BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00032594
         (1086 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   268   2e-69
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   268   2e-69
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom...   260   8e-67
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe...   254   4e-65
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   252   2e-64
ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A...   252   2e-64
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   252   2e-64
ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citr...   251   3e-64
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   251   3e-64
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   249   1e-63
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   248   2e-63
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   245   3e-62
emb|CAB83107.1| sigma factor 3 [Sinapis alba]                         241   3e-61
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   237   5e-60
gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlise...   236   9e-60
ref|XP_006601060.1| PREDICTED: RNA polymerase sigma factor sigC ...   236   1e-59
ref|XP_006601059.1| PREDICTED: RNA polymerase sigma factor sigC ...   236   1e-59
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   236   1e-59
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...   235   2e-59
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   235   2e-59

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  268 bits (686), Expect = 2e-69
 Identities = 141/321 (43%), Positives = 203/321 (63%), Gaps = 4/321 (1%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIRSSNLVNKHL 308
            +EN+D +E++   ++M+RLE+DI+  L RLGA+KLF  C S+ + T T     +   +H+
Sbjct: 131  LENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHI 190

Query: 309  DAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDE---LFS 479
                     D+  D +VV S                        +P+++  K       S
Sbjct: 191  RECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVS 250

Query: 480  LRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAE 659
              KR L +       +KR + AKNE+EMS GVK +ANLE++   LEE++G   S + WAE
Sbjct: 251  TVKRTLNS------RRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAE 304

Query: 660  AAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGT 839
            AAG+++K L+ +LQFGWYCRD+L+RST SLV+++A+NYRGMG+AF+D++QAG +GVL G 
Sbjct: 305  AAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGA 364

Query: 840  ERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGK 1019
            ER+D  KGYRFSTYVQYWIRKS+  ++A H+R VK+P  +   I QIQK ++  + S G+
Sbjct: 365  ERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGR 424

Query: 1020 YPNDEEITELTGLSLAYVRLA 1082
            YP+D EI + TGLSLA +R A
Sbjct: 425  YPDDNEIAKFTGLSLAKIRSA 445


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  268 bits (686), Expect = 2e-69
 Identities = 141/321 (43%), Positives = 203/321 (63%), Gaps = 4/321 (1%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIRSSNLVNKHL 308
            +EN+D +E++   ++M+RLE+DI+  L RLGA+KLF  C S+ + T T     +   +H+
Sbjct: 181  LENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHI 240

Query: 309  DAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDE---LFS 479
                     D+  D +VV S                        +P+++  K       S
Sbjct: 241  RECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVS 300

Query: 480  LRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAE 659
              KR L +       +KR + AKNE+EMS GVK +ANLE++   LEE++G   S + WAE
Sbjct: 301  TVKRTLNS------RRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAE 354

Query: 660  AAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGT 839
            AAG+++K L+ +LQFGWYCRD+L+RST SLV+++A+NYRGMG+AF+D++QAG +GVL G 
Sbjct: 355  AAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGA 414

Query: 840  ERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGK 1019
            ER+D  KGYRFSTYVQYWIRKS+  ++A H+R VK+P  +   I QIQK ++  + S G+
Sbjct: 415  ERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGR 474

Query: 1020 YPNDEEITELTGLSLAYVRLA 1082
            YP+D EI + TGLSLA +R A
Sbjct: 475  YPDDNEIAKFTGLSLAKIRSA 495


>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
          Length = 848

 Score =  260 bits (664), Expect = 8e-67
 Identities = 139/319 (43%), Positives = 202/319 (63%), Gaps = 1/319 (0%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            MEN+D +E+    +D++ LE++IL  L R GA+KLF TC S+ +  + I   + V  +  
Sbjct: 419  MENLDVLEETFADSDVLTLEREILLQLGRFGALKLFNTCLSRTLKASNILDLSDVPANSG 478

Query: 312  AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRKR 491
                 L  D +KDNIVV S                        +P+ + H       +K 
Sbjct: 479  DCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALENPTIISTQLMPSNTLHG----RFQKP 534

Query: 492  GLGNFAGLSGSKKREV-IAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAEAAG 668
             + +   +S S+ R + IA+NE+EMS GVK +ANLE++   LEE+ G+  S + WAEAAG
Sbjct: 535  KVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLEEETGRAASLSCWAEAAG 594

Query: 669  LNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERY 848
            +++K L+  L+FGWYCRD+L+RSTRSLV++ A+NYRG+GIA +DLIQAG +GVL G ER+
Sbjct: 595  VSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLGVLQGAERF 654

Query: 849  DIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPN 1028
            D  +GYRFSTYVQ+WIRKS+  ++A H+R ++VP  +   I QIQK ++    S GKYP+
Sbjct: 655  DHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPD 714

Query: 1029 DEEITELTGLSLAYVRLAS 1085
            ++ I + TGLSLA +R A+
Sbjct: 715  EDAIAKFTGLSLAKIRSAN 733


>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  254 bits (649), Expect = 4e-65
 Identities = 137/320 (42%), Positives = 203/320 (63%), Gaps = 2/320 (0%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIRSSNLVNKHL 308
            ++N++ +E+    +D+++LEK+IL  L RLGA+KLF  C S+ + T + +  S++    +
Sbjct: 127  LQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSFLDLSDIPTVPV 186

Query: 309  DAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTE-SGHKDELFSLR 485
            +    E + D     I+V S                      L   T   G K    S  
Sbjct: 187  EEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPKTIWKGLKKPTLSSG 246

Query: 486  KRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAEAA 665
            KR   N+       +R  I+KNE+EMS+GVK +A+LE++ + LE++ GK  +   WAEAA
Sbjct: 247  KRA-SNYRS-----RRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATLRCWAEAA 300

Query: 666  GLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTER 845
            G+++K L   L+FGWYC+D+LIRSTRSLV+++A+NYRG+G+A DDL+QAG +G+L G ER
Sbjct: 301  GVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGAER 360

Query: 846  YDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYP 1025
            +D  +GYRFSTYVQYWIRKS+  ++A H+R V++P  +   INQIQK ++  + S  KYP
Sbjct: 361  FDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYP 420

Query: 1026 NDEEITELTGLSLAYVRLAS 1085
            +DEEI ++TGLSLA +R AS
Sbjct: 421  DDEEIAKITGLSLARIRSAS 440


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
          Length = 555

 Score =  252 bits (644), Expect = 2e-64
 Identities = 140/327 (42%), Positives = 205/327 (62%), Gaps = 9/327 (2%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            M+N+D +E++   ++M RLE+DIL  L +LGA++ F TC S+         S+   K LD
Sbjct: 126  MKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRT------HHSSTFPKVLD 179

Query: 312  AYPFELRFDEKKDN--------IVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKD 467
              P EL  + +KD+        +VV S                      +Q  T++  +D
Sbjct: 180  V-PRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQED 238

Query: 468  ELFSLRKRGLGNFAGLSGSK-KREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSF 644
                L++    +      S+ KR+ IAKNE+EMS GVK +A LE++   LEE+ G+  +F
Sbjct: 239  ----LQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATF 294

Query: 645  TRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVG 824
            + WAEAAG+ QK L+ RL FGWYCRD+L++STRSLV+++A+NYRG+G+AF+DLIQAG +G
Sbjct: 295  SSWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMG 354

Query: 825  VLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFH 1004
            VL G  R+D  +GY+FSTYVQYWIRKS+  ++A H+R V++P  +  +INQI K ++   
Sbjct: 355  VLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLS 414

Query: 1005 TSEGKYPNDEEITELTGLSLAYVRLAS 1085
             S GK+P D+EI + TGLS A + +AS
Sbjct: 415  RSHGKFPADDEIAKFTGLSTARIAMAS 441


>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
            gi|548857444|gb|ERN15250.1| hypothetical protein
            AMTR_s00056p00209700 [Amborella trichopoda]
          Length = 529

 Score =  252 bits (644), Expect = 2e-64
 Identities = 141/325 (43%), Positives = 201/325 (61%), Gaps = 8/325 (2%)
 Frame = +3

Query: 135  ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTET-IIRSSNLVNKHLD 311
            EN+++IE +IV +   RLE++IL H+ RLGA+KLF    S+ + +  I+  +    +H  
Sbjct: 102  ENLEKIEGIIVDSGNARLEREILLHIERLGALKLFHAFLSRTLKDPKILDVTGTCPEHAM 161

Query: 312  AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRKR 491
              P     DE+ D  +V S                       ++  E      L  ++K 
Sbjct: 162  VQPM----DEQADGYIVSSGKKVERKAQRERALK--------KVTDEPIVCSSLKRVKKS 209

Query: 492  GLGNFAGLS------GSKKREVI-AKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTR 650
                 A L+       SK R  + A++E EMS GV+E+A LEK+  NLEE++G+  SF+ 
Sbjct: 210  TKSINAALTHKGHPGNSKSRSHLRAQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSV 269

Query: 651  WAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVL 830
            WAEAAG+N+K L+ +L FGW+CRDKL+RSTR LV+++AK+YRG GI F+DL+QAG +GVL
Sbjct: 270  WAEAAGINEKVLKQQLHFGWFCRDKLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVL 329

Query: 831  NGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTS 1010
             G ER+D  +GYRFSTYVQYWIRKS+ A++A HSR V++P+ +  ++NQ  K KR  H  
Sbjct: 330  QGAERFDHTRGYRFSTYVQYWIRKSLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQM 389

Query: 1011 EGKYPNDEEITELTGLSLAYVRLAS 1085
             G++P + EI E TGLSL  VRLA+
Sbjct: 390  HGRHPREVEIAEFTGLSLVNVRLAN 414


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  252 bits (643), Expect = 2e-64
 Identities = 138/325 (42%), Positives = 203/325 (62%), Gaps = 7/325 (2%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            MEN+D +E     +D +RLE++IL  L +LGA+KLF +  S+     I+++SN+++   D
Sbjct: 107  MENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSR-----IVKTSNVLDLS-D 160

Query: 312  AYPFELRFDEKKD----NIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTES---GHKDE 470
             +  E + D+ +D     I+V S                      L +P+E+   G K  
Sbjct: 161  VHTEEQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEALQEGLKQP 220

Query: 471  LFSLRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTR 650
                 +R L +        +R +IA+NE+EMS GV+ +ANLE++   LE++ GK      
Sbjct: 221  TIFSAERALNSRG------RRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNC 274

Query: 651  WAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVL 830
            WA+AAG++++ L+  L FGWYCR++LI+STR LV+F+A+NYRG+GI F DL+QAG VGVL
Sbjct: 275  WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334

Query: 831  NGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTS 1010
             G ER+D  +GY+FSTYVQYWIRKSI  M+A H+R +K+P ++   I++IQK ++    S
Sbjct: 335  QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394

Query: 1011 EGKYPNDEEITELTGLSLAYVRLAS 1085
             GKYP D EI + TGLSLA +R AS
Sbjct: 395  HGKYPEDIEIAKYTGLSLAEIRSAS 419


>ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553990|gb|ESR64004.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 442

 Score =  251 bits (642), Expect = 3e-64
 Identities = 138/325 (42%), Positives = 204/325 (62%), Gaps = 7/325 (2%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            MEN+D +E     +D +RLE++IL  L +LGA+KLF +  S+     I+++SN+++   D
Sbjct: 107  MENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSR-----IVKTSNVLDLS-D 160

Query: 312  AYPFELRFDEKKD----NIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTES---GHKDE 470
             +  E + ++ +D     I+V S                      L +P+E+   G K  
Sbjct: 161  VHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQP 220

Query: 471  LFSLRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTR 650
                 +R L +        +R +IA+NE+EMS GV+ +ANLE++   LE++ GK  S   
Sbjct: 221  TIFSPERALNSRG------RRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC 274

Query: 651  WAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVL 830
            WA+AAG++++ L+  L FGWYCR++LI+STR LV+F+A+NYRG+GI F DL+QAG VGVL
Sbjct: 275  WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334

Query: 831  NGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTS 1010
             G ER+D  +GY+FSTYVQYWIRKSI  M+A H+R +K+P ++   I++IQK ++    S
Sbjct: 335  QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394

Query: 1011 EGKYPNDEEITELTGLSLAYVRLAS 1085
             GKYP D EI + TGLSLA +R AS
Sbjct: 395  HGKYPEDIEIAKYTGLSLAEIRSAS 419


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  251 bits (642), Expect = 3e-64
 Identities = 138/325 (42%), Positives = 204/325 (62%), Gaps = 7/325 (2%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            MEN+D +E     +D +RLE++IL  L +LGA+KLF +  S+     I+++SN+++   D
Sbjct: 107  MENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSR-----IVKTSNVLDLS-D 160

Query: 312  AYPFELRFDEKKD----NIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTES---GHKDE 470
             +  E + ++ +D     I+V S                      L +P+E+   G K  
Sbjct: 161  VHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQP 220

Query: 471  LFSLRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTR 650
                 +R L +        +R +IA+NE+EMS GV+ +ANLE++   LE++ GK  S   
Sbjct: 221  TIFSPERALNSRG------RRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC 274

Query: 651  WAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVL 830
            WA+AAG++++ L+  L FGWYCR++LI+STR LV+F+A+NYRG+GI F DL+QAG VGVL
Sbjct: 275  WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334

Query: 831  NGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTS 1010
             G ER+D  +GY+FSTYVQYWIRKSI  M+A H+R +K+P ++   I++IQK ++    S
Sbjct: 335  QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394

Query: 1011 EGKYPNDEEITELTGLSLAYVRLAS 1085
             GKYP D EI + TGLSLA +R AS
Sbjct: 395  HGKYPEDIEIAKYTGLSLAEIRSAS 419


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
            lycopersicum]
          Length = 551

 Score =  249 bits (636), Expect = 1e-63
 Identities = 141/344 (40%), Positives = 205/344 (59%), Gaps = 26/344 (7%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            M+N+D +E++   ++M RLE+DIL  L +LGA++ F TC S+         S+   K LD
Sbjct: 122  MKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRT------HHSSSFPKVLD 175

Query: 312  AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRKR 491
              P EL  + +KD++V ++                       ++   S  K E  S RKR
Sbjct: 176  V-PRELIKEVEKDDLVGNAMD---------------------KVVVRSRKKQERMSRRKR 213

Query: 492  GLGNFAGL--------------------SGSK------KREVIAKNESEMSMGVKEMANL 593
               N   +                    SG +      KR+ IAKNE+EMS GVK +A L
Sbjct: 214  ASRNANDIITVQPHTKNIQEDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQL 273

Query: 594  EKLCKNLEEDMGKPPSFTRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNY 773
            E++   LEE+ G+  +F+ WA+AAG+ QK L+  L FGWYCRD+L++STRSLV+++A+NY
Sbjct: 274  ERIRSILEEETGQVATFSSWAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNY 333

Query: 774  RGMGIAFDDLIQAGYVGVLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPV 953
            RG+G+AF+DLIQAG +GVL G  R+D  +GY+FSTYVQYWIRKS+  ++A H+R V++P 
Sbjct: 334  RGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPF 393

Query: 954  RMESMINQIQKVKRNFHTSEGKYPNDEEITELTGLSLAYVRLAS 1085
             +  +INQI K ++    S GK+P D+EI + TGLS A + +AS
Sbjct: 394  TICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMAS 437


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
            subsp. vesca]
          Length = 545

 Score =  248 bits (634), Expect = 2e-63
 Identities = 132/318 (41%), Positives = 199/318 (62%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            ++N++ +E+    + + +LEK+IL  L RLGA+KLF  C S+    T+  SS L    + 
Sbjct: 123  LQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSR----TLKTSSFLDLSDIP 178

Query: 312  AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRKR 491
              P E    E+K+ +                          ++   E   K    S+R+ 
Sbjct: 179  TEPIEKHKTERKNIVRSGKKEEQKSRKRTSYDSKKFSGTLPVKQMREGFKKPNPSSVRRA 238

Query: 492  GLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAEAAGL 671
                    +   +R ++AKNE+EMS+GVK +A+LE+L   LE++ GK P+   WAEAAG+
Sbjct: 239  S-------NSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGV 291

Query: 672  NQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERYD 851
            ++K L+ +L FGWYC+D+L+RSTRSLV+++A+NYRG+G+A DDL+QAG +G+L G ER+D
Sbjct: 292  DEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFD 351

Query: 852  IEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPND 1031
              +GYRFSTYVQYWIRKS+  ++A H+R +K+P  +   IN+IQK ++  + S  KYP+D
Sbjct: 352  PSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDD 411

Query: 1032 EEITELTGLSLAYVRLAS 1085
            EEI ++TGLSLA +  AS
Sbjct: 412  EEIAKITGLSLAKISSAS 429


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  245 bits (625), Expect = 3e-62
 Identities = 130/325 (40%), Positives = 201/325 (61%), Gaps = 8/325 (2%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            ++N+D +E L+   D ++LE+DIL  L RLGA++ F  C S+      +++SN+++  L 
Sbjct: 130  LDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRT-----LQTSNVLD--LS 182

Query: 312  AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRKR 491
            A P E   + K D ++                          +  +++G K    SL  +
Sbjct: 183  AVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRE----RAASDNGKKTTSLSLPSK 238

Query: 492  GLGNFAGL--------SGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFT 647
             + N            S S +R +IA+NE++M+ GVK  ++LE++   LEE+ G+  S +
Sbjct: 239  TVQNNLPKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLS 298

Query: 648  RWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGV 827
             WAEA GL++K L+ +LQFGWYCRD+LI++T SLV+++A+NYRGMGIA +DLIQAG +G+
Sbjct: 299  CWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGL 358

Query: 828  LNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHT 1007
            L G ER+D  +GYRFSTYVQYWIRKS+L ++  H+R +++P  +   IN+IQK ++    
Sbjct: 359  LQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSN 418

Query: 1008 SEGKYPNDEEITELTGLSLAYVRLA 1082
            S G+YP+D E+ + TGLSLA +  A
Sbjct: 419  SHGRYPDDWEVAKFTGLSLAKIESA 443


>emb|CAB83107.1| sigma factor 3 [Sinapis alba]
          Length = 567

 Score =  241 bits (616), Expect = 3e-61
 Identities = 140/328 (42%), Positives = 200/328 (60%), Gaps = 11/328 (3%)
 Frame = +3

Query: 135  ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDA 314
            +N+  +E   V  D +R+E+DI+  +R+LGA +LF TC S++      R S+  +   D 
Sbjct: 151  KNLLALEQTFVALDSLRMERDIMLQMRKLGAAELFNTCLSRS------RVSSATSCLPDT 204

Query: 315  YPFELRFDEKKDN-IVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRKR 491
               EL  D  ++    VHS                      L+    +G+ D+  S    
Sbjct: 205  GTPELVDDTTQEQKTFVHSTRK-------------------LRKKARTGNGDQGSSTISS 245

Query: 492  GLGNFAGLSGS---------KKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSF 644
                + G+            KKRE I++NE+EMS GVK +A++E++   LEE+ GK  S 
Sbjct: 246  RT-TWEGIDVPRVRKPSKYRKKRERISRNEAEMSQGVKIVADMERIRTKLEEETGKVASM 304

Query: 645  TRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVG 824
            + WAEAAG+NQK L   L FGWYCRD+L++STRSLV+F+A+NYRG+GIA +DLIQAGYVG
Sbjct: 305  SCWAEAAGMNQKLLMHNLHFGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVG 364

Query: 825  VLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFH 1004
            VL G ER+D  +GY+FSTYV+YWIRKS+  M++ H+R V +P  +   ++QIQK ++   
Sbjct: 365  VLQGAERFDHTRGYKFSTYVRYWIRKSMSTMVSRHARGVHIPASIIRTMSQIQKARKTLK 424

Query: 1005 TSEG-KYPNDEEITELTGLSLAYVRLAS 1085
            TS+G KYP DEEI++LTG SL  +R A+
Sbjct: 425  TSQGIKYPADEEISKLTGYSLKKIRAAN 452


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  237 bits (605), Expect = 5e-60
 Identities = 132/329 (40%), Positives = 197/329 (59%), Gaps = 11/329 (3%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIRSSNLVNKHL 308
            +EN++ +E     +D  +LE+DIL  L +LGA+KLF TC ++ + T  ++  S++  + +
Sbjct: 129  LENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEII 188

Query: 309  DAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRK 488
                        +  +VVH+                       +     GHK     L  
Sbjct: 189  GECNINGTSINNQIKVVVHTAKKEERKSRRE------------RASARKGHKSPSLPLPS 236

Query: 489  RGLGN-------FAGLSGSK---KREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPP 638
            R + +        +G   SK   +R +IA+NE+EM+ G+K +A+LEK+   LEE+  +  
Sbjct: 237  RPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVV 296

Query: 639  SFTRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGY 818
            S + WAEAAGL+ K L+ +L FGWYCRD+LI+STRSLV++ A+NYRG GIA +DL+QAG 
Sbjct: 297  SLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGN 356

Query: 819  VGVLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRN 998
            +GVL G ER+D  +GYRFSTYVQYWIRKS+  +++  +R +++P  +   I QIQK ++ 
Sbjct: 357  LGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKA 416

Query: 999  FHTSEGKYPNDEEITELTGLSLAYVRLAS 1085
              TS GKYP+D+EI + TGLSLA +  AS
Sbjct: 417  LTTSNGKYPDDDEIAKYTGLSLAKIESAS 445


>gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlisea aurea]
          Length = 463

 Score =  236 bits (603), Expect = 9e-60
 Identities = 127/318 (39%), Positives = 192/318 (60%), Gaps = 1/318 (0%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            M+N+D +E++   +  +RLE DIL  L+RLGA+ LF +C S     T +RS+   +    
Sbjct: 46   MKNLDTLENMFSDSYAVRLEDDILEQLQRLGAIHLFNSCLS-----TTLRSAETFDSSSH 100

Query: 312  AYPFELR-FDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRK 488
            A    LR  D     ++V S                      LQ  +    K+  F   K
Sbjct: 101  APADVLRKIDSANCKVIVQSGKKELRKLRRKRAVDFEAGNLSLQFTSRDVRKN--FRTPK 158

Query: 489  RGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAEAAG 668
                     S  KK+  I ++ES+M+ G K +  LE++ K +E++ G+ PSF+RWAEAA 
Sbjct: 159  TDSARAVARSRYKKQR-ITQSESDMAAGFKLVTELERIRKKVEDESGETPSFSRWAEAAR 217

Query: 669  LNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERY 848
            +  K L+ RL +GW+CRD+L++S+RSLV+F+A+NY G+GIAF+DLIQAG + VL G ER+
Sbjct: 218  IESKELKRRLNYGWHCRDQLLKSSRSLVVFIARNYWGLGIAFEDLIQAGNMAVLRGAERF 277

Query: 849  DIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPN 1028
            D  +GY+FSTYVQYWIRKS+  ++A+HSR +++P  M  +INQ+Q  ++    + G+ P+
Sbjct: 278  DQSRGYKFSTYVQYWIRKSMSMLVANHSRGIRIPGTMNKVINQVQNARKQLCAATGRTPS 337

Query: 1029 DEEITELTGLSLAYVRLA 1082
            D E+ +LTG+SL  +R A
Sbjct: 338  DLEVAKLTGISLERIRSA 355


>ref|XP_006601060.1| PREDICTED: RNA polymerase sigma factor sigC isoform X3 [Glycine max]
          Length = 459

 Score =  236 bits (602), Expect = 1e-59
 Identities = 134/322 (41%), Positives = 199/322 (61%), Gaps = 4/322 (1%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            MEN+  +E+  V ++ +RLEK I+  L +LGA++LF  C S+++       ++LV+ + D
Sbjct: 135  MENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSL------GTSLVSNYAD 188

Query: 312  AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELF----S 479
                  + D+ KD +VV S+                      Q  T   ++++L     S
Sbjct: 189  ------KVDDYKDKVVVQSSKKKENKTRRKREFVSTAVSS--QSLTLKANQEDLLGFSAS 240

Query: 480  LRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAE 659
            L KR            KR ++AK E+EMS GVK +A LEK+   +EED  +  S + WAE
Sbjct: 241  LVKRAPNT------KNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAE 294

Query: 660  AAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGT 839
            A+G+++K L+  L  G+YC+D+LIRSTRSLV+++A+ YRGMGIA DDL+QAGYVGVL G 
Sbjct: 295  ASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGA 354

Query: 840  ERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGK 1019
            ER+D  +GY+FSTYVQYWIRKSIL ++A ++R + +P  +   INQIQK ++   ++  K
Sbjct: 355  ERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKK 414

Query: 1020 YPNDEEITELTGLSLAYVRLAS 1085
             P+D EI ++TGLSL  ++ AS
Sbjct: 415  CPDDYEIAKMTGLSLDKIKSAS 436


>ref|XP_006601059.1| PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Glycine max]
          Length = 476

 Score =  236 bits (602), Expect = 1e-59
 Identities = 134/322 (41%), Positives = 199/322 (61%), Gaps = 4/322 (1%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            MEN+  +E+  V ++ +RLEK I+  L +LGA++LF  C S+++       ++LV+ + D
Sbjct: 135  MENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSL------GTSLVSNYAD 188

Query: 312  AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELF----S 479
                  + D+ KD +VV S+                      Q  T   ++++L     S
Sbjct: 189  ------KVDDYKDKVVVQSSKKKENKTRRKREFVSTAVSS--QSLTLKANQEDLLGFSAS 240

Query: 480  LRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAE 659
            L KR            KR ++AK E+EMS GVK +A LEK+   +EED  +  S + WAE
Sbjct: 241  LVKRAPNT------KNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAE 294

Query: 660  AAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGT 839
            A+G+++K L+  L  G+YC+D+LIRSTRSLV+++A+ YRGMGIA DDL+QAGYVGVL G 
Sbjct: 295  ASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGA 354

Query: 840  ERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGK 1019
            ER+D  +GY+FSTYVQYWIRKSIL ++A ++R + +P  +   INQIQK ++   ++  K
Sbjct: 355  ERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKK 414

Query: 1020 YPNDEEITELTGLSLAYVRLAS 1085
             P+D EI ++TGLSL  ++ AS
Sbjct: 415  CPDDYEIAKMTGLSLDKIKSAS 436


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
          Length = 551

 Score =  236 bits (602), Expect = 1e-59
 Identities = 134/322 (41%), Positives = 199/322 (61%), Gaps = 4/322 (1%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 311
            MEN+  +E+  V ++ +RLEK I+  L +LGA++LF  C S+++       ++LV+ + D
Sbjct: 135  MENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSL------GTSLVSNYAD 188

Query: 312  AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELF----S 479
                  + D+ KD +VV S+                      Q  T   ++++L     S
Sbjct: 189  ------KVDDYKDKVVVQSSKKKENKTRRKREFVSTAVSS--QSLTLKANQEDLLGFSAS 240

Query: 480  LRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAE 659
            L KR            KR ++AK E+EMS GVK +A LEK+   +EED  +  S + WAE
Sbjct: 241  LVKRAPNT------KNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAE 294

Query: 660  AAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGT 839
            A+G+++K L+  L  G+YC+D+LIRSTRSLV+++A+ YRGMGIA DDL+QAGYVGVL G 
Sbjct: 295  ASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGA 354

Query: 840  ERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGK 1019
            ER+D  +GY+FSTYVQYWIRKSIL ++A ++R + +P  +   INQIQK ++   ++  K
Sbjct: 355  ERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKK 414

Query: 1020 YPNDEEITELTGLSLAYVRLAS 1085
             P+D EI ++TGLSL  ++ AS
Sbjct: 415  CPDDYEIAKMTGLSLDKIKSAS 436


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
            gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor
            [Medicago truncatula]
          Length = 549

 Score =  235 bits (600), Expect = 2e-59
 Identities = 132/320 (41%), Positives = 191/320 (59%), Gaps = 2/320 (0%)
 Frame = +3

Query: 132  MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIRSSNLVNKHL 308
            MEN+  +E+    ++ +RLEK+I+  L +LGA++LF  C + +  T  I   ++ V + +
Sbjct: 125  MENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCTHKVLEQV 184

Query: 309  DAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRK 488
            +      + D+    ++VHS+                     L  P +   +D L   R 
Sbjct: 185  EENKRNHKVDDYTGKVIVHSSKRKENRRRKRGSVSIAPSSRSL--PLDDNQEDPL---RS 239

Query: 489  RGLGNFAGLSGSK-KREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWAEAA 665
                     S +K KR VIA+ E EMS GVK +A LEK+   +EED  +  S + WAE +
Sbjct: 240  SPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETS 299

Query: 666  GLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTER 845
            G+++K L+ +L  G+YCRD+LIRSTRSLV++ A+ YRGMGIA +DL+Q GY+GVL G ER
Sbjct: 300  GVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAER 359

Query: 846  YDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYP 1025
            +D  KGYRFSTYVQYWIRKS+  M+A ++R + VP  M   I+QIQK ++    +  KYP
Sbjct: 360  FDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYP 419

Query: 1026 NDEEITELTGLSLAYVRLAS 1085
            ND EI ++TGLSL  +  AS
Sbjct: 420  NDLEIAKMTGLSLDKIMSAS 439


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  235 bits (600), Expect = 2e-59
 Identities = 131/324 (40%), Positives = 192/324 (59%), Gaps = 7/324 (2%)
 Frame = +3

Query: 135  ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDA 314
            +N+  +E+  V  D  R+E+DI+  + +LGA  LF TC S++   ++    +   + +  
Sbjct: 150  KNLLALEETFVALDSARMERDIMLQMGKLGAADLFKTCLSRSRGSSVASCLSDTTELVGT 209

Query: 315  YPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXXXXXXXXLQIPTESGHKDELFSLRKRG 494
             P +  F   +  +   +                        +  E+G +  L    +  
Sbjct: 210  TPNQQVFVSSRRKLKKKARRST--------------------VTAENGDQGSLPMGLRTT 249

Query: 495  LGNF------AGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSFTRWA 656
              N             KKRE I+KNE+EMS GVK +A++E++   LEE+ GK  S + WA
Sbjct: 250  WNNIDVPRVRRPPKYRKKRERISKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWA 309

Query: 657  EAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNG 836
            EAAG+N+K L   L +GWYCRD+L++STRSLV+F+A+NYRG+GIA +DLIQAGYVGVL G
Sbjct: 310  EAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQG 369

Query: 837  TERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEG 1016
             ER+D  +GY+FSTYVQYWIRKS+  M++ H+R V +P  +   INQIQK ++   TS G
Sbjct: 370  AERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHG 429

Query: 1017 -KYPNDEEITELTGLSLAYVRLAS 1085
             KYP DE+I++LT LS+  +R A+
Sbjct: 430  IKYPADEDISKLTSLSVKKIRAAN 453