2
YGICEAID EKDP CL L FH+V L L PD S +AS+A+
Sbjct: 175 YGICEAIDAEKDPDCLKLAFHIVASLAQLNPDSSSLLASYAK 216
>ref|XP_003546956.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
X1 [Glycine max]
Length = 1135
Score = 121 bits (303), Expect = 1e-25
Identities = 61/102 (59%), Positives = 73/102 (71%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R GMV +SDA T+A+SFL +QVQSL DRKLC E+L CLL+ Y DAV LG+DL+
Sbjct: 115 RKSVVGMVTDSDATTIAQSFLQYMQVQSLGQYDRKLCFELLDCLLERYFDAVTTLGEDLI 174
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFAQ 2
YGICEAID EKDP CL L FH+V L L PD S +AS+A+
Sbjct: 175 YGICEAIDAEKDPDCLKLAFHIVASLAQLNPDSSSLLASYAK 216
>ref|XP_006595125.1| PREDICTED: DNA repair/transcription protein mms19-like isoform X2
[Glycine max]
Length = 1013
Score = 120 bits (301), Expect = 2e-25
Identities = 62/97 (63%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Frame = -1
Query: 289 MVDNSDARTLAKSFLINVQVQSLAVR-DRKLCLEVLQCLLDAYTDAVVVLGDDLVYGICE 113
MV +SDA T+A+SFL +QVQSL DRKLC E+L CLL+ Y DAV LG+DL+YGICE
Sbjct: 1 MVTDSDATTIAQSFLQYMQVQSLGQHYDRKLCFELLDCLLERYFDAVTTLGEDLIYGICE 60
Query: 112 AIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFAQ 2
AID EKDP CL L FH+VE L L PD SG +ASFA+
Sbjct: 61 AIDAEKDPDCLKLAFHIVESLAQLNPDSSGLLASFAK 97
>gb|ESW22599.1| hypothetical protein PHAVU_005G166100g [Phaseolus vulgaris]
Length = 1145
Score = 119 bits (299), Expect = 3e-25
Identities = 56/102 (54%), Positives = 74/102 (72%)
Frame = -1
Query: 307 RTKKFGMVDNSDARTLAKSFLINVQVQSLAVRDRKLCLEVLQCLLDAYTDAVVVLGDDLV 128
R G+V ++DA+ +A+SF +QVQSL DRKLC E+L CLL+ Y DA+ LGD L+
Sbjct: 116 RKSVLGIVTSTDAKAIAQSFFQYMQVQSLGQSDRKLCFELLDCLLEHYPDAITPLGDGLI 175
Query: 127 YGICEAIDEEKDPRCLMLNFHLVEILGHLYPDPSGPMASFAQ 2
YGICEAID EKDP CLML FH+V+ LYP+ SG +A++A+
Sbjct: 176 YGICEAIDAEKDPECLMLAFHIVQSWAQLYPESSGLLATYAK 217