BLASTX nr result
ID: Zingiber24_contig00032674
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00032674
(413 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006850874.1| hypothetical protein AMTR_s00025p00149970 [A... 165 5e-39
ref|XP_003581620.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA... 156 3e-36
gb|EMS49279.1| Putative DNA ligase 4 [Triticum urartu] 152 4e-35
ref|XP_004978220.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA... 149 4e-34
gb|EEE61635.1| hypothetical protein OsJ_16077 [Oryza sativa Japo... 147 1e-33
sp|Q7X7E9.2|DNLI4_ORYSJ RecName: Full=Putative DNA ligase 4; Alt... 147 1e-33
gb|EEC77947.1| hypothetical protein OsI_17298 [Oryza sativa Indi... 147 2e-33
emb|CAH66777.1| OSIGBa0113I13.3 [Oryza sativa Indica Group] 147 2e-33
ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus] 143 2e-32
gb|EOY32048.1| DNA ligase IV [Theobroma cacao] 141 8e-32
ref|XP_003595076.1| DNA ligase [Medicago truncatula] gi|35548412... 141 8e-32
ref|XP_006653742.1| PREDICTED: putative DNA ligase 4-like [Oryza... 139 5e-31
ref|XP_004297907.1| PREDICTED: DNA ligase 4-like [Fragaria vesca... 138 9e-31
ref|XP_002448485.1| hypothetical protein SORBIDRAFT_06g027820 [S... 138 9e-31
emb|CBI17913.3| unnamed protein product [Vitis vinifera] 135 4e-30
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera] 135 4e-30
emb|CAN60030.1| hypothetical protein VITISV_000373 [Vitis vinifera] 135 4e-30
gb|EMJ27982.1| hypothetical protein PRUPE_ppa018049mg, partial [... 135 6e-30
ref|XP_002973996.1| hypothetical protein SELMODRAFT_414166 [Sela... 135 7e-30
ref|XP_002983499.1| hypothetical protein SELMODRAFT_422836 [Sela... 135 7e-30
>ref|XP_006850874.1| hypothetical protein AMTR_s00025p00149970 [Amborella trichopoda]
gi|548854545|gb|ERN12455.1| hypothetical protein
AMTR_s00025p00149970 [Amborella trichopoda]
Length = 1120
Score = 165 bits (418), Expect = 5e-39
Identities = 78/108 (72%), Positives = 94/108 (87%)
Frame = -2
Query: 325 MTDATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERG 146
M+D TV+F +L SMFQA+ R++++V KRK FRTFLD VY +EYFSAIRLILP LDRERG
Sbjct: 1 MSDETVKFSVLCSMFQALARNKSSVMKRKHFRTFLDHVYKSKEYFSAIRLILPSLDRERG 60
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
TYGLKES LA CL+DALG++++S DALRLINWRKGGA++G NAGNFAL
Sbjct: 61 TYGLKESVLATCLIDALGISRESEDALRLINWRKGGAKTGPNAGNFAL 108
>ref|XP_003581620.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA ligase 4-like
[Brachypodium distachyon]
Length = 1249
Score = 156 bits (394), Expect = 3e-36
Identities = 80/108 (74%), Positives = 91/108 (84%), Gaps = 3/108 (2%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVY--TGRE-YFSAIRLILPGLDRERG 146
ATVRFGLLV+MFQAM RDR + KKR R R FLDR Y GR+ YFSA+RL+LP LDRERG
Sbjct: 3 ATVRFGLLVAMFQAMSRDRTSAKKRGRLRAFLDRAYGAPGRDDYFSALRLVLPSLDRERG 62
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
+YGLKE+ALAA LVDALG+AKDSPDA+RL NWR+GG SG NAGNF+L
Sbjct: 63 SYGLKEAALAAALVDALGIAKDSPDAVRLTNWRRGGGGSGRNAGNFSL 110
>gb|EMS49279.1| Putative DNA ligase 4 [Triticum urartu]
Length = 206
Score = 152 bits (384), Expect = 4e-35
Identities = 80/108 (74%), Positives = 92/108 (85%), Gaps = 3/108 (2%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVY--TGRE-YFSAIRLILPGLDRERG 146
ATVRFGLLV+MFQAM RDR + KKR R RTFLDR Y +GR+ YFSA+RLILP LDRERG
Sbjct: 3 ATVRFGLLVAMFQAMTRDRTSAKKRGRLRTFLDRAYGASGRDDYFSALRLILPSLDRERG 62
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
+YGLKE+ALAA LV+ALG+AKDSPDA+RL NWR+GG G NAGNF+L
Sbjct: 63 SYGLKEAALAAALVEALGIAKDSPDAVRLTNWRRGG--GGRNAGNFSL 108
>ref|XP_004978220.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA ligase 4-like [Setaria
italica]
Length = 1241
Score = 149 bits (376), Expect = 4e-34
Identities = 79/109 (72%), Positives = 90/109 (82%), Gaps = 4/109 (3%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYT---GRE-YFSAIRLILPGLDRER 149
A VRFGLLV+MFQAM D+ + KKR R R FLDR Y GR+ +FSA+RL+LPGLDRER
Sbjct: 3 AKVRFGLLVAMFQAMSGDKGSAKKRGRLRVFLDRAYVPSGGRDDFFSALRLVLPGLDRER 62
Query: 148 GTYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
GTYGLKE+ALAA LVDALG+AKDSPDA+RLINWR+GG G NAGNFAL
Sbjct: 63 GTYGLKEAALAAVLVDALGIAKDSPDAVRLINWRRGG--GGRNAGNFAL 109
>gb|EEE61635.1| hypothetical protein OsJ_16077 [Oryza sativa Japonica Group]
Length = 1322
Score = 147 bits (372), Expect = 1e-33
Identities = 79/108 (73%), Positives = 89/108 (82%), Gaps = 3/108 (2%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYT--GRE-YFSAIRLILPGLDRERG 146
ATVRFGLLV+MFQAM RDR A KKR R R LDR Y GR+ YFSA+RL+LPGLDRERG
Sbjct: 3 ATVRFGLLVAMFQAMSRDRTAAKKRARLRALLDRAYGPGGRDDYFSALRLVLPGLDRERG 62
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
+YGLKE+ALA+ LVDALG+AKDSPDA+RL NWR+GG NAGNFAL
Sbjct: 63 SYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGG--GFRNAGNFAL 108
>sp|Q7X7E9.2|DNLI4_ORYSJ RecName: Full=Putative DNA ligase 4; AltName: Full=DNA ligase IV;
AltName: Full=Polydeoxyribonucleotide synthase [ATP] 4
gi|38346547|emb|CAD41778.2| OSJNBa0035M09.8 [Oryza
sativa Japonica Group]
Length = 1322
Score = 147 bits (372), Expect = 1e-33
Identities = 79/108 (73%), Positives = 89/108 (82%), Gaps = 3/108 (2%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYT--GRE-YFSAIRLILPGLDRERG 146
ATVRFGLLV+MFQAM RDR A KKR R R LDR Y GR+ YFSA+RL+LPGLDRERG
Sbjct: 3 ATVRFGLLVAMFQAMSRDRTAAKKRARLRALLDRAYGPGGRDDYFSALRLVLPGLDRERG 62
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
+YGLKE+ALA+ LVDALG+AKDSPDA+RL NWR+GG NAGNFAL
Sbjct: 63 SYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGG--GFRNAGNFAL 108
>gb|EEC77947.1| hypothetical protein OsI_17298 [Oryza sativa Indica Group]
Length = 1322
Score = 147 bits (370), Expect = 2e-33
Identities = 79/108 (73%), Positives = 89/108 (82%), Gaps = 3/108 (2%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYT--GRE-YFSAIRLILPGLDRERG 146
ATVRFGLLV+MFQAM RDR A KKR R R LDR Y GR+ YFSA+RL+LPGLDRERG
Sbjct: 3 ATVRFGLLVAMFQAMSRDRTAEKKRARLRALLDRAYGPGGRDDYFSALRLVLPGLDRERG 62
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
+YGLKE+ALA+ LVDALG+AKDSPDA+RL NWR+GG NAGNFAL
Sbjct: 63 SYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGG--GFRNAGNFAL 108
>emb|CAH66777.1| OSIGBa0113I13.3 [Oryza sativa Indica Group]
Length = 1281
Score = 147 bits (370), Expect = 2e-33
Identities = 79/108 (73%), Positives = 89/108 (82%), Gaps = 3/108 (2%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYT--GRE-YFSAIRLILPGLDRERG 146
ATVRFGLLV+MFQAM RDR A KKR R R LDR Y GR+ YFSA+RL+LPGLDRERG
Sbjct: 3 ATVRFGLLVAMFQAMSRDRTAEKKRARLRALLDRAYGPGGRDDYFSALRLVLPGLDRERG 62
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
+YGLKE+ALA+ LVDALG+AKDSPDA+RL NWR+GG NAGNFAL
Sbjct: 63 SYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGG--GFRNAGNFAL 108
>ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]
Length = 1214
Score = 143 bits (361), Expect = 2e-32
Identities = 68/103 (66%), Positives = 84/103 (81%)
Frame = -2
Query: 310 VRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERGTYGLK 131
++F +L S+F + R +++ KKR +FR FLD + YFSAIRLILP LDRERGTYGLK
Sbjct: 5 IKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFCSPSHYFSAIRLILPSLDRERGTYGLK 64
Query: 130 ESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
ES LA CL+DALG+++DS DALRLINWRKGGA++GANAGNFAL
Sbjct: 65 ESVLATCLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFAL 107
>gb|EOY32048.1| DNA ligase IV [Theobroma cacao]
Length = 1195
Score = 141 bits (356), Expect = 8e-32
Identities = 66/103 (64%), Positives = 83/103 (80%)
Frame = -2
Query: 310 VRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERGTYGLK 131
++ ++VS+F + + + + KKR +FR FLD +YFSA+RLILP LDRERGTYGLK
Sbjct: 5 IKLSVVVSLFSWIQKSKTSAKKRSKFRKFLDTFCKPSDYFSAMRLILPSLDRERGTYGLK 64
Query: 130 ESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
ES LA CL+DALG+++DSPDALRLINWRKGGA +GANAGNFAL
Sbjct: 65 ESVLAICLIDALGMSRDSPDALRLINWRKGGANTGANAGNFAL 107
>ref|XP_003595076.1| DNA ligase [Medicago truncatula] gi|355484124|gb|AES65327.1| DNA
ligase [Medicago truncatula]
Length = 1244
Score = 141 bits (356), Expect = 8e-32
Identities = 72/108 (66%), Positives = 84/108 (77%)
Frame = -2
Query: 325 MTDATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERG 146
MT+ T +F +L S+F R +A KKR +FR FLD T R YF AIRLILP LDRERG
Sbjct: 1 MTELT-KFSVLCSLFTWTQRTKAPAKKRAKFRKFLDNFCTDRNYFPAIRLILPNLDRERG 59
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
+YGLKES LA L+DALG+AKDS DALRL+NWRKGGA++GANAGNFAL
Sbjct: 60 SYGLKESVLATSLIDALGMAKDSHDALRLVNWRKGGAKTGANAGNFAL 107
>ref|XP_006653742.1| PREDICTED: putative DNA ligase 4-like [Oryza brachyantha]
Length = 1310
Score = 139 bits (349), Expect = 5e-31
Identities = 79/120 (65%), Positives = 90/120 (75%), Gaps = 15/120 (12%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVY--TGRE-YFSAIRLILPGLDRERG 146
ATVRFGLLV+M QAM RDR A KKR R R LDR Y +GR+ YFSA+RL+LPGLDRERG
Sbjct: 3 ATVRFGLLVAMLQAMSRDRTAAKKRGRLRALLDRAYGPSGRDDYFSALRLVLPGLDRERG 62
Query: 145 T------------YGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
+ YGLKE+ALA+ LVDALG+AKDSPDA+RL NWR+GG S NAGNFAL
Sbjct: 63 SDGLKEAAPARGSYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGG--SFRNAGNFAL 120
>ref|XP_004297907.1| PREDICTED: DNA ligase 4-like [Fragaria vesca subsp. vesca]
Length = 1188
Score = 138 bits (347), Expect = 9e-31
Identities = 65/102 (63%), Positives = 81/102 (79%)
Frame = -2
Query: 307 RFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERGTYGLKE 128
+F +L S+F + R + + KR +FR FLD +YF+AIRL+LP LDRERG+YGLKE
Sbjct: 9 KFSVLCSLFNWIQRSKTSALKRSKFRKFLDNFCKPSDYFAAIRLVLPNLDRERGSYGLKE 68
Query: 127 SALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
S LA CL+DALG+++DS DALRLINWRKGGAR+GANAGNFAL
Sbjct: 69 SVLATCLIDALGMSRDSDDALRLINWRKGGARTGANAGNFAL 110
>ref|XP_002448485.1| hypothetical protein SORBIDRAFT_06g027820 [Sorghum bicolor]
gi|241939668|gb|EES12813.1| hypothetical protein
SORBIDRAFT_06g027820 [Sorghum bicolor]
Length = 1164
Score = 138 bits (347), Expect = 9e-31
Identities = 74/109 (67%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
Frame = -2
Query: 316 ATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYT---GRE-YFSAIRLILPGLDRER 149
A VRF LLV+MFQAM D+++ KKR R R FLDR Y GR+ YFSA+RL+LPGLDRER
Sbjct: 3 AKVRFSLLVAMFQAMSGDKSSAKKRSRLRAFLDRAYVPSGGRDDYFSALRLVLPGLDRER 62
Query: 148 GTYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
GTYGLKE+ LAA LVDALG+AKDS DA+RL NWR+GG NAGNF L
Sbjct: 63 GTYGLKEATLAAVLVDALGIAKDSADAVRLTNWRRGG--GFRNAGNFGL 109
>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
Length = 1163
Score = 135 bits (341), Expect = 4e-30
Identities = 65/102 (63%), Positives = 80/102 (78%)
Frame = -2
Query: 307 RFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERGTYGLKE 128
+F +L S+F + R R + KKR +FR FLD FSAIRLILP LDRERG+YGLKE
Sbjct: 6 KFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGSYGLKE 65
Query: 127 SALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
S LA CL+DALG++++S DALRLINWRKGGA++GANAGNFA+
Sbjct: 66 SVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAM 107
>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
Length = 1162
Score = 135 bits (341), Expect = 4e-30
Identities = 65/102 (63%), Positives = 80/102 (78%)
Frame = -2
Query: 307 RFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERGTYGLKE 128
+F +L S+F + R R + KKR +FR FLD FSAIRLILP LDRERG+YGLKE
Sbjct: 6 KFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGSYGLKE 65
Query: 127 SALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
S LA CL+DALG++++S DALRLINWRKGGA++GANAGNFA+
Sbjct: 66 SVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAM 107
>emb|CAN60030.1| hypothetical protein VITISV_000373 [Vitis vinifera]
Length = 304
Score = 135 bits (341), Expect = 4e-30
Identities = 65/102 (63%), Positives = 80/102 (78%)
Frame = -2
Query: 307 RFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERGTYGLKE 128
+F +L S+F + R R + KKR +FR FLD FSAIRLILP LDRERG+YGLKE
Sbjct: 6 KFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGSYGLKE 65
Query: 127 SALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
S LA CL+DALG++++S DALRLINWRKGGA++GANAGNFA+
Sbjct: 66 SVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAM 107
>gb|EMJ27982.1| hypothetical protein PRUPE_ppa018049mg, partial [Prunus persica]
Length = 539
Score = 135 bits (340), Expect = 6e-30
Identities = 64/102 (62%), Positives = 79/102 (77%)
Frame = -2
Query: 307 RFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERGTYGLKE 128
+F +L S+F M R + + KR +FR FLD +YF +IRLILP LDRERG+YGLKE
Sbjct: 6 KFSVLCSLFNWMQRSKTSTLKRSKFRKFLDTFCKPADYFDSIRLILPSLDRERGSYGLKE 65
Query: 127 SALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
S LA CL+DALG+A+DS DALRLINWRKGGA++G NAGNF+L
Sbjct: 66 SVLATCLIDALGMARDSEDALRLINWRKGGAKTGVNAGNFSL 107
>ref|XP_002973996.1| hypothetical protein SELMODRAFT_414166 [Selaginella moellendorffii]
gi|300158328|gb|EFJ24951.1| hypothetical protein
SELMODRAFT_414166 [Selaginella moellendorffii]
Length = 1171
Score = 135 bits (339), Expect = 7e-30
Identities = 67/108 (62%), Positives = 78/108 (72%)
Frame = -2
Query: 325 MTDATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERG 146
M + TVRF + M + + + + KRK FRTFLD YT REYFS +RL+LP LDRERG
Sbjct: 1 MGENTVRFSAVSDMLERISKSKKLPVKRKTFRTFLDHFYTDREYFSVMRLVLPELDRERG 60
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
YGLKES LA CL DALGLAK S DA +L+NWRKGG+ G NAGNFAL
Sbjct: 61 NYGLKESVLAKCLADALGLAKGSSDADKLVNWRKGGSSVGKNAGNFAL 108
>ref|XP_002983499.1| hypothetical protein SELMODRAFT_422836 [Selaginella moellendorffii]
gi|300148742|gb|EFJ15400.1| hypothetical protein
SELMODRAFT_422836 [Selaginella moellendorffii]
Length = 1172
Score = 135 bits (339), Expect = 7e-30
Identities = 67/108 (62%), Positives = 78/108 (72%)
Frame = -2
Query: 325 MTDATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERG 146
M + TVRF + M + + + + KRK FRTFLD YT REYFS +RL+LP LDRERG
Sbjct: 1 MGENTVRFSAVSDMLERISKSKKLPVKRKTFRTFLDHFYTDREYFSVMRLVLPELDRERG 60
Query: 145 TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFAL 2
YGLKES LA CL DALGLAK S DA +L+NWRKGG+ G NAGNFAL
Sbjct: 61 NYGLKESVLAKCLADALGLAKGSSDADKLVNWRKGGSSVGKNAGNFAL 108