BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00035224
         (382 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...   129   4e-28
ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein...   129   5e-28
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   129   5e-28
ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein...   128   9e-28
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   127   1e-27
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   127   2e-27
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao...   126   3e-27
ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein...   125   5e-27
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   125   5e-27
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   125   5e-27
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe...   125   6e-27
gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryz...   125   6e-27
gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japo...   125   6e-27
ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group] g...   125   6e-27
ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein...   124   1e-26
gb|EMS56445.1| RNA polymerase-associated protein RTF1-like prote...   124   2e-26
ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea ma...   124   2e-26
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...   124   2e-26
gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegi...   123   2e-26
ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [S...   123   2e-26

>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score =  129 bits (324), Expect = 4e-28
 Identities = 63/79 (79%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DTSAPVD+GT SN+LHDFELPISLA LQKFGGPQG   GFMARKQ+IEAT G +VP++DG
Sbjct: 415 DTSAPVDQGTESNTLHDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRVPENDG 474

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTV DYKRRRGLL
Sbjct: 475 RRHALTLTVGDYKRRRGLL 493


>ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
           vesca subsp. vesca]
          Length = 619

 Score =  129 bits (323), Expect = 5e-28
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT APVD+GT+SN LH+FELPISLA LQKFGGPQG  +GFMARKQ+IEAT G +VP+ DG
Sbjct: 541 DTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDG 600

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 601 RRHALTLSVSDYKRRRGLL 619


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
           vesca subsp. vesca]
          Length = 657

 Score =  129 bits (323), Expect = 5e-28
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT APVD+GT+SN LH+FELPISLA LQKFGGPQG  +GFMARKQ+IEAT G +VP+ DG
Sbjct: 579 DTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDG 638

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 639 RRHALTLSVSDYKRRRGLL 657


>ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog
           [Brachypodium distachyon]
          Length = 658

 Score =  128 bits (321), Expect = 9e-28
 Identities = 58/79 (73%), Positives = 73/79 (92%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+AP+D GT +NSLH+FELPISL+VL+++GGP+G+ +G+MARKQKIEAT GYK+PD+DG
Sbjct: 580 DTNAPLDLGTETNSLHNFELPISLSVLEEYGGPKGLFEGYMARKQKIEATMGYKIPDNDG 639

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 640 RRHALTLSVSDYKRRRGLL 658


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Glycine max] gi|571466984|ref|XP_006583809.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Glycine max]
          Length = 656

 Score =  127 bits (320), Expect = 1e-27
 Identities = 62/79 (78%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DTSAPVD+GT SN LH+FELPISLA+LQKFGG QG   GFMARKQKIEAT G++V ++DG
Sbjct: 578 DTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDG 637

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTVSDYKRRRGLL
Sbjct: 638 RRHALTLTVSDYKRRRGLL 656


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus
           notabilis]
          Length = 658

 Score =  127 bits (318), Expect = 2e-27
 Identities = 60/79 (75%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD+GT SN LH+FELPISL+VLQKFGGPQG   GFMARKQ+IEAT G +VP++DG
Sbjct: 580 DTNAPVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDG 639

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+V DYKRRRGLL
Sbjct: 640 RRHALTLSVGDYKRRRGLL 658


>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
           gi|508781058|gb|EOY28314.1| PAF1 complex component
           isoform 1 [Theobroma cacao]
          Length = 660

 Score =  126 bits (316), Expect = 3e-27
 Identities = 61/79 (77%), Positives = 67/79 (84%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DTSAPVD GT SN LHDFE+PISL  LQ+FGGPQG   GFMARKQ+IEAT G +VP++DG
Sbjct: 582 DTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDG 641

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTVSDYKRRRGLL
Sbjct: 642 RRHALTLTVSDYKRRRGLL 660


>ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Oryza
           brachyantha]
          Length = 645

 Score =  125 bits (315), Expect = 5e-27
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD GT SN LH+FEL ISLA L++FGGP+G+  G+MARKQKIEAT GYKVPD+DG
Sbjct: 567 DTNAPVDLGTESNVLHNFELSISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDG 626

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTVSDYKRRRGLL
Sbjct: 627 RRHALTLTVSDYKRRRGLL 645


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
           tuberosum]
          Length = 652

 Score =  125 bits (315), Expect = 5e-27
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD+GT SN+LHDF+LPISLAVLQKFGG QG   GFMARKQ+IEAT G  VP++DG
Sbjct: 574 DTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDG 633

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 634 RRHALTLSVSDYKRRRGLL 652


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
           [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  125 bits (315), Expect = 5e-27
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD+GT SN+LHDF+LPISLAVLQKFGG QG   GFMARKQ+IEAT G  VP++DG
Sbjct: 567 DTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDG 626

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 627 RRHALTLSVSDYKRRRGLL 645


>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  125 bits (314), Expect = 6e-27
 Identities = 60/79 (75%), Positives = 68/79 (86%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DTSAPVD GT SN +H+FELPISLA LQKFGGPQG  +GF+ARKQ+IEAT G +VP++DG
Sbjct: 568 DTSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDG 627

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTVSDYKRR GLL
Sbjct: 628 RRHALTLTVSDYKRRMGLL 646


>gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryza sativa Japonica
           Group] gi|77556035|gb|ABA98831.1| Plus-3 domain
           containing protein, expressed [Oryza sativa Japonica
           Group] gi|215697432|dbj|BAG91426.1| unnamed protein
           product [Oryza sativa Japonica Group]
          Length = 522

 Score =  125 bits (314), Expect = 6e-27
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD GT SN LH+FEL ISLA L++FGGP+G+  G+MARKQKIEAT GYKVPD+DG
Sbjct: 444 DTNAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDG 503

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTVSDYKRRRGLL
Sbjct: 504 RRHALTLTVSDYKRRRGLL 522


>gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japonica Group]
          Length = 653

 Score =  125 bits (314), Expect = 6e-27
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD GT SN LH+FEL ISLA L++FGGP+G+  G+MARKQKIEAT GYKVPD+DG
Sbjct: 575 DTNAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDG 634

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTVSDYKRRRGLL
Sbjct: 635 RRHALTLTVSDYKRRRGLL 653


>ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group]
           gi|113649443|dbj|BAF29955.1| Os12g0535900, partial
           [Oryza sativa Japonica Group]
          Length = 599

 Score =  125 bits (314), Expect = 6e-27
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD GT SN LH+FEL ISLA L++FGGP+G+  G+MARKQKIEAT GYKVPD+DG
Sbjct: 521 DTNAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDG 580

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTVSDYKRRRGLL
Sbjct: 581 RRHALTLTVSDYKRRRGLL 599


>ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Setaria
           italica]
          Length = 650

 Score =  124 bits (312), Expect = 1e-26
 Identities = 60/79 (75%), Positives = 68/79 (86%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD GT SN LH FELPISL+ LQ+FGG +G+  G+MARKQKIEAT GYKVPD+DG
Sbjct: 572 DTNAPVDLGTESNVLHTFELPISLSALQEFGGAKGLFDGYMARKQKIEATMGYKVPDNDG 631

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 632 RRHALTLSVSDYKRRRGLL 650


>gb|EMS56445.1| RNA polymerase-associated protein RTF1-like protein [Triticum
           urartu]
          Length = 681

 Score =  124 bits (310), Expect = 2e-26
 Identities = 57/79 (72%), Positives = 70/79 (88%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+AP+D GT +N LH+FELPISLAVL+++GGP+G  + +MARKQKIEAT GYK+PD+DG
Sbjct: 603 DTNAPLDLGTETNPLHNFELPISLAVLEQYGGPKGQFEAYMARKQKIEATMGYKIPDNDG 662

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 663 RRHALTLSVSDYKRRRGLL 681


>ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea mays]
           gi|223950353|gb|ACN29260.1| unknown [Zea mays]
           gi|413916604|gb|AFW56536.1| plus-3 domain-containing
           protein [Zea mays]
          Length = 650

 Score =  124 bits (310), Expect = 2e-26
 Identities = 59/79 (74%), Positives = 68/79 (86%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD GT SN LH FELPISL+ LQ+FGG +G+  G+MAR+QKIEAT GYKVPD+DG
Sbjct: 572 DTNAPVDLGTESNMLHTFELPISLSALQEFGGAKGLFDGYMARRQKIEATMGYKVPDNDG 631

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 632 RRHALTLSVSDYKRRRGLL 650


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
           truncatula] gi|355500443|gb|AES81646.1| RNA
           polymerase-associated protein RTF1-like protein
           [Medicago truncatula]
          Length = 624

 Score =  124 bits (310), Expect = 2e-26
 Identities = 59/79 (74%), Positives = 67/79 (84%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT APVD GT SN LHDFELPISLA+LQKFGG +GV  GFMA+KQ+IE   G++VP++DG
Sbjct: 546 DTRAPVDEGTESNVLHDFELPISLAMLQKFGGAKGVQAGFMAKKQRIEEVVGFRVPENDG 605

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L LTVSDYKRRRGLL
Sbjct: 606 RRHQLTLTVSDYKRRRGLL 624


>gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegilops tauschii]
          Length = 661

 Score =  123 bits (309), Expect = 2e-26
 Identities = 56/79 (70%), Positives = 70/79 (88%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+AP+D GT +N LH+FELPISLA+L+++GGP+G  + +MARKQKIEAT GYK+PD+DG
Sbjct: 583 DTNAPLDLGTETNPLHNFELPISLAILEQYGGPKGQFEAYMARKQKIEATMGYKIPDNDG 642

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 643 RRHALTLSVSDYKRRRGLL 661


>ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [Sorghum bicolor]
           gi|241942942|gb|EES16087.1| hypothetical protein
           SORBIDRAFT_08g017010 [Sorghum bicolor]
          Length = 656

 Score =  123 bits (309), Expect = 2e-26
 Identities = 59/79 (74%), Positives = 68/79 (86%)
 Frame = -3

Query: 248 DTSAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDG 69
           DT+APVD GT SN LH FELPISL+ LQ+FGG +G+  G+MAR+QKIEAT GYKVPD+DG
Sbjct: 578 DTNAPVDLGTESNVLHTFELPISLSALQEFGGAKGLFDGYMARRQKIEATMGYKVPDNDG 637

Query: 68  RRHPLILTVSDYKRRRGLL 12
           RRH L L+VSDYKRRRGLL
Sbjct: 638 RRHALTLSVSDYKRRRGLL 656