BLASTX nr result
ID: Zingiber24_contig00031907
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00031907
(234 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACJ63312.1| RNA polymerase I large subunit [Ceratophyllum dem... 100 3e-19
gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza... 96 5e-18
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub... 96 7e-18
gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza... 96 7e-18
gb|ACJ63315.1| RNA polymerase I large subunit [Liriodendron tuli... 92 9e-17
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz... 90 3e-16
gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japo... 90 3e-16
gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indi... 90 3e-16
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 89 6e-16
gb|ACJ63313.1| RNA polymerase I large subunit [Drimys winteri] 88 1e-15
ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [A... 88 1e-15
gb|AAS55440.1| RNA polymerase I largest subunit [Amborella trich... 87 2e-15
gb|AAS55438.1| RNA polymerase I largest subunit [Welwitschia mir... 86 5e-15
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 86 7e-15
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub... 86 7e-15
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera] 86 7e-15
ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [S... 85 9e-15
gb|AAS55441.1| RNA polymerase I largest subunit [Nymphaea lotus] 82 1e-13
gb|ACJ63316.1| RNA polymerase I large subunit [Nymphaea odorata] 82 1e-13
ref|XP_002963596.1| hypothetical protein SELMODRAFT_438401 [Sela... 80 3e-13
>gb|ACJ63312.1| RNA polymerase I large subunit [Ceratophyllum demersum]
Length = 538
Score = 99.8 bits (247), Expect = 3e-19
Identities = 48/74 (64%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYA--QNRYGEKASLSWSENEIQPLPPAI 176
I+SAVLLTK+DTFLTREEYHQL+Y SC+ + + Q G+K S SE+EI+P+ PAI
Sbjct: 40 IISAVLLTKIDTFLTREEYHQLLYSSCVSANAQSSFQGNSGKKISAIISEDEIEPILPAI 99
Query: 177 WKPIPLWTGKQVIT 218
WKP+PLWTGKQVIT
Sbjct: 100 WKPVPLWTGKQVIT 113
>gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
Length = 1830
Score = 95.9 bits (237), Expect = 5e-18
Identities = 43/72 (59%), Positives = 58/72 (80%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWK 182
IV AVLLTKLDTFL+REEY+QL+Y SC+ ++ ++G+K S+ ++ ++P+PPAIWK
Sbjct: 636 IVGAVLLTKLDTFLSREEYNQLVYGSCVLSSARRSGQFGKKISIIMDDDVLEPVPPAIWK 695
Query: 183 PIPLWTGKQVIT 218
P PLWTGKQVIT
Sbjct: 696 PKPLWTGKQVIT 707
>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
brachyantha]
Length = 1755
Score = 95.5 bits (236), Expect = 7e-18
Identities = 43/72 (59%), Positives = 58/72 (80%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWK 182
IV AVLLTKLDTFL+REEY+QL+Y SC+ ++ ++G+K S+ ++ ++P+PPAIWK
Sbjct: 637 IVGAVLLTKLDTFLSREEYNQLVYGSCVFSSTRRSAKFGKKISIIMDDDALEPVPPAIWK 696
Query: 183 PIPLWTGKQVIT 218
P PLWTGKQVIT
Sbjct: 697 PKPLWTGKQVIT 708
>gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
Length = 1138
Score = 95.5 bits (236), Expect = 7e-18
Identities = 43/72 (59%), Positives = 58/72 (80%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWK 182
IV AVLLTKLDTFL+REEY+QL+Y SC+ ++ ++G+K S+ ++ ++P+PPAIWK
Sbjct: 637 IVGAVLLTKLDTFLSREEYNQLVYGSCVFSSTRRSAKFGKKISIIMDDDALEPVPPAIWK 696
Query: 183 PIPLWTGKQVIT 218
P PLWTGKQVIT
Sbjct: 697 PKPLWTGKQVIT 708
>gb|ACJ63315.1| RNA polymerase I large subunit [Liriodendron tulipifera]
Length = 558
Score = 91.7 bits (226), Expect = 9e-17
Identities = 48/75 (64%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIY---VSCMPPTSYAQNRYGEKASLSWSENEIQPLPPA 173
IVSAVLLTK DTFLTR+EYH L+Y VS SY ++G+K S++EIQPLPP
Sbjct: 40 IVSAVLLTKKDTFLTRDEYHMLLYASGVSTAASGSYV-GKFGQKVCTLSSDDEIQPLPPV 98
Query: 174 IWKPIPLWTGKQVIT 218
IWKP PLWTGKQVIT
Sbjct: 99 IWKPKPLWTGKQVIT 113
>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
Group]
Length = 1748
Score = 90.1 bits (222), Expect = 3e-16
Identities = 42/72 (58%), Positives = 57/72 (79%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWK 182
I+ AVLLTKLDTFL+REEY+QL+Y S + T + ++G+K S+ ++ ++P+PPAIWK
Sbjct: 645 IIGAVLLTKLDTFLSREEYNQLVYGSVLSSTRRS-GQFGKKISIIMDDDALEPVPPAIWK 703
Query: 183 PIPLWTGKQVIT 218
P PLWTGKQVIT
Sbjct: 704 PKPLWTGKQVIT 715
>gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japonica Group]
Length = 994
Score = 90.1 bits (222), Expect = 3e-16
Identities = 42/72 (58%), Positives = 57/72 (79%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWK 182
I+ AVLLTKLDTFL+REEY+QL+Y S + T + ++G+K S+ ++ ++P+PPAIWK
Sbjct: 427 IIGAVLLTKLDTFLSREEYNQLVYGSVLSSTRRS-GQFGKKISIIMDDDALEPVPPAIWK 485
Query: 183 PIPLWTGKQVIT 218
P PLWTGKQVIT
Sbjct: 486 PKPLWTGKQVIT 497
>gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indica Group]
Length = 1350
Score = 90.1 bits (222), Expect = 3e-16
Identities = 42/72 (58%), Positives = 57/72 (79%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWK 182
I+ AVLLTKLDTFL+REEY+QL+Y S + T + ++G+K S+ ++ ++P+PPAIWK
Sbjct: 714 IIGAVLLTKLDTFLSREEYNQLVYGSVLSSTRRS-GQFGKKISIIMDDDALEPVPPAIWK 772
Query: 183 PIPLWTGKQVIT 218
P PLWTGKQVIT
Sbjct: 773 PKPLWTGKQVIT 784
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus
communis]
Length = 1686
Score = 89.0 bits (219), Expect = 6e-16
Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 3/75 (4%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIY---VSCMPPTSYAQNRYGEKASLSWSENEIQPLPPA 173
IVSAVLLTK DTFL+++E++QL+Y VS + P S+ R G+K S SE+EIQ LPPA
Sbjct: 645 IVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSF-HGRPGQKVLWSRSEDEIQTLPPA 703
Query: 174 IWKPIPLWTGKQVIT 218
IWKP PLWTGKQVIT
Sbjct: 704 IWKPKPLWTGKQVIT 718
>gb|ACJ63313.1| RNA polymerase I large subunit [Drimys winteri]
Length = 539
Score = 88.2 bits (217), Expect = 1e-15
Identities = 45/75 (60%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIY---VSCMPPTSYAQNRYGEKASLSWSENEIQPLPPA 173
I+SAVLLTK DTFLTR+EYHQL+Y V+ P S+ ++G+ S SE++I+P+ PA
Sbjct: 40 IISAVLLTKKDTFLTRDEYHQLLYSSGVTAAAPRSFI-GKFGKTVSTISSEDDIKPVLPA 98
Query: 174 IWKPIPLWTGKQVIT 218
IWKP PLWTGKQVIT
Sbjct: 99 IWKPRPLWTGKQVIT 113
>ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [Amborella trichopoda]
gi|548853779|gb|ERN11762.1| hypothetical protein
AMTR_s00022p00245030 [Amborella trichopoda]
Length = 1600
Score = 87.8 bits (216), Expect = 1e-15
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAI 176
IVSAVLLTK DTFLT+EEYH L+Y +C+ + + +K SL S+ EI+PL PAI
Sbjct: 582 IVSAVLLTKKDTFLTQEEYHHLLYSACVSTVAPDFKHGNLSKKISLVKSDEEIRPLLPAI 641
Query: 177 WKPIPLWTGKQVIT 218
WKP PLWTGKQVI+
Sbjct: 642 WKPKPLWTGKQVIS 655
>gb|AAS55440.1| RNA polymerase I largest subunit [Amborella trichopoda]
Length = 542
Score = 87.4 bits (215), Expect = 2e-15
Identities = 44/74 (59%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAI 176
IVSAVLLTK DTFLT+EEYH L+Y +C+ + + +K SL S+ EI PL PAI
Sbjct: 42 IVSAVLLTKKDTFLTQEEYHHLLYSACVSTVAPDFKHGNLSKKISLVKSDEEISPLLPAI 101
Query: 177 WKPIPLWTGKQVIT 218
WKP PLWTGKQVI+
Sbjct: 102 WKPKPLWTGKQVIS 115
>gb|AAS55438.1| RNA polymerase I largest subunit [Welwitschia mirabilis]
Length = 543
Score = 85.9 bits (211), Expect = 5e-15
Identities = 43/74 (58%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAI 176
IVSA LLTK DTFLTREEY L+Y +C+ +S Y + K ++ E+ PLPPAI
Sbjct: 42 IVSATLLTKKDTFLTREEYQNLVYTACVSSSSPFYRYAKDCPKVTIEKDESSFVPLPPAI 101
Query: 177 WKPIPLWTGKQVIT 218
WKP PLWTGKQVIT
Sbjct: 102 WKPNPLWTGKQVIT 115
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 85.5 bits (210), Expect = 7e-15
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQ-NRYGEKASLSWSENEIQPLPPAIW 179
IVSAVLLTK DTFLTRE+Y+QL+Y S + S + + G+K S+ SE+E+QPL PAIW
Sbjct: 645 IVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIW 704
Query: 180 KPIPLWTGKQVIT 218
KP PLW+GKQVIT
Sbjct: 705 KPEPLWSGKQVIT 717
>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 85.5 bits (210), Expect = 7e-15
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQ-NRYGEKASLSWSENEIQPLPPAIW 179
IVSAVLLTK DTFLTRE+Y+QL+Y S + S + + G+K S+ SE+E+QPL PAIW
Sbjct: 716 IVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIW 775
Query: 180 KPIPLWTGKQVIT 218
KP PLW+GKQVIT
Sbjct: 776 KPEPLWSGKQVIT 788
>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
Length = 1350
Score = 85.5 bits (210), Expect = 7e-15
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQ-NRYGEKASLSWSENEIQPLPPAIW 179
IVSAVLLTK DTFLTRE+Y+QL+Y S + S + + G+K S+ SE+E+QPL PAIW
Sbjct: 782 IVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIW 841
Query: 180 KPIPLWTGKQVIT 218
KP PLW+GKQVIT
Sbjct: 842 KPEPLWSGKQVIT 854
>ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
gi|241945458|gb|EES18603.1| hypothetical protein
SORBIDRAFT_09g027223 [Sorghum bicolor]
Length = 799
Score = 85.1 bits (209), Expect = 9e-15
Identities = 41/72 (56%), Positives = 50/72 (69%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWK 182
I+ AVLLTK DTFLTREEY QL++ SCMP ++ G+K S ++ + PAIWK
Sbjct: 639 IIGAVLLTKRDTFLTREEYSQLVFGSCMPSSNRGSRHPGKKVSAIEDYGTLELVRPAIWK 698
Query: 183 PIPLWTGKQVIT 218
P PLWTGKQVIT
Sbjct: 699 PKPLWTGKQVIT 710
>gb|AAS55441.1| RNA polymerase I largest subunit [Nymphaea lotus]
Length = 544
Score = 81.6 bits (200), Expect = 1e-13
Identities = 43/75 (57%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGE---KASLSWSENEIQPLPPA 173
I S+VLLTK DTFLTREEYH L+Y +C A GE K + SE +I P+ PA
Sbjct: 42 IASSVLLTKKDTFLTREEYHHLLYSAC------AMVNLGESSKKCCMIKSEGDIHPILPA 95
Query: 174 IWKPIPLWTGKQVIT 218
IWKP PLWTGKQ+IT
Sbjct: 96 IWKPYPLWTGKQIIT 110
>gb|ACJ63316.1| RNA polymerase I large subunit [Nymphaea odorata]
Length = 542
Score = 81.6 bits (200), Expect = 1e-13
Identities = 43/75 (57%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGE---KASLSWSENEIQPLPPA 173
I S+VLLTK DTFLTREEYH L+Y +C A GE K + SE +I P+ PA
Sbjct: 40 IASSVLLTKKDTFLTREEYHHLLYSAC------AMVNLGESSKKCCMIKSEGDIHPILPA 93
Query: 174 IWKPIPLWTGKQVIT 218
IWKP PLWTGKQ+IT
Sbjct: 94 IWKPYPLWTGKQIIT 108
>ref|XP_002963596.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
gi|300168864|gb|EFJ35467.1| hypothetical protein
SELMODRAFT_438401 [Selaginella moellendorffii]
Length = 1588
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 IVSAVLLTKLDTFLTREEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENE--IQPLPPAI 176
I+SA LLTK DTFLT+EEYHQL+Y +C+P + + + ++ +N I+ +PPAI
Sbjct: 631 IISATLLTKKDTFLTKEEYHQLVYSACVPMPTLESGSFSKGRNVKTLDNHPAIETVPPAI 690
Query: 177 WKPIPLWTGKQVIT 218
WKP LW+GKQV+T
Sbjct: 691 WKPRCLWSGKQVLT 704