BLASTX nr result
ID: Zingiber24_contig00033758
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00033758
(268 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 115 8e-24
ref|XP_006361289.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 114 2e-23
ref|XP_006361288.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 114 2e-23
ref|XP_006361286.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 114 2e-23
gb|ADE75679.1| unknown [Picea sitchensis] 114 2e-23
ref|XP_006386093.1| hypothetical protein POPTR_0003s22040g [Popu... 113 2e-23
ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vi... 113 3e-23
ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 113 3e-23
ref|XP_002513444.1| Type II DNA topoisomerase VI subunit B, puta... 113 3e-23
emb|CBI16435.3| unnamed protein product [Vitis vinifera] 113 3e-23
ref|XP_006297133.1| hypothetical protein CARUB_v10013135mg [Caps... 112 5e-23
ref|XP_006406350.1| hypothetical protein EUTSA_v10020214mg [Eutr... 110 1e-22
ref|XP_004228355.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 110 1e-22
ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago trun... 110 1e-22
dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Ara... 110 3e-22
gb|EOY32515.1| Topoisomerase 6 subunit B isoform 1 [Theobroma ca... 110 3e-22
ref|XP_002885404.1| hypothetical protein ARALYDRAFT_318827 [Arab... 110 3e-22
ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thal... 110 3e-22
ref|XP_006660492.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 109 3e-22
ref|XP_003576379.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 109 4e-22
>ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
gi|449525918|ref|XP_004169963.1| PREDICTED: DNA
topoisomerase 6 subunit B-like [Cucumis sativus]
Length = 696
Score = 115 bits (287), Expect = 8e-24
Identities = 56/77 (72%), Positives = 67/77 (87%)
Frame = +2
Query: 17 SPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENA 196
SPDEPK +G+SK +K ES+LKQKSPAEFFAENKNIAGFDNPGK LYTT+RELVEN+
Sbjct: 9 SPDEPK---KGKSKTPRKPKESILKQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENS 65
Query: 197 LDSAEAISQLPDIELVM 247
LDSAE+IS+LP +E+ +
Sbjct: 66 LDSAESISELPVVEITI 82
>ref|XP_006361289.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform X4 [Solanum
tuberosum]
Length = 547
Score = 114 bits (284), Expect = 2e-23
Identities = 52/77 (67%), Positives = 66/77 (85%)
Frame = +2
Query: 17 SPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENA 196
S + P+ P +G+SK +K +S+LKQKSPAEFFA+NKNIAGFDNPGK LYTT+RELVENA
Sbjct: 6 SSESPEVPKKGKSKTPRKPKDSILKQKSPAEFFADNKNIAGFDNPGKCLYTTVRELVENA 65
Query: 197 LDSAEAISQLPDIELVM 247
LDSAE+IS+LP +E+ +
Sbjct: 66 LDSAESISELPVVEITI 82
>ref|XP_006361288.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform X3 [Solanum
tuberosum]
Length = 562
Score = 114 bits (284), Expect = 2e-23
Identities = 52/77 (67%), Positives = 66/77 (85%)
Frame = +2
Query: 17 SPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENA 196
S + P+ P +G+SK +K +S+LKQKSPAEFFA+NKNIAGFDNPGK LYTT+RELVENA
Sbjct: 6 SSESPEVPKKGKSKTPRKPKDSILKQKSPAEFFADNKNIAGFDNPGKCLYTTVRELVENA 65
Query: 197 LDSAEAISQLPDIELVM 247
LDSAE+IS+LP +E+ +
Sbjct: 66 LDSAESISELPVVEITI 82
>ref|XP_006361286.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform X1 [Solanum
tuberosum]
Length = 673
Score = 114 bits (284), Expect = 2e-23
Identities = 52/77 (67%), Positives = 66/77 (85%)
Frame = +2
Query: 17 SPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENA 196
S + P+ P +G+SK +K +S+LKQKSPAEFFA+NKNIAGFDNPGK LYTT+RELVENA
Sbjct: 6 SSESPEVPKKGKSKTPRKPKDSILKQKSPAEFFADNKNIAGFDNPGKCLYTTVRELVENA 65
Query: 197 LDSAEAISQLPDIELVM 247
LDSAE+IS+LP +E+ +
Sbjct: 66 LDSAESISELPVVEITI 82
>gb|ADE75679.1| unknown [Picea sitchensis]
Length = 676
Score = 114 bits (284), Expect = 2e-23
Identities = 55/79 (69%), Positives = 64/79 (81%)
Frame = +2
Query: 11 DGSPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVE 190
DGSP EPK + +SK K ESVL QKSPAEFFAENKNIAGFDNPGKSLYTT+REL E
Sbjct: 7 DGSPVEPKQKKKAKSKTPAKGKESVLTQKSPAEFFAENKNIAGFDNPGKSLYTTVRELAE 66
Query: 191 NALDSAEAISQLPDIELVM 247
NALDS E++++LP IE+ +
Sbjct: 67 NALDSTESVAELPAIEVTI 85
>ref|XP_006386093.1| hypothetical protein POPTR_0003s22040g [Populus trichocarpa]
gi|550343750|gb|ERP63890.1| hypothetical protein
POPTR_0003s22040g [Populus trichocarpa]
Length = 673
Score = 113 bits (283), Expect = 2e-23
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = +2
Query: 8 VDGSPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELV 187
+ GS + +G+SK +K ES+LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELV
Sbjct: 3 IGGSSESQNETKKGKSKTPRKPKESLLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELV 62
Query: 188 ENALDSAEAISQLPDIELVM 247
EN+LDSAEAIS+LP +E+ +
Sbjct: 63 ENSLDSAEAISELPVVEITI 82
>ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vitis vinifera]
Length = 656
Score = 113 bits (282), Expect = 3e-23
Identities = 53/78 (67%), Positives = 66/78 (84%)
Frame = +2
Query: 14 GSPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVEN 193
GS + P P + +SK +K E+ LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVEN
Sbjct: 5 GSSEIPTEPKKTKSKTARKPKENPLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN 64
Query: 194 ALDSAEAISQLPDIELVM 247
+LDSAE+IS+LP++E+ +
Sbjct: 65 SLDSAESISELPEVEITI 82
>ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform 1 [Glycine
max]
Length = 673
Score = 113 bits (282), Expect = 3e-23
Identities = 53/79 (67%), Positives = 66/79 (83%)
Frame = +2
Query: 11 DGSPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVE 190
DGS + P + +SK +K E++LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVE
Sbjct: 4 DGSSESPIETKKAKSKTPRKPKETILKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVE 63
Query: 191 NALDSAEAISQLPDIELVM 247
N+LDSAE+IS+LP +E+ +
Sbjct: 64 NSLDSAESISELPVVEITI 82
>ref|XP_002513444.1| Type II DNA topoisomerase VI subunit B, putative [Ricinus communis]
gi|223547352|gb|EEF48847.1| Type II DNA topoisomerase VI
subunit B, putative [Ricinus communis]
Length = 656
Score = 113 bits (282), Expect = 3e-23
Identities = 53/78 (67%), Positives = 64/78 (82%)
Frame = +2
Query: 14 GSPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVEN 193
GS + P P + +SK +K ES LKQKSPAEFFAENKNIAGFDNPGK LYTT+RELVEN
Sbjct: 5 GSSESPNEPKKSKSKTPRKPKESTLKQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVEN 64
Query: 194 ALDSAEAISQLPDIELVM 247
+LDSAE+IS+LP +E+ +
Sbjct: 65 SLDSAESISELPFVEITI 82
>emb|CBI16435.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 113 bits (282), Expect = 3e-23
Identities = 53/78 (67%), Positives = 66/78 (84%)
Frame = +2
Query: 14 GSPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVEN 193
GS + P P + +SK +K E+ LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVEN
Sbjct: 5 GSSEIPTEPKKTKSKTARKPKENPLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN 64
Query: 194 ALDSAEAISQLPDIELVM 247
+LDSAE+IS+LP++E+ +
Sbjct: 65 SLDSAESISELPEVEITI 82
>ref|XP_006297133.1| hypothetical protein CARUB_v10013135mg [Capsella rubella]
gi|482565842|gb|EOA30031.1| hypothetical protein
CARUB_v10013135mg [Capsella rubella]
Length = 670
Score = 112 bits (280), Expect = 5e-23
Identities = 54/75 (72%), Positives = 63/75 (84%)
Frame = +2
Query: 23 DEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALD 202
D+ +G SK TK ES LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVENALD
Sbjct: 4 DDLAETKKGSSKNTKNSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALD 63
Query: 203 SAEAISQLPDIELVM 247
SAE+IS+LP++E+ +
Sbjct: 64 SAESISELPEVEVTI 78
>ref|XP_006406350.1| hypothetical protein EUTSA_v10020214mg [Eutrema salsugineum]
gi|557107496|gb|ESQ47803.1| hypothetical protein
EUTSA_v10020214mg [Eutrema salsugineum]
Length = 671
Score = 110 bits (276), Expect = 1e-22
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2
Query: 14 GSPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVEN 193
G +T +G SKK KE+ S LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVEN
Sbjct: 3 GDDTPAETKKKGSSKKNSKES-STLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN 61
Query: 194 ALDSAEAISQLPDIELVM 247
ALDSAE+IS+LP++E+ +
Sbjct: 62 ALDSAESISELPEVEVTI 79
>ref|XP_004228355.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Solanum
lycopersicum]
Length = 672
Score = 110 bits (276), Expect = 1e-22
Identities = 51/77 (66%), Positives = 65/77 (84%)
Frame = +2
Query: 17 SPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENA 196
S + P+ +G+SK +K +S+LKQKSPAEFFA+NKNIAGFDNPGK LYTT+RELVENA
Sbjct: 6 SSESPEVAKKGKSKTPRKPKDSILKQKSPAEFFADNKNIAGFDNPGKCLYTTVRELVENA 65
Query: 197 LDSAEAISQLPDIELVM 247
LDSAE+IS+LP +E+ +
Sbjct: 66 LDSAESISELPVVEITI 82
>ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago truncatula]
gi|355486528|gb|AES67731.1| DNA topoisomerase 6 subunit
B [Medicago truncatula]
Length = 671
Score = 110 bits (276), Expect = 1e-22
Identities = 53/80 (66%), Positives = 66/80 (82%)
Frame = +2
Query: 8 VDGSPDEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELV 187
+D + + P + +SK +K E+VLKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELV
Sbjct: 1 MDENSESPIESKKSKSKTPRKPKETVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELV 60
Query: 188 ENALDSAEAISQLPDIELVM 247
ENALDSAE+IS+LP +E+ +
Sbjct: 61 ENALDSAESISELPVVEITI 80
>dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana]
Length = 694
Score = 110 bits (274), Expect = 3e-22
Identities = 53/75 (70%), Positives = 63/75 (84%)
Frame = +2
Query: 23 DEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALD 202
D+ +G SK +K ES LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVENALD
Sbjct: 4 DDLVETKKGSSKNSKDSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALD 63
Query: 203 SAEAISQLPDIELVM 247
SAE+IS+LP++E+ +
Sbjct: 64 SAESISELPEVEVTI 78
>gb|EOY32515.1| Topoisomerase 6 subunit B isoform 1 [Theobroma cacao]
Length = 669
Score = 110 bits (274), Expect = 3e-22
Identities = 52/75 (69%), Positives = 63/75 (84%)
Frame = +2
Query: 23 DEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALD 202
+ P +G+SK +K ES+LKQKSPAEFFAENKNIAGFDNPGK LYTT+RELVENALD
Sbjct: 4 ESPIETKKGKSKTPRKAKESILKQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENALD 63
Query: 203 SAEAISQLPDIELVM 247
SAE+IS+LP +E+ +
Sbjct: 64 SAESISELPVVEITI 78
>ref|XP_002885404.1| hypothetical protein ARALYDRAFT_318827 [Arabidopsis lyrata subsp.
lyrata] gi|297331244|gb|EFH61663.1| hypothetical protein
ARALYDRAFT_318827 [Arabidopsis lyrata subsp. lyrata]
Length = 691
Score = 110 bits (274), Expect = 3e-22
Identities = 53/75 (70%), Positives = 62/75 (82%)
Frame = +2
Query: 23 DEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALD 202
D+ +G SK K ES LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVENALD
Sbjct: 4 DDLAETKKGSSKNPKNSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALD 63
Query: 203 SAEAISQLPDIELVM 247
SAE+IS+LP++E+ +
Sbjct: 64 SAESISELPEVEVTI 78
>ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana]
gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA
topoisomerase 6 subunit B; Short=AtTOP6B; AltName:
Full=Protein BRASSINOSTEROID INSENSITIVE 3; AltName:
Full=Protein ELONGATED HYPOCOTYL 6; AltName:
Full=Protein ROOT HAIRLESS 3 gi|12331188|emb|CAC24690.1|
topoisomerase 6 subunit B [Arabidopsis thaliana]
gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit
B [Arabidopsis thaliana]
Length = 670
Score = 110 bits (274), Expect = 3e-22
Identities = 53/75 (70%), Positives = 63/75 (84%)
Frame = +2
Query: 23 DEPKTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALD 202
D+ +G SK +K ES LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVENALD
Sbjct: 4 DDLVETKKGSSKNSKDSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALD 63
Query: 203 SAEAISQLPDIELVM 247
SAE+IS+LP++E+ +
Sbjct: 64 SAESISELPEVEVTI 78
>ref|XP_006660492.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Oryza brachyantha]
Length = 696
Score = 109 bits (273), Expect = 3e-22
Identities = 55/72 (76%), Positives = 64/72 (88%)
Frame = +2
Query: 32 KTPNRGRSKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALDSAE 211
K P++ S T KE+ S+LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVENALDSAE
Sbjct: 36 KAPSKAASAATAKES-SLLKQKSPAEFFAENKNIAGFDNPGKSLYTTMRELVENALDSAE 94
Query: 212 AISQLPDIELVM 247
+IS+LPDIE+ +
Sbjct: 95 SISELPDIEITI 106
>ref|XP_003576379.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Brachypodium
distachyon]
Length = 688
Score = 109 bits (272), Expect = 4e-22
Identities = 55/73 (75%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Frame = +2
Query: 32 KTPNRGR-SKKTKKETESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALDSA 208
K +G+ S K E ES LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVENALDSA
Sbjct: 26 KVTGKGKASSKASPEAESSLKQKSPAEFFAENKNIAGFDNPGKSLYTTLRELVENALDSA 85
Query: 209 EAISQLPDIELVM 247
E+IS+LPDIE+ +
Sbjct: 86 ESISELPDIEITI 98