BLASTX nr result
ID: Zingiber24_contig00031709
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00031709
(1748 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor... 623 e-176
ref|XP_002304926.2| pseudouridine synthase family protein [Popul... 621 e-175
ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citr... 619 e-174
gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus pe... 618 e-174
ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chl... 618 e-174
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [... 616 e-173
gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma ... 609 e-171
ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Caps... 606 e-171
ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chlor... 603 e-170
ref|XP_002867828.1| pseudouridine synthase family protein [Arabi... 603 e-170
ref|XP_006858058.1| hypothetical protein AMTR_s00062p00043970 [A... 603 e-170
ref|NP_193908.1| RNA pseudourine synthase 6 [Arabidopsis thalian... 601 e-169
ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chlor... 600 e-169
ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour... 598 e-168
ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chl... 598 e-168
ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [... 597 e-168
ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chl... 597 e-168
ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chlor... 596 e-167
ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chl... 593 e-166
ref|XP_006413737.1| hypothetical protein EUTSA_v10025093mg [Eutr... 588 e-165
>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
gi|302144082|emb|CBI23187.3| unnamed protein product
[Vitis vinifera]
Length = 472
Score = 623 bits (1606), Expect = e-176
Identities = 295/450 (65%), Positives = 353/450 (78%), Gaps = 4/450 (0%)
Frame = -2
Query: 1525 TLANSLNAGSNHK----CHHSPTEQQHWVLQKKTYIAQSTLVKASTLESVCLTNGYPEYS 1358
TLA+S HK C ++PT L +S + NGYPEY
Sbjct: 35 TLASSNVFSRRHKRVVWCSNNPT-------------CTRELTASSDSANTSSVNGYPEYH 81
Query: 1357 RLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALVCPKPPP 1178
RLLPCPS N PR+EHLVV E G +LDYISKAL+LPPLFVADL+HFGAV+YALVCP+PPP
Sbjct: 82 RLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLFVADLIHFGAVYYALVCPEPPP 141
Query: 1177 TSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTYLRVHVHPKR 998
++TPEQ +++KEVT PSVL+KR SIKGKT+REAQKTFR+TD N+FVEAGTYLRVHVHPKR
Sbjct: 142 SATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEFVEAGTYLRVHVHPKR 201
Query: 997 FPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTADNIEECCATFASRALGFDAPLRTTH 818
FPRCYEIDW SRIIAVT+++V+LDKPA TSVGGT DNIEE CATFA+RALG PLRTTH
Sbjct: 202 FPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTTPLRTTH 261
Query: 817 QIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHYMRPTNVAPR 638
QIDNCTEGCVV ARTK++CS FH IREK+V+KLYRALAAAP+PIGI+THYMRP N+APR
Sbjct: 262 QIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPIGIVTHYMRPVNIAPR 321
Query: 637 LVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECTVNLLTGKTH 458
L+SED I GW+LCQLEVLECKEVPWP+ + + + +ED GWP K A++C +NLLTG+TH
Sbjct: 322 LISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKNSAFKCKINLLTGRTH 381
Query: 457 QIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFGGSCKEYESEDEKMAAIEEWIAQHG 278
QIRAQ AA G PI+GDSMY P +A + +P ++PFG K+Y +E+++ A+ EWIAQHG
Sbjct: 382 QIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTTENDRETAVAEWIAQHG 441
Query: 277 KEPNAAIGLQASHISWNNANCSYEAGDPWW 188
KEP AIGLQA ISW++ Y+AG PWW
Sbjct: 442 KEPGVAIGLQACQISWDDGEHFYKAGSPWW 471
>ref|XP_002304926.2| pseudouridine synthase family protein [Populus trichocarpa]
gi|550340110|gb|EEE85437.2| pseudouridine synthase family
protein [Populus trichocarpa]
Length = 470
Score = 621 bits (1602), Expect = e-175
Identities = 290/422 (68%), Positives = 340/422 (80%)
Frame = -2
Query: 1450 LQKKTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYI 1271
L K+ +S + + NGYPEY+RLLPCPSHN PRIEHLVV EEG +LDYI
Sbjct: 45 LSKRKLSCESLKQDIACTTATSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYI 104
Query: 1270 SKALNLPPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKT 1091
KAL+LPPLFVADL+HFGAVHYALVCP+PP T+TPEQ ++++EVT PSVLKKR+SIKGKT
Sbjct: 105 CKALDLPPLFVADLIHFGAVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKT 164
Query: 1090 VREAQKTFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAAT 911
VREAQKTFR+T +QF+EAG YLRVHVHPKRFPRCY+IDW SRII VT++FV+LDKPA T
Sbjct: 165 VREAQKTFRITHVDQFLEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGT 224
Query: 910 SVGGTADNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREK 731
SVGGT DNIEE CATFA+RALG APLRTTHQIDNCTEGCVV ART++ CS FH IREK
Sbjct: 225 SVGGTTDNIEESCATFATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREK 284
Query: 730 QVRKLYRALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANE 551
V+KLY ALAA+PVPIG++ HYMRP N+APRLVSE+ I GWHLCQLEV+ECK VPWP
Sbjct: 285 TVKKLYIALAASPVPIGVVNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAV 344
Query: 550 VFKNHKVEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMAN 371
+ + + V+DCGWPSK AYEC +NLLTG+THQIRAQ AA+G P++GDSMY P +A M +
Sbjct: 345 MEEKYCVQDCGWPSKDHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVS 404
Query: 370 PSVDPFGGSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPW 191
P +PFG K+Y SED+K A+EEW+ HGKEPN AIGLQA ISW++ Y AG PW
Sbjct: 405 PGCNPFGKYKKQYTSEDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPW 464
Query: 190 WR 185
WR
Sbjct: 465 WR 466
>ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
gi|557551677|gb|ESR62306.1| hypothetical protein
CICLE_v10015055mg [Citrus clementina]
Length = 487
Score = 619 bits (1596), Expect = e-174
Identities = 286/419 (68%), Positives = 342/419 (81%)
Frame = -2
Query: 1441 KTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKA 1262
K ++ T A+ + + GYPEY RLLPCPS N PR+EHLVV E G +L+YI +
Sbjct: 60 KRHVFTHTDTTATAAAATPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRE 119
Query: 1261 LNLPPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVRE 1082
LNLPPLFVADL+HFGAV+YALVCPKPP T+TPEQ +++KEVT+PSVL KRSSIKGKTVRE
Sbjct: 120 LNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVRE 179
Query: 1081 AQKTFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVG 902
AQKTFR+T +Q VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVT++ V+LDKPA TSVG
Sbjct: 180 AQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVG 239
Query: 901 GTADNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVR 722
GT DNIEE CATFASRALG PLRTTHQIDNCTEGCVV ART+++CS FH IREK+V+
Sbjct: 240 GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
Query: 721 KLYRALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFK 542
KLY AL AAP+P+GI+THYMRP N+APRL+SED I GW+LCQLEV+ECK+VPWP V K
Sbjct: 300 KLYLALTAAPLPVGIMTHYMRPINIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGK 359
Query: 541 NHKVEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSV 362
+ +EDCGWPS+ AYEC + LLTG+THQ+RAQ AA G PI+GDSMY P +A++++P +
Sbjct: 360 AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGL 419
Query: 361 DPFGGSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
+PFG KEY S+D+K A+ EWI+QHGKEP+ AIGLQA HISW++ C YEA PWWR
Sbjct: 420 NPFGKCQKEYASDDDKEMAVIEWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWR 478
>gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus persica]
Length = 477
Score = 618 bits (1594), Expect = e-174
Identities = 289/421 (68%), Positives = 341/421 (80%)
Frame = -2
Query: 1447 QKKTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYIS 1268
++ T+ +S + SV NGYPEY+RLLPCPSHN PR+EHLVV E G +L+YI
Sbjct: 55 KRTTFACESLKQGVTQPTSVSSVNGYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYIC 114
Query: 1267 KALNLPPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTV 1088
K L+LPP FVADL+HFGAV+YALVCPKPPPT+TPEQ +++KEVT PSVLK R+SIKGKTV
Sbjct: 115 KTLDLPPQFVADLIHFGAVYYALVCPKPPPTATPEQMRVFKEVTAPSVLKNRASIKGKTV 174
Query: 1087 REAQKTFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATS 908
REAQKTFR+T A++FVEAGTYLRVHVHPKRFPRCY+IDW SRIIAV++ FV+LDKPA T+
Sbjct: 175 REAQKTFRITHADEFVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVSEEFVVLDKPAGTT 234
Query: 907 VGGTADNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQ 728
VGGT DNIEE CATFA+RALG PL TTHQIDNCTEGCVV ARTK++CS FH IREK+
Sbjct: 235 VGGTTDNIEESCATFATRALGLTTPLNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKK 294
Query: 727 VRKLYRALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEV 548
V+KLY ALAAAPVP GIITHYMRP NVAPRL+SED I W LCQLEV+ECKE+PWP V
Sbjct: 295 VKKLYLALAAAPVPTGIITHYMRPINVAPRLISEDFIERWSLCQLEVMECKEIPWPNAVV 354
Query: 547 FKNHKVEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANP 368
+ + VEDCGWPSK AYEC +NLLTG+THQ+RAQ AA G PI+GDSMY P +A M +P
Sbjct: 355 EEKYCVEDCGWPSKDYAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESP 414
Query: 367 SVDPFGGSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWW 188
++PFG K Y +E++K A+ EWIA+HGKEPN AIGLQA ISW++ ++EA PWW
Sbjct: 415 GLNPFGQYKKHYTTENDKETAVAEWIARHGKEPNVAIGLQACQISWDDGKHTFEARAPWW 474
Query: 187 R 185
R
Sbjct: 475 R 475
>ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Citrus sinensis] gi|568827302|ref|XP_006468003.1|
PREDICTED: RNA pseudouridine synthase 6,
chloroplastic-like isoform X2 [Citrus sinensis]
Length = 487
Score = 618 bits (1593), Expect = e-174
Identities = 288/426 (67%), Positives = 343/426 (80%)
Frame = -2
Query: 1462 QHWVLQKKTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFI 1283
+ W T+ + + A+T S GYPEY RLLPCPS N PR+EHLVV E G +
Sbjct: 57 ESWKRHVFTHTDTAAIAAATTPSSY----GYPEYHRLLPCPSQNCPPRVEHLVVSEGGPV 112
Query: 1282 LDYISKALNLPPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSI 1103
L+YI + LNLPPLFVADL+HFGAV+YALVCPKPP T+TPEQ +++KEVT+PSVL KRSSI
Sbjct: 113 LEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSI 172
Query: 1102 KGKTVREAQKTFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDK 923
KGKTVREAQKTFR+T +Q VEAGTYLRVHVHPKRFPRCY+IDWNSRIIAVT++ V+LDK
Sbjct: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
Query: 922 PAATSVGGTADNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSM 743
PA TSVGGT DNIEE CATFASRALG PLRTTHQIDNCTEGCVV ART+++CS FH
Sbjct: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRK 292
Query: 742 IREKQVRKLYRALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPW 563
IREK+V+KLY AL AP+P+GI+THYMRP N+APRLVSED I GW+LCQLEV+ECK+VPW
Sbjct: 293 IREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEDFITGWYLCQLEVMECKKVPW 352
Query: 562 PANEVFKNHKVEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMA 383
P V K + +EDCGWPS+ AYEC + LLTG+THQ+RAQ AA G PI+GDSMY P +A
Sbjct: 353 PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIA 412
Query: 382 RMANPSVDPFGGSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEA 203
++++P ++PFG KEY S+D+K A+ EWI+QHG EP+ AIGLQA HISW++ C YEA
Sbjct: 413 QLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEA 472
Query: 202 GDPWWR 185
PWWR
Sbjct: 473 RSPWWR 478
>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 476
Score = 616 bits (1588), Expect = e-173
Identities = 290/449 (64%), Positives = 356/449 (79%), Gaps = 2/449 (0%)
Frame = -2
Query: 1525 TLANSLNAGSNHKCHHSPTEQQHWVLQ--KKTYIAQSTLVKASTLESVCLTNGYPEYSRL 1352
TLA S +A S H+ HH + L ++ + +S+ + + + NG +Y RL
Sbjct: 26 TLA-STHAYSFHR-HHPKNALARFSLNSHERKFCCESSKPEVAYTTNTSCVNGNSDYDRL 83
Query: 1351 LPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALVCPKPPPTS 1172
LPCPS+N+ PRIEHLVVLEEG +LDYI KAL+LPPLFVADL+ FGAVHYALVCP+PP T+
Sbjct: 84 LPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVADLIDFGAVHYALVCPRPPTTA 143
Query: 1171 TPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTYLRVHVHPKRFP 992
TPEQ +++++ T PSVLKKRSSIKGKTVREAQKTFR+T +Q++EAGTYLRVHVHPKRFP
Sbjct: 144 TPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHVDQYLEAGTYLRVHVHPKRFP 203
Query: 991 RCYEIDWNSRIIAVTDTFVILDKPAATSVGGTADNIEECCATFASRALGFDAPLRTTHQI 812
RCY+IDW SRIIAVTD +V+LDKPA TSVGGTADNIEE CATFA+RALG PL+TTHQI
Sbjct: 204 RCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCATFATRALGLTTPLKTTHQI 263
Query: 811 DNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHYMRPTNVAPRLV 632
DNCTEGCVV AR+K++CS FH IREK+V+KLY ALAA+PVP+G+I +YMRP N+APRL+
Sbjct: 264 DNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPVPVGVIKNYMRPVNIAPRLL 323
Query: 631 SEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECTVNLLTGKTHQI 452
SE+ + GWHLCQLEVLEC++VPWP + + + VEDCGWPSK AYEC +NLLTG+THQI
Sbjct: 324 SEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPSKDFAYECKINLLTGRTHQI 383
Query: 451 RAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFGGSCKEYESEDEKMAAIEEWIAQHGKE 272
RAQ AA G P++GDSMY P +A MANP ++PFG K+Y +E ++ A+ EW+AQHGKE
Sbjct: 384 RAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQYTNESDESMAVAEWVAQHGKE 443
Query: 271 PNAAIGLQASHISWNNANCSYEAGDPWWR 185
P AIGLQA ISW+ Y+AG PWWR
Sbjct: 444 PKVAIGLQACEISWDEGKHIYKAGSPWWR 472
>gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma cacao]
Length = 491
Score = 609 bits (1570), Expect = e-171
Identities = 283/396 (71%), Positives = 335/396 (84%)
Frame = -2
Query: 1372 YPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALVC 1193
YPEY RLLPCPSHN PR+EHLVV E G +L+YI KAL+LPP+FVADL+HFGAV+YALVC
Sbjct: 93 YPEYHRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKALDLPPMFVADLIHFGAVYYALVC 152
Query: 1192 PKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTYLRVH 1013
P+PPP++TPEQ +I+KEVT PSVL KR+SI+GKTVREAQKTFR+T +QFVEAGTYLRVH
Sbjct: 153 PQPPPSATPEQIRIFKEVTAPSVLSKRTSIRGKTVREAQKTFRITHVDQFVEAGTYLRVH 212
Query: 1012 VHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTADNIEECCATFASRALGFDAP 833
VHPKRFPRCYEIDW SRIIAVTD++V+LDKPA TSVGGT DNIEE CATFA+RALGF P
Sbjct: 213 VHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCATFANRALGFSTP 272
Query: 832 LRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHYMRPT 653
L+TTHQIDNCTEGCVV ARTK++CS FH IREK+V+KLY AL AAP+PIG+ITHYMRP
Sbjct: 273 LKTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPLPIGVITHYMRPI 332
Query: 652 NVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECTVNLL 473
N+APRLVSED I GW+LCQLEV+ECK+VPWP + +N+ +ED GWP K AYEC +NLL
Sbjct: 333 NMAPRLVSEDFIKGWYLCQLEVMECKKVPWPDYVIQENYCIEDSGWPLKDHAYECKINLL 392
Query: 472 TGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFGGSCKEYESEDEKMAAIEEW 293
TG+THQ+RAQ AA G PI+GDSMY PP +A +ANP ++PF G K++ SE++K AI EW
Sbjct: 393 TGRTHQVRAQLAACGAPILGDSMYMPPTIAEIANPGLNPF-GKYKKHTSENDKEIAITEW 451
Query: 292 IAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
I+Q GKEP+ AIGLQA ISW++ Y+A PWWR
Sbjct: 452 ISQFGKEPSVAIGLQACQISWDDGEHFYKARSPWWR 487
>ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Capsella rubella]
gi|482553612|gb|EOA17805.1| hypothetical protein
CARUB_v10006203mg [Capsella rubella]
Length = 479
Score = 606 bits (1563), Expect = e-171
Identities = 286/418 (68%), Positives = 341/418 (81%), Gaps = 4/418 (0%)
Frame = -2
Query: 1426 QSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFIL-DYISKALNLP 1250
Q+TL +ST +GYPEY+RL+PCP++N PRIEH+VVLE+ ++ ++IS+ L+LP
Sbjct: 69 QTTLTSSST-------SGYPEYNRLMPCPAYNNPPRIEHMVVLEDDVLVAEFISRQLDLP 121
Query: 1249 PLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKT 1070
PL+VADL+ FGAVHYALVCPKPPPT+TPE+ ++++EVT PSVLKKRSSIKGKTVREAQKT
Sbjct: 122 PLYVADLIRFGAVHYALVCPKPPPTATPEEIKLFEEVTSPSVLKKRSSIKGKTVREAQKT 181
Query: 1069 FRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTAD 890
FRVT +Q+ EAGTYLRVHVHPKR PRCYEIDW SRIIAVTD++VILDKPA T+VGGT D
Sbjct: 182 FRVTHTDQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIIAVTDSYVILDKPAGTTVGGTTD 241
Query: 889 NIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYR 710
NIEE CATFASRAL PL+TTHQIDNCTEGCVVFARTK++CS FH IR+K+V+KLYR
Sbjct: 242 NIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHMKIRDKEVKKLYR 301
Query: 709 ALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKV 530
ALAAAP+P GII+HYMRP N+APRLVSED I GWHLCQLEVLECK++PWP K H +
Sbjct: 302 ALAAAPLPTGIISHYMRPKNMAPRLVSEDSIKGWHLCQLEVLECKKIPWPNAGTEKKHDI 361
Query: 529 EDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFG 350
EDCGW SK AYECT+NLLTGKTHQIRAQ AA G P++GDSMY P +A M NP ++P+G
Sbjct: 362 EDCGWTSKEFAYECTINLLTGKTHQIRAQLAAYGAPLVGDSMYMPAAIAEMMNPEINPYG 421
Query: 349 GSCKEYE-SEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCS--YEAGDPWWR 185
+ K Y E++K A+ EWI +HGKEP IGLQA ISW++ + YEAG PWWR
Sbjct: 422 KAKKHYTMEENDKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 479
>ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 603 bits (1556), Expect = e-170
Identities = 276/398 (69%), Positives = 332/398 (83%)
Frame = -2
Query: 1378 NGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYAL 1199
NGYP+Y RLLPCPS ++ PR+EH+VVLE G +++YI K+LNLPPL+VADL+HFGAV+YAL
Sbjct: 74 NGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYAL 133
Query: 1198 VCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTYLR 1019
VCP+PP T+TPEQ +++K+ TEPS LK R SIKGKTVREAQKTFR+T ++FVE GTYLR
Sbjct: 134 VCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLR 193
Query: 1018 VHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTADNIEECCATFASRALGFD 839
VHVHPKRFPRCYEIDW SRIIAVT+++V+LDKPA TSVGGT DNIEE CATFA+RALG
Sbjct: 194 VHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLT 253
Query: 838 APLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHYMR 659
+PL TTHQIDNCTEGCV+FARTK++CS FH IREK+V KLY AL+AAPVP+GIITHYMR
Sbjct: 254 SPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMR 313
Query: 658 PTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECTVN 479
P N+APRLVS+D I GW +CQLEVLEC+EV WP ++ ++VEDCGWPSK+ AYEC +N
Sbjct: 314 PINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDCGWPSKKKAYECRIN 373
Query: 478 LLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFGGSCKEYESEDEKMAAIE 299
LLTG+THQIRAQ A G P++GDSMY P V+A M +P ++PFG KEY +E++K A+
Sbjct: 374 LLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYTNEEDKETAVA 433
Query: 298 EWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
EW A HGKEP AIGLQA ISW++ SY AG PWWR
Sbjct: 434 EWSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWR 471
>ref|XP_002867828.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata] gi|297313664|gb|EFH44087.1| pseudouridine
synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 476
Score = 603 bits (1556), Expect = e-170
Identities = 283/403 (70%), Positives = 332/403 (82%), Gaps = 4/403 (0%)
Frame = -2
Query: 1381 TNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFIL-DYISKALNLPPLFVADLVHFGAVHY 1205
T+GYPEY+RL+PCP+HN PRIEH+VVLE+ ++ ++ISK L+LPPL+V+DL+ FGAVHY
Sbjct: 74 TSGYPEYNRLMPCPAHNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVSDLIRFGAVHY 133
Query: 1204 ALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTY 1025
ALVCPKPPPT+TPEQ ++++EVT PSVLKKRSSIKGKTVREAQKTFRVT NQ+ EAGTY
Sbjct: 134 ALVCPKPPPTATPEQIELFEEVTCPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTY 193
Query: 1024 LRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTADNIEECCATFASRALG 845
LRVHVHPKR PRCYEIDW SRI+AVTD++VILDKPA T+VGGT DNIEE CATFASRAL
Sbjct: 194 LRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALD 253
Query: 844 FDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHY 665
PL+TTHQIDNCTEGCVVFARTK++CS FH+ IR K+V+KLYRALAAAP+P GII+HY
Sbjct: 254 LPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPTGIISHY 313
Query: 664 MRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECT 485
MRP N+APRLVSED I GWHLCQLEVLECK++PWP K H +EDCGW SK AYECT
Sbjct: 314 MRPKNMAPRLVSEDSIKGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECT 373
Query: 484 VNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFGGSCKEYE-SEDEKMA 308
+NLLTGKTHQIRAQ AA G P++GDSMY P +A M NP + +G + K Y E++K
Sbjct: 374 INLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMVNPDTNLYGKAKKHYTMEENDKDT 433
Query: 307 AIEEWIAQHGKEPNAAIGLQASHISW--NNANCSYEAGDPWWR 185
A+ EWI +HGKEP IGLQA ISW ++ YEAG PWWR
Sbjct: 434 AVAEWIDRHGKEPRVGIGLQACQISWYDDDGEHFYEAGTPWWR 476
>ref|XP_006858058.1| hypothetical protein AMTR_s00062p00043970 [Amborella trichopoda]
gi|548862161|gb|ERN19525.1| hypothetical protein
AMTR_s00062p00043970 [Amborella trichopoda]
Length = 477
Score = 603 bits (1555), Expect = e-170
Identities = 282/419 (67%), Positives = 338/419 (80%)
Frame = -2
Query: 1441 KTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKA 1262
K + +++ +A+T S +N YP Y+ LLPCPS N PRIEHL+V E G +LDYI KA
Sbjct: 57 KRLVGSTSITQANTTISTSPSNVYPGYTSLLPCPSKNGPPRIEHLIVSEGGPVLDYICKA 116
Query: 1261 LNLPPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVRE 1082
L+LP LFVADL+HFGAV+YALV P+PPP++TPEQ +++KE T SVL+KR+S+KGKTVRE
Sbjct: 117 LDLPTLFVADLIHFGAVYYALVSPEPPPSATPEQVKLFKEATARSVLRKRASLKGKTVRE 176
Query: 1081 AQKTFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVG 902
AQKTFR+T AN+FVE GTYLRV+VHPKRFPRCYEIDW SR+IA T+++V+LDKPAAT+VG
Sbjct: 177 AQKTFRITHANEFVEEGTYLRVYVHPKRFPRCYEIDWRSRVIAETESYVVLDKPAATTVG 236
Query: 901 GTADNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVR 722
GT NIEECCATF SRALG D PLRTTHQIDNCTEGCVVF++TK+FCS FH IREKQV+
Sbjct: 237 GTPCNIEECCATFVSRALGLDFPLRTTHQIDNCTEGCVVFSKTKEFCSIFHGKIREKQVK 296
Query: 721 KLYRALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFK 542
KLY ALA APVP+G+I+HYMRP N APR++S+D IGGWHLCQLEVLECKEVPWP V
Sbjct: 297 KLYLALATAPVPVGVISHYMRPVNRAPRIISKDHIGGWHLCQLEVLECKEVPWPRAAVEA 356
Query: 541 NHKVEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSV 362
+ VEDCGWPSK AYEC +NLLTG+THQIRAQ AA G PI+GD+MY P + +A P++
Sbjct: 357 QNGVEDCGWPSKDFAYECKINLLTGRTHQIRAQLAACGAPIVGDTMYLPASIKEIAFPNI 416
Query: 361 DPFGGSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
+PF + E ++ K A+EEWIAQHGKEPNAAIGLQA ISW+ C Y A PWWR
Sbjct: 417 NPFCEANSESMCDESKGEAVEEWIAQHGKEPNAAIGLQACEISWDGGACFYTARAPWWR 475
>ref|NP_193908.1| RNA pseudourine synthase 6 [Arabidopsis thaliana]
gi|75212600|sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA
pseudouridine synthase 6, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 6; AltName:
Full=RNA-uridine isomerase 6; Flags: Precursor
gi|4455285|emb|CAB36821.1| hypothetical protein
[Arabidopsis thaliana] gi|7268974|emb|CAB81284.1|
hypothetical protein [Arabidopsis thaliana]
gi|23296381|gb|AAN13057.1| unknown protein [Arabidopsis
thaliana] gi|110741616|dbj|BAE98756.1| hypothetical
protein [Arabidopsis thaliana]
gi|332659101|gb|AEE84501.1| RNA pseudourine synthase 6
[Arabidopsis thaliana]
Length = 472
Score = 601 bits (1550), Expect = e-169
Identities = 290/439 (66%), Positives = 344/439 (78%), Gaps = 7/439 (1%)
Frame = -2
Query: 1480 HSPTEQQHWVLQKKTYIAQSTLVKAS---TLESVCLTNGYPEYSRLLPCPSHNQFPRIEH 1310
HSP ++ K + S L S T S +GY EY+RL+PCP++N PRIEH
Sbjct: 38 HSP----RFISSPKRFTCLSLLKTDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEH 93
Query: 1309 LVVLEEGFIL-DYISKALNLPPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTE 1133
+VVLE+ ++ ++ISK L+LPPL+VADL+ FGAVHYALVCPKPPPT+TPE+ +++EVT
Sbjct: 94 MVVLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTS 153
Query: 1132 PSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIA 953
PSVLKKRSSIKGKTVREAQKTFRVT NQ+ EAGTYLRVHVHPKR PRCYEIDW SRI+A
Sbjct: 154 PSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVA 213
Query: 952 VTDTFVILDKPAATSVGGTADNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFART 773
VTD++VILDKPA T+VGGT DNIEE CATFASRAL PL+TTHQIDNCTEGCVVFART
Sbjct: 214 VTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFART 273
Query: 772 KDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQL 593
K++CS FH+ IR K+V+KLYRALAAAP+PIGII+HYMRP N+APRLV+ED I GWHLCQL
Sbjct: 274 KEYCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRPKNMAPRLVAEDSIQGWHLCQL 333
Query: 592 EVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIG 413
EVLECK++PWP K H +EDCGW SK AYECT+NLLTGKTHQIRAQ AA G P++G
Sbjct: 334 EVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVG 393
Query: 412 DSMYTPPVMARMANPSVDPFGGSCKEYE-SEDEKMAAIEEWIAQHGKEPNAAIGLQASHI 236
DSMY P +A M NP +P+G + K Y E++K A+ EWI +HGKEP IGLQA I
Sbjct: 394 DSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQI 453
Query: 235 SWNNANCS--YEAGDPWWR 185
SW++ + YEAG PWWR
Sbjct: 454 SWDDDDGEHFYEAGTPWWR 472
>ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Fragaria
vesca subsp. vesca]
Length = 477
Score = 600 bits (1548), Expect = e-169
Identities = 281/397 (70%), Positives = 326/397 (82%)
Frame = -2
Query: 1375 GYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALV 1196
GYP Y+RLLPCPS N PR+EHLVV E G +L+YI K L+LP FVADL+HFGAV+YALV
Sbjct: 80 GYP-YTRLLPCPSQNGPPRVEHLVVSEGGPVLEYICKKLDLPAQFVADLIHFGAVYYALV 138
Query: 1195 CPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTYLRV 1016
CPKPPPT+TPEQ ++YKEVT PSVLKKR SIKGKTVREAQKTFR+T A+Q+VE GTYLRV
Sbjct: 139 CPKPPPTATPEQMRVYKEVTAPSVLKKRDSIKGKTVREAQKTFRITHADQYVEDGTYLRV 198
Query: 1015 HVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTADNIEECCATFASRALGFDA 836
HVHPKRFPRCY+IDW SR+IAVT+ FV+LDKPA T+VGGT DNIEE CATF SRALG
Sbjct: 199 HVHPKRFPRCYDIDWKSRVIAVTEDFVVLDKPAGTTVGGTTDNIEESCATFTSRALGLST 258
Query: 835 PLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHYMRP 656
PL TTHQIDNCTEGCVV ARTKD+CS FH IREK+V+KLY ALAAAPVP+G ITHYMRP
Sbjct: 259 PLMTTHQIDNCTEGCVVLARTKDYCSVFHGKIREKKVKKLYLALAAAPVPLGTITHYMRP 318
Query: 655 TNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECTVNL 476
NVAPRL+SED I W LCQLEV+ECK+VPWP++ + + + VEDCGWPSK AYEC +NL
Sbjct: 319 INVAPRLISEDSIERWSLCQLEVMECKKVPWPSSVIEEEYGVEDCGWPSKDYAYECKINL 378
Query: 475 LTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFGGSCKEYESEDEKMAAIEE 296
LTGKTHQIRAQ AA G P++GDSMY P +A M NP ++PFG K Y E+++ A+ E
Sbjct: 379 LTGKTHQIRAQLAACGTPLVGDSMYMPAAIAEMENPELNPFGKHKKHYAGENDEEIAVTE 438
Query: 295 WIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
W+A+HGKEP AIGLQA ISW++ S+EA PWWR
Sbjct: 439 WMARHGKEPIVAIGLQACQISWDDGEHSFEARAPWWR 475
>ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
chloroplastic-like [Cucumis sativus]
Length = 475
Score = 598 bits (1543), Expect = e-168
Identities = 274/398 (68%), Positives = 329/398 (82%)
Frame = -2
Query: 1378 NGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYAL 1199
NGYP+Y RLLPCPS ++ PR+EH+VVLE G +++YI K+LNLPPL+VADL+HFGAV+YAL
Sbjct: 74 NGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYAL 133
Query: 1198 VCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTYLR 1019
VCP+PP T+TPEQ +++K TEPS LK R SIKGKTVREAQKTFR+T ++FVE GTYLR
Sbjct: 134 VCPQPPKTATPEQIRLFKNXTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLR 193
Query: 1018 VHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTADNIEECCATFASRALGFD 839
VHVHPKRFPRCYEIDW SRIIAVT+++V+LDKPA TSVGGT DNIEE CATFA+RALG
Sbjct: 194 VHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLT 253
Query: 838 APLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHYMR 659
+PL TTHQIDNCTEGCV+FARTK++CS FH IREK+V KLY AL+AAPVP+GIITHYMR
Sbjct: 254 SPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMR 313
Query: 658 PTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECTVN 479
P N+APRLVS+D I GW +CQLEVLEC+EV WP + ++VEDCGWPSK+ AYEC +N
Sbjct: 314 PINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADTEAKYRVEDCGWPSKKKAYECRIN 373
Query: 478 LLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFGGSCKEYESEDEKMAAIE 299
LLTG+THQIRAQ A G P++GDSMY P V+A M +P ++PFG KEY +E++K ++
Sbjct: 374 LLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYTNEEDKETSVA 433
Query: 298 EWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
EW A HGKEP AIGLQA ISW++ Y AG PWWR
Sbjct: 434 EWSALHGKEPAVAIGLQAYEISWDSREHIYNAGTPWWR 471
>ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Glycine max]
Length = 478
Score = 598 bits (1542), Expect = e-168
Identities = 279/415 (67%), Positives = 334/415 (80%)
Frame = -2
Query: 1429 AQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLP 1250
A+ + A L + ++ +P+Y RLLPCPSH PRIEHLV+ E G +L+ I KAL+LP
Sbjct: 63 AEFSTTDAGNLTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLP 122
Query: 1249 PLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKT 1070
PL+V+DL+ FGAV+YALVCP+PPP +T EQ +++KEVTEPSVL+KR+SIKGKTVREAQKT
Sbjct: 123 PLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKT 182
Query: 1069 FRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTAD 890
FRVT +QFVE GTYLRVHVHPKRFPR YEIDW SRIIAV +++V+LDKPA TSVGGT D
Sbjct: 183 FRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTD 242
Query: 889 NIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYR 710
NIEE CATFA+RALG PL TTHQIDNCTEGCVV ARTKD+CS FH IREK+V+KLY
Sbjct: 243 NIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYL 302
Query: 709 ALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKV 530
ALAA+P+P GIITHYMRP N+APRL+SED I GWHLCQLEVLEC+++PWP + + V
Sbjct: 303 ALAASPLPTGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCV 362
Query: 529 EDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFG 350
EDCGWPS+ AYEC +NLLTGKTHQIRAQFAA P+IGDSMY P +A ++NP ++PFG
Sbjct: 363 EDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFG 422
Query: 349 GSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
K++ SE EK A+ W+AQHGKEP+ AIGLQA ISW++ YEAG PWWR
Sbjct: 423 KYKKDFSSESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 477
>ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542359|gb|EEF43901.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 395
Score = 597 bits (1540), Expect = e-168
Identities = 272/393 (69%), Positives = 326/393 (82%)
Frame = -2
Query: 1363 YSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALVCPKP 1184
Y RLLPCPS N+ PR+EHLVVLEEG +LDYI KAL+LPPLFVADL+HFGAVHYALVCP+P
Sbjct: 3 YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQP 62
Query: 1183 PPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKTFRVTDANQFVEAGTYLRVHVHP 1004
PPT+TPEQ ++++E T PSVLKKR+SIKGKTVREAQKTFRV+ +QF+E GTYLRV+VHP
Sbjct: 63 PPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHP 122
Query: 1003 KRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTADNIEECCATFASRALGFDAPLRT 824
+RFPRCYEIDW SRIIAVT+++V+LDKPA TSVGGT +NIEE CATFA+RALG PL+T
Sbjct: 123 RRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIPLKT 182
Query: 823 THQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYRALAAAPVPIGIITHYMRPTNVA 644
THQIDNCTEGCVV ART ++C FH IRE +V+KLY ALAA PVP+G+ITHYMRP N+
Sbjct: 183 THQIDNCTEGCVVLARTNEYCPVFHGKIRENKVKKLYLALAACPVPVGVITHYMRPGNIP 242
Query: 643 PRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKVEDCGWPSKRVAYECTVNLLTGK 464
PRLVSE+ I GW+LCQLEVLEC++VPWP + + VEDCGWPSK AYEC +NLLTG+
Sbjct: 243 PRLVSEEFIEGWYLCQLEVLECRKVPWPDTVTEEKYSVEDCGWPSKDFAYECKINLLTGR 302
Query: 463 THQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFGGSCKEYESEDEKMAAIEEWIAQ 284
THQIRAQ AA G P++GDSMY P +A MANP V+PFG K+Y E+++ + EW+ +
Sbjct: 303 THQIRAQLAACGAPLVGDSMYMPAAIAEMANPGVNPFGKHKKQYTGENDESMGVAEWVER 362
Query: 283 HGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
HGKEP+ AIGLQA ISW ++ Y+AG PWWR
Sbjct: 363 HGKEPSIAIGLQACEISWGDSKHIYKAGPPWWR 395
>ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Solanum tuberosum] gi|565362724|ref|XP_006348095.1|
PREDICTED: RNA pseudouridine synthase 6,
chloroplastic-like isoform X2 [Solanum tuberosum]
Length = 483
Score = 597 bits (1538), Expect = e-168
Identities = 277/420 (65%), Positives = 341/420 (81%), Gaps = 1/420 (0%)
Frame = -2
Query: 1441 KTYIAQST-LVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISK 1265
+++ QST L S+ +NG+ Y RL+PCP N PR+EHLVV +EG +L+YI K
Sbjct: 64 RSFSCQSTALSDISSTSHTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVLEYICK 123
Query: 1264 ALNLPPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVR 1085
AL+LPPL+V DL+ FGAV+YALVCPKPPPT++PEQ ++Y+EVT+PS+L++R+SIKGKTVR
Sbjct: 124 ALDLPPLYVEDLIQFGAVYYALVCPKPPPTASPEQIKVYEEVTDPSILRQRTSIKGKTVR 183
Query: 1084 EAQKTFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSV 905
EAQKTF++T A++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTD +V+LDKPA TSV
Sbjct: 184 EAQKTFKITRADEIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSV 243
Query: 904 GGTADNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQV 725
GGT DNIEE CATFA+RALGF APL TTHQIDNCTEGCVV AR+K++CS FH IREK+V
Sbjct: 244 GGTTDNIEESCATFATRALGFSAPLLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKV 303
Query: 724 RKLYRALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVF 545
+KLY ALAAAPVPIGI+THYMRP N+APRLVSED + GW LCQLEVLECK+VPWP++E+
Sbjct: 304 KKLYLALAAAPVPIGILTHYMRPINMAPRLVSEDFVKGWLLCQLEVLECKKVPWPSSEIQ 363
Query: 544 KNHKVEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPS 365
+ + +EDCGW K AYEC +NLLTG+THQIRAQ AA P++GDSMY P +A + P
Sbjct: 364 RTYNLEDCGWALKDFAYECQINLLTGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPG 423
Query: 364 VDPFGGSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
+PFG + K Y +E++K AI+EWIAQHGKEP+ A+GLQA ISW++ Y A PWWR
Sbjct: 424 SNPFGKNKKLYSNENDKSLAIDEWIAQHGKEPSVAVGLQACQISWDDGQHCYGARLPWWR 483
>ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Solanum
lycopersicum]
Length = 448
Score = 596 bits (1536), Expect = e-167
Identities = 277/420 (65%), Positives = 340/420 (80%), Gaps = 1/420 (0%)
Frame = -2
Query: 1441 KTYIAQST-LVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISK 1265
K++ QST L ++ +NG+ Y RL+PCP N PR+EHLVV +EG +++YI K
Sbjct: 29 KSFCCQSTALSDINSTSHTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVVEYICK 88
Query: 1264 ALNLPPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVR 1085
AL+LPPL+V DL+ FGAV+YALVCPKPPPT++PEQ ++Y+EVT+PSVL+KR+SIKGKTVR
Sbjct: 89 ALDLPPLYVEDLIQFGAVYYALVCPKPPPTASPEQIKVYEEVTDPSVLRKRTSIKGKTVR 148
Query: 1084 EAQKTFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSV 905
EAQKTF++T A++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTD +V+LDKPA TSV
Sbjct: 149 EAQKTFKITRADEIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSV 208
Query: 904 GGTADNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQV 725
GGT DNIEE CATFA+RALGF APL TTHQIDNCTEGCVV AR+K++CS FH IREK+V
Sbjct: 209 GGTTDNIEESCATFATRALGFSAPLLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKV 268
Query: 724 RKLYRALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVF 545
RKLY ALAAAPVPIGI+THYMRP N+APRLVS D + GW LCQLEVLEC++VPWP++E+
Sbjct: 269 RKLYLALAAAPVPIGILTHYMRPINMAPRLVSRDFVKGWLLCQLEVLECQKVPWPSSEIQ 328
Query: 544 KNHKVEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPS 365
+ + +EDCGW K AYEC +NLLTG+THQIRAQ AA P++GDSMY P +A + P
Sbjct: 329 RTYNLEDCGWALKDYAYECQINLLTGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPG 388
Query: 364 VDPFGGSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
+PFG + K Y +E++K AI+EWIAQHGKEP+ A+GLQA ISW++ Y A PWWR
Sbjct: 389 SNPFGKNKKLYSNENDKSLAIDEWIAQHGKEPSVAVGLQACQISWDDGQHCYGARMPWWR 448
>ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Glycine max]
Length = 478
Score = 593 bits (1528), Expect = e-166
Identities = 277/415 (66%), Positives = 330/415 (79%)
Frame = -2
Query: 1429 AQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLP 1250
A+ A L + ++ + +Y RLLPCPSH PRIEHLVV E G +L++I KAL+LP
Sbjct: 63 AEFLTTDAGILNATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLP 122
Query: 1249 PLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQKT 1070
PL+V+DL+ FGAV+YALVCP+PPP +T EQ +++KEVTEPSVL+KR+SIKGKTVREAQKT
Sbjct: 123 PLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKT 182
Query: 1069 FRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTAD 890
FRVT +QFVE GTYLRVHVHPKR PRCYEIDW SRII V +++V+LDKPA TSVGGT D
Sbjct: 183 FRVTHVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTD 242
Query: 889 NIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLYR 710
NIEE CATFA+RALG PL TTHQIDNCTEGCVV ARTK++CS FH IREK+V+K Y
Sbjct: 243 NIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYL 302
Query: 709 ALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHKV 530
ALAA P+P GIITHYMRP ++APRL+SED I GWHLCQLEVLEC++VPWPA + + +
Sbjct: 303 ALAAFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCI 362
Query: 529 EDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPFG 350
EDCGWPS+ AYEC +NLLTGKTHQIRAQFAA P+IGDSMY P +A M+NP ++PFG
Sbjct: 363 EDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFG 422
Query: 349 GSCKEYESEDEKMAAIEEWIAQHGKEPNAAIGLQASHISWNNANCSYEAGDPWWR 185
K++ SE EK A+ WIAQHGKEP+ AIGLQA ISW++ YEA PWWR
Sbjct: 423 KYKKDFSSESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 477
>ref|XP_006413737.1| hypothetical protein EUTSA_v10025093mg [Eutrema salsugineum]
gi|557114907|gb|ESQ55190.1| hypothetical protein
EUTSA_v10025093mg [Eutrema salsugineum]
Length = 475
Score = 588 bits (1517), Expect = e-165
Identities = 277/419 (66%), Positives = 330/419 (78%), Gaps = 3/419 (0%)
Frame = -2
Query: 1432 IAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNL 1253
+ Q+ +TL S T G EY+RL+PCP+ + RIEH+VVLE+ + DYI K L+L
Sbjct: 58 LLQTNSPNQTTLSSSS-TTGCIEYTRLMPCPAQSYPFRIEHMVVLEDVLVADYICKKLDL 116
Query: 1252 PPLFVADLVHFGAVHYALVCPKPPPTSTPEQFQIYKEVTEPSVLKKRSSIKGKTVREAQK 1073
PPL+VADL+ FGA+HYALVCPKPPPT+TPEQ ++++EVT PSVL KRSSIKGKTVREAQK
Sbjct: 117 PPLYVADLIQFGAIHYALVCPKPPPTATPEQIKLFEEVTSPSVLSKRSSIKGKTVREAQK 176
Query: 1072 TFRVTDANQFVEAGTYLRVHVHPKRFPRCYEIDWNSRIIAVTDTFVILDKPAATSVGGTA 893
TFRVT NQ+VEAGTYLRVHVHPKR PRCYEIDW SRIIAVTD++V+LDKPA T+VGGT
Sbjct: 177 TFRVTHTNQYVEAGTYLRVHVHPKRSPRCYEIDWKSRIIAVTDSYVVLDKPAGTTVGGTM 236
Query: 892 DNIEECCATFASRALGFDAPLRTTHQIDNCTEGCVVFARTKDFCSEFHSMIREKQVRKLY 713
DNIEE CATFASRAL PL+TTHQ+DNCTEGCVVFARTK++C FH+ I+ K+V+KLY
Sbjct: 237 DNIEETCATFASRALDLPEPLKTTHQVDNCTEGCVVFARTKEYCPVFHTKIKNKEVKKLY 296
Query: 712 RALAAAPVPIGIITHYMRPTNVAPRLVSEDPIGGWHLCQLEVLECKEVPWPANEVFKNHK 533
RALAAAP+P G+I+HYMRP N APRLVSEDPI GWHLCQLE+LECK++PWP
Sbjct: 297 RALAAAPLPSGVISHYMRPVNRAPRLVSEDPIKGWHLCQLEILECKKIPWPDAATEAKQD 356
Query: 532 VEDCGWPSKRVAYECTVNLLTGKTHQIRAQFAAIGGPIIGDSMYTPPVMARMANPSVDPF 353
++DCGW SK AYECT+NLLTGKTHQIRAQ AA G P++GDSMY P +A ANP ++P+
Sbjct: 357 IDDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAETANPEINPY 416
Query: 352 GGSCKEYE-SEDEKMAAIEEWIAQHGKEPNAAIGLQASHISW--NNANCSYEAGDPWWR 185
G + K Y E++K A+ EWI HGKEP IGLQA ISW ++ YEAG PWWR
Sbjct: 417 GKAKKHYTMEENDKETAVAEWIDMHGKEPRVGIGLQACQISWEDDDGEHFYEAGTPWWR 475