BLASTX nr result
ID: Zingiber24_contig00031718
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00031718
(348 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632859.1| PREDICTED: pentatricopeptide repeat-containi... 86 7e-15
gb|EXB74541.1| hypothetical protein L484_026238 [Morus notabilis] 75 1e-11
ref|XP_004305281.1| PREDICTED: uncharacterized protein LOC101315... 68 1e-09
gb|EMJ17141.1| hypothetical protein PRUPE_ppa011224mg [Prunus pe... 68 1e-09
ref|XP_004141838.1| PREDICTED: pentatricopeptide repeat-containi... 67 2e-09
ref|XP_004968266.1| PREDICTED: pentatricopeptide repeat-containi... 66 4e-09
ref|XP_006850605.1| hypothetical protein AMTR_s00034p00130400 [A... 65 7e-09
gb|EOY26848.1| Emb:CAB51178.1, putative [Theobroma cacao] 65 1e-08
gb|ACN40805.1| unknown [Picea sitchensis] 65 1e-08
ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group] g... 62 8e-08
gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indi... 62 8e-08
gb|AAS55478.1| Tha8 [Zea mays] 62 1e-07
ref|XP_004235686.1| PREDICTED: uncharacterized protein LOC101267... 61 1e-07
ref|NP_001105250.1| thylakoid assembly8 [Zea mays] gi|45183621|g... 61 1e-07
ref|XP_003565206.1| PREDICTED: pentatricopeptide repeat-containi... 60 2e-07
ref|XP_003530137.1| PREDICTED: uncharacterized protein LOC100799... 60 3e-07
gb|AFK40744.1| unknown [Medicago truncatula] 58 1e-06
ref|XP_003626978.1| hypothetical protein MTR_8g013670 [Medicago ... 58 1e-06
ref|XP_006389726.1| hypothetical protein EUTSA_v10019037mg [Eutr... 56 4e-06
ref|XP_006389725.1| hypothetical protein EUTSA_v10019037mg [Eutr... 56 4e-06
>ref|XP_003632859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
gi|297743240|emb|CBI36107.3| unnamed protein product
[Vitis vinifera]
Length = 230
Score = 85.5 bits (210), Expect = 7e-15
Identities = 50/112 (44%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Frame = +2
Query: 17 MASLSIATTLPLHFPCRPP--TAATVGVTPVICGPRDNRGKLLRGRSLTTEXXXXXXXXX 190
MAS ++ + L P + P T T TP+ CGPRDNRG L++GR L+ E
Sbjct: 1 MASSALHSNFALFSPIKKPVQTITTTSYTPIRCGPRDNRGPLMKGRVLSIEAIQAIQSLK 60
Query: 191 XXXXXGDDPKVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
GD K+D + SRLVK+DLLA L EL RQDQ LAL+ F+A RS
Sbjct: 61 RAHR-GDPTKIDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRS 111
>gb|EXB74541.1| hypothetical protein L484_026238 [Morus notabilis]
Length = 238
Score = 74.7 bits (182), Expect = 1e-11
Identities = 49/116 (42%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Frame = +2
Query: 32 IATTLPLH--------FPCRPP---TAATVGVTPVICGPRDNRGKLLRGRSLTTEXXXXX 178
+ATTLP H P P TA T P+ CGPRDNRG L++GR L+ E
Sbjct: 1 MATTLPPHPAPFLKTPLPIPKPNTTTAITSSYAPIRCGPRDNRGPLVKGRILSIEAIQAV 60
Query: 179 XXXXXXXXXGDDPKVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
D + + + SRL+KSDLLAAL+EL RQD LAL F+A RS
Sbjct: 61 QALKRAHR-SDPSTLPTVASKTLSRLIKSDLLAALKELLRQDHCALALHVFSAVRS 115
>ref|XP_004305281.1| PREDICTED: uncharacterized protein LOC101315171 [Fragaria vesca
subsp. vesca]
Length = 229
Score = 67.8 bits (164), Expect = 1e-09
Identities = 42/92 (45%), Positives = 52/92 (56%)
Frame = +2
Query: 71 PTAATVGVTPVICGPRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVDRIFASDFS 250
PT+ V P+ CGPRD RG L++GR L+ E DP + S
Sbjct: 22 PTSVATRV-PIRCGPRDKRGPLVKGRVLSIEAIQAVQALKRAQR--SDPDDPSPVSKTLS 78
Query: 251 RLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
RL+KSDL+AAL+EL RQDQ LAL+A AA RS
Sbjct: 79 RLIKSDLVAALKELLRQDQCHLALQALAAFRS 110
>gb|EMJ17141.1| hypothetical protein PRUPE_ppa011224mg [Prunus persica]
Length = 219
Score = 67.8 bits (164), Expect = 1e-09
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Frame = +2
Query: 47 PLHF----PCRPPTAATVGVTPVICGPRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDD 214
P HF P T T+ V CGPRDNRG L++GR L+ E D
Sbjct: 9 PTHFLKLKPLTLTTNRTITHVSVRCGPRDNRGPLVKGRVLSIEAIQAVQALKRAQR-SDP 67
Query: 215 PKVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
++ + + SRL+K+DL+AALREL RQ+Q LAL+ F+ RS
Sbjct: 68 TELPTLASKTLSRLIKADLVAALRELLRQEQCHLALQVFSTFRS 111
>ref|XP_004141838.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449491766|ref|XP_004158997.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 230
Score = 67.4 bits (163), Expect = 2e-09
Identities = 38/112 (33%), Positives = 62/112 (55%)
Frame = +2
Query: 11 SAMASLSIATTLPLHFPCRPPTAATVGVTPVICGPRDNRGKLLRGRSLTTEXXXXXXXXX 190
S++ S + + + + P T+ V CGPRDNRG L++GR+L+ E
Sbjct: 3 SSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQSLK 62
Query: 191 XXXXXGDDPKVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
D K+ ++ ++ SRL+K+DL+A L+EL RQ++ LAL+ FA +S
Sbjct: 63 RAER-SDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKS 113
>ref|XP_004968266.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Setaria italica]
Length = 263
Score = 66.2 bits (160), Expect = 4e-09
Identities = 47/111 (42%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +2
Query: 17 MASLS-IATTLPLHFPCRPPTAATVGVTPVICGPRDNRGKLLRGRSLTTEXXXXXXXXXX 193
MASL + P P PTA V+ + CGPRDNRG L RGRSL+TE
Sbjct: 1 MASLLFVPRPTPGSRPAPAPTARPRTVSIITCGPRDNRGPLQRGRSLSTEAILGIQSLKR 60
Query: 194 XXXXGDDP-KVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAAR 343
P AS RL+K+DL+AA+ ELQRQ LAL A AR
Sbjct: 61 LTAADRSPAAASAAAASALGRLLKADLVAAMAELQRQGHWSLALAALHVAR 111
>ref|XP_006850605.1| hypothetical protein AMTR_s00034p00130400 [Amborella trichopoda]
gi|548854274|gb|ERN12186.1| hypothetical protein
AMTR_s00034p00130400 [Amborella trichopoda]
Length = 250
Score = 65.5 bits (158), Expect = 7e-09
Identities = 44/109 (40%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +2
Query: 20 ASLSIATTLPLHFPCRPPTAATVGVTPVICGPRD-NRGKLLRGRSLTTEXXXXXXXXXXX 196
A LS+ L LH + G+ CGPRD NRG L RGR L+TE
Sbjct: 30 AELSVLPPLSLHLSTASSAKRSTGIW---CGPRDQNRGPLARGRLLSTEAMLAIQSLK-- 84
Query: 197 XXXGDDPKVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAAR 343
+ + A SRL+K+DLLA L+ELQRQDQ LAL+ F R
Sbjct: 85 -------RSPNLLAQTTSRLLKADLLAVLKELQRQDQCHLALQVFGVVR 126
>gb|EOY26848.1| Emb:CAB51178.1, putative [Theobroma cacao]
Length = 226
Score = 64.7 bits (156), Expect = 1e-08
Identities = 38/84 (45%), Positives = 44/84 (52%)
Frame = +2
Query: 95 TPVICGPRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVDRIFASDFSRLVKSDLL 274
TP+ CGPRDNRG L++GR L+TE P SRL+KSDLL
Sbjct: 25 TPIRCGPRDNRGPLVKGRILSTE-AIQAIQSLKRAYRNSSPTTTNTQLPSLSRLIKSDLL 83
Query: 275 AALRELQRQDQSRLALKAFAAARS 346
A L EL RQDQ LAL + RS
Sbjct: 84 ATLLELLRQDQCILALHVLSTVRS 107
>gb|ACN40805.1| unknown [Picea sitchensis]
Length = 274
Score = 64.7 bits (156), Expect = 1e-08
Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +2
Query: 98 PVICGPRD---NRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVDRIFASDFSRLVKSD 268
P +C RD NRG L RGR L+TE GD ++++ FA+ RL+K D
Sbjct: 66 PSVCNMRDKGQNRGPLWRGRILSTEAIQAVQALRRAK--GDPQRLEKAFATKIPRLLKKD 123
Query: 269 LLAALRELQRQDQSRLALKAFAAAR 343
LLA L+ELQRQDQ LAL+ F A R
Sbjct: 124 LLAVLQELQRQDQCDLALQVFKAVR 148
>ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|9757668|dbj|BAB08187.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|15528644|dbj|BAB64665.1| Tha8 -like [Oryza sativa
Japonica Group] gi|113531606|dbj|BAF03989.1|
Os01g0158100 [Oryza sativa Japonica Group]
gi|125569105|gb|EAZ10620.1| hypothetical protein
OsJ_00452 [Oryza sativa Japonica Group]
Length = 267
Score = 62.0 bits (149), Expect = 8e-08
Identities = 46/115 (40%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Frame = +2
Query: 11 SAMASLSIATTLPLHFPCRPPTAATVGVTP--VICGPRDNRGKLLRGRSLTTEXXXXXXX 184
+++ SL T P P P + TP + CGPRDNRG L RGRSL+TE
Sbjct: 2 ASLLSLPRLTLTPT--PRANPGRRSARPTPASITCGPRDNRGPLQRGRSLSTEAILAVQS 59
Query: 185 XXXXXXXGDDPKVDRIFAS-DFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
P AS RL+K DLLAA+ ELQRQ LAL A AR+
Sbjct: 60 LKRLTSSDRSPAAAAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAALHVARA 114
>gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indica Group]
Length = 257
Score = 62.0 bits (149), Expect = 8e-08
Identities = 46/115 (40%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Frame = +2
Query: 11 SAMASLSIATTLPLHFPCRPPTAATVGVTP--VICGPRDNRGKLLRGRSLTTEXXXXXXX 184
+++ SL T P P P + TP + CGPRDNRG L RGRSL+TE
Sbjct: 2 ASLLSLPRLTLTPT--PRANPGRRSARPTPASITCGPRDNRGPLQRGRSLSTEAILAVQS 59
Query: 185 XXXXXXXGDDPKVDRIFAS-DFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
P AS RL+K DLLAA+ ELQRQ LAL A AR+
Sbjct: 60 LKRLTSSDRSPAAAAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAALHVARA 114
>gb|AAS55478.1| Tha8 [Zea mays]
Length = 263
Score = 61.6 bits (148), Expect = 1e-07
Identities = 46/115 (40%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +2
Query: 17 MASLSIATTLPLHFPCRPPTAATVGVTP----VICGPRDNRGKLLRGRSLTTEXXXXXXX 184
MASL + L + PC P + G P + CGPRDNRG L RGRSL+TE
Sbjct: 1 MASLLLVPRLTRN-PCSNP-GPSAGHKPRPVSITCGPRDNRGPLQRGRSLSTEAILAIQS 58
Query: 185 XXXXXXXGDDP-KVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
P A+ RL+K+DL+AA+ ELQRQ LAL A AR+
Sbjct: 59 LKRLTSADRSPAAASAAAATALGRLLKADLVAAMAELQRQGHWSLALAALHIARA 113
>ref|XP_004235686.1| PREDICTED: uncharacterized protein LOC101267975 [Solanum
lycopersicum]
Length = 228
Score = 61.2 bits (147), Expect = 1e-07
Identities = 36/93 (38%), Positives = 50/93 (53%)
Frame = +2
Query: 68 PPTAATVGVTPVICGPRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVDRIFASDF 247
PP + T V CGPR NRG L++GR L+ E D +++ +
Sbjct: 22 PPKSTTRRKISVRCGPRSNRGPLVKGRILSIEAIQAIQALKRAQRT-DPSQIEAQVSKTL 80
Query: 248 SRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
+RL+K+DL+AA +EL RQD LALK F A +S
Sbjct: 81 NRLIKTDLIAAYKELLRQDLCDLALKVFPAVQS 113
>ref|NP_001105250.1| thylakoid assembly8 [Zea mays] gi|45183621|gb|AAS55479.1| Tha8 [Zea
mays] gi|413947428|gb|AFW80077.1| thylakoid assembly8
[Zea mays]
Length = 263
Score = 61.2 bits (147), Expect = 1e-07
Identities = 46/115 (40%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Frame = +2
Query: 17 MASLSIATTLPLHFPCRPPTAATVGVTP----VICGPRDNRGKLLRGRSLTTEXXXXXXX 184
MASL + L PC P + G P + CGPRDNRG L RGRSL+TE
Sbjct: 1 MASLLLVPRLT-RSPCSNP-GPSAGHKPRPVSITCGPRDNRGPLQRGRSLSTEAILAIQS 58
Query: 185 XXXXXXXGDDP-KVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
P A+ RL+K+DL+AA+ ELQRQ LAL A AR+
Sbjct: 59 LKRLTSADRSPAAASAAAATALGRLLKADLVAAMAELQRQGHWSLALAALHIARA 113
>ref|XP_003565206.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
gi|554793804|pdb|4ME2|A Chain A, Crystal Structure Of
Tha8 Protein From Brachypodium Distachyon
gi|554793836|pdb|4N2Q|A Chain A, Crystal Structure Of
Tha8 In Complex With Zm4 Rna gi|554793838|pdb|4N2S|A
Chain A, Crystal Structure Of Tha8 In Complex With
Zm1a-6 Rna
Length = 257
Score = 60.5 bits (145), Expect = 2e-07
Identities = 38/85 (44%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 95 TPVICGPRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVDRIFAS-DFSRLVKSDL 271
T + CGPRDNRG L RGRSL+TE P AS RL+++DL
Sbjct: 26 TIITCGPRDNRGPLQRGRSLSTEAIHAVQALKRLTAADRSPPAATAAASAALGRLLRADL 85
Query: 272 LAALRELQRQDQSRLALKAFAAARS 346
LAA+ ELQRQ LAL A AR+
Sbjct: 86 LAAMAELQRQGHWSLALAALHVARA 110
>ref|XP_003530137.1| PREDICTED: uncharacterized protein LOC100799612 [Glycine max]
Length = 240
Score = 60.1 bits (144), Expect = 3e-07
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +2
Query: 47 PLHFPCRPPTAATV--GVTPVICG-PRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDP 217
P +PPT AT G V CG PR R L++GR L+ E + P
Sbjct: 9 PTFLKLKPPTIATPRWGYVRVRCGGPRSQRSPLMKGRILSIEAIQAIQTLKRLHRT-NPP 67
Query: 218 KVDRIFASDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
+ + ++ +RL+KSDLLA LREL RQ +AL+AF+ RS
Sbjct: 68 NLSSLVSNTLTRLIKSDLLATLRELLRQQHCTIALRAFSTLRS 110
>gb|AFK40744.1| unknown [Medicago truncatula]
Length = 263
Score = 57.8 bits (138), Expect = 1e-06
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +2
Query: 65 RPPTAATVGVTPVICG-PRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVD-RIFA 238
+P T PV CG PR RG L++GR L+ E + + ++
Sbjct: 21 KPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAIQAIQTLKRINRINPQTQTETQLQT 80
Query: 239 SDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
+RL+KSDL+A L+EL RQ+Q LAL+ F+A RS
Sbjct: 81 KTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRS 116
>ref|XP_003626978.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
gi|355521000|gb|AET01454.1| hypothetical protein
MTR_8g013670 [Medicago truncatula]
Length = 239
Score = 57.8 bits (138), Expect = 1e-06
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +2
Query: 65 RPPTAATVGVTPVICG-PRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVD-RIFA 238
+P T PV CG PR RG L++GR L+ E + + ++
Sbjct: 21 KPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAIQAIQTLKRINRINPQTQTETQLQT 80
Query: 239 SDFSRLVKSDLLAALRELQRQDQSRLALKAFAAARS 346
+RL+KSDL+A L+EL RQ+Q LAL+ F+A RS
Sbjct: 81 KTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRS 116
>ref|XP_006389726.1| hypothetical protein EUTSA_v10019037mg [Eutrema salsugineum]
gi|557086160|gb|ESQ27012.1| hypothetical protein
EUTSA_v10019037mg [Eutrema salsugineum]
Length = 252
Score = 56.2 bits (134), Expect = 4e-06
Identities = 34/80 (42%), Positives = 42/80 (52%)
Frame = +2
Query: 107 CGPRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVDRIFASDFSRLVKSDLLAALR 286
CGPRDNRG LL+GR L++E G + RL+K+DLLA LR
Sbjct: 52 CGPRDNRGPLLKGRILSSEAIQSIQSLKRAHRTGSVS----LSLPPLRRLLKADLLAVLR 107
Query: 287 ELQRQDQSRLALKAFAAARS 346
EL RQDQ LA+ + RS
Sbjct: 108 ELLRQDQCTLAVHVLSTLRS 127
>ref|XP_006389725.1| hypothetical protein EUTSA_v10019037mg [Eutrema salsugineum]
gi|557086159|gb|ESQ27011.1| hypothetical protein
EUTSA_v10019037mg [Eutrema salsugineum]
Length = 245
Score = 56.2 bits (134), Expect = 4e-06
Identities = 34/80 (42%), Positives = 42/80 (52%)
Frame = +2
Query: 107 CGPRDNRGKLLRGRSLTTEXXXXXXXXXXXXXXGDDPKVDRIFASDFSRLVKSDLLAALR 286
CGPRDNRG LL+GR L++E G + RL+K+DLLA LR
Sbjct: 52 CGPRDNRGPLLKGRILSSEAIQSIQSLKRAHRTGSVS----LSLPPLRRLLKADLLAVLR 107
Query: 287 ELQRQDQSRLALKAFAAARS 346
EL RQDQ LA+ + RS
Sbjct: 108 ELLRQDQCTLAVHVLSTLRS 127