BLASTX nr result
ID: Zingiber24_contig00031389
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00031389
(321 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi... 127 2e-27
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi... 125 4e-27
gb|ESW29575.1| hypothetical protein PHAVU_002G081200g [Phaseolus... 120 2e-25
gb|EOY01760.1| Pentatricopeptide repeat-containing protein [Theo... 119 3e-25
gb|EMJ23574.1| hypothetical protein PRUPE_ppa004015mg [Prunus pe... 119 3e-25
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t... 116 3e-24
ref|XP_004490153.1| PREDICTED: pentatricopeptide repeat-containi... 115 5e-24
gb|EXB65077.1| hypothetical protein L484_004253 [Morus notabilis] 111 1e-22
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 107 2e-21
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi... 107 2e-21
ref|XP_006344328.1| PREDICTED: pentatricopeptide repeat-containi... 105 5e-21
ref|XP_004237221.1| PREDICTED: pentatricopeptide repeat-containi... 105 6e-21
ref|XP_004491829.1| PREDICTED: pentatricopeptide repeat-containi... 95 8e-18
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi... 95 1e-17
gb|EXB53748.1| hypothetical protein L484_022405 [Morus notabilis] 94 1e-17
ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containi... 94 2e-17
ref|XP_002892433.1| pentatricopeptide repeat-containing protein ... 93 4e-17
ref|XP_006475804.1| PREDICTED: pentatricopeptide repeat-containi... 92 5e-17
ref|XP_006450982.1| hypothetical protein CICLE_v10010823mg [Citr... 92 5e-17
gb|AEP33758.1| organelle transcript processing 82, partial [Barb... 92 5e-17
>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 127 bits (319), Expect = 2e-27
Identities = 61/105 (58%), Positives = 78/105 (74%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YTLPYVLKACAGL+ G H ++KLGF+ D FV NTL + ++ G+ +AR +FD
Sbjct: 106 YTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTL-IAMYSSFGNVRAARCIFD 164
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
+P AVSWTVMISGY ++GDVE AR+LFDE+P+KD GIWG+II
Sbjct: 165 EMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSII 209
>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 125 bits (315), Expect = 4e-27
Identities = 60/105 (57%), Positives = 77/105 (73%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT+PYVLKACA L+D G VH ++ KLG D FV N+L + CG D ++AR VFD
Sbjct: 106 YTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCG-DVIAARHVFD 164
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
+P+ AVSW+VMISGY ++GDV++ARL FDE+P KD GIWGA+I
Sbjct: 165 EMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMI 209
>gb|ESW29575.1| hypothetical protein PHAVU_002G081200g [Phaseolus vulgaris]
Length = 517
Score = 120 bits (300), Expect = 2e-25
Identities = 60/105 (57%), Positives = 73/105 (69%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT PYVLKACA L G VH ++ K G D FV N+L + CG D V+AR VFD
Sbjct: 106 YTTPYVLKACAALHSRSLGQMVHGYSSKAGLVYDIFVGNSLMAMYSVCG-DVVAARYVFD 164
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
IP+ AVSW+VMISGY ++GDV++ARL FDE+P KD GIWGA+I
Sbjct: 165 EIPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMI 209
>gb|EOY01760.1| Pentatricopeptide repeat-containing protein [Theobroma cacao]
Length = 523
Score = 119 bits (299), Expect = 3e-25
Identities = 63/106 (59%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVS-ARQVF 178
YTLPYVLKACA L+ G V+ H +KLGF D FV N AL+ C D V AR +F
Sbjct: 106 YTLPYVLKACAKLQYFYFGELVYGHCLKLGFVFDIFVGN--ALIAMFCAFDNVKVARYIF 163
Query: 179 DGIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
D IP D VSWTVMISGYG++GD++ ARLLFDE+ +KD GIWGA+I
Sbjct: 164 DEIPWPDFVSWTVMISGYGKIGDIDTARLLFDEASVKDAGIWGAMI 209
>gb|EMJ23574.1| hypothetical protein PRUPE_ppa004015mg [Prunus persica]
Length = 535
Score = 119 bits (299), Expect = 3e-25
Identities = 58/105 (55%), Positives = 76/105 (72%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YTLPYVLKACA L+ + G VH ++KLGF +D FV N+L +V + D +AR +FD
Sbjct: 110 YTLPYVLKACARLQSSCLGELVHGCSLKLGFVSDIFVGNSL-IVMYCAFDDMKAARHIFD 168
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
IP AVSWTVMISG+ + GD++ ARL FDE+P++D GIWGA+I
Sbjct: 169 EIPSLSAVSWTVMISGHSKAGDLDTARLFFDEAPVRDRGIWGAMI 213
>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 525
Score = 116 bits (291), Expect = 3e-24
Identities = 56/105 (53%), Positives = 73/105 (69%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT+PYVLKAC D G +H ++ KLG D +V N+L + + GD V+AR VFD
Sbjct: 108 YTIPYVLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNSL-MAMYCVFGDVVAARYVFD 166
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
IP + VSW+VMISGY ++GDV++ARL FDE+P KD GIWGA+I
Sbjct: 167 EIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMI 211
>ref|XP_004490153.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cicer arietinum]
Length = 523
Score = 115 bits (289), Expect = 5e-24
Identities = 59/105 (56%), Positives = 73/105 (69%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT+PYVLKACA L D G VH + KLG D FV N+L + + GD V+AR VFD
Sbjct: 108 YTVPYVLKACAALHDCSLGKLVHGYGSKLGLVFDIFVGNSL-MSMYVVFGDVVAARYVFD 166
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
IP VSW+VMISGY ++G+V++ARL FDE+P KD GIWGA+I
Sbjct: 167 EIPCLSLVSWSVMISGYAKMGNVDSARLFFDEAPEKDKGIWGAMI 211
>gb|EXB65077.1| hypothetical protein L484_004253 [Morus notabilis]
Length = 508
Score = 111 bits (277), Expect = 1e-22
Identities = 55/105 (52%), Positives = 73/105 (69%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YTLPYVLKAC+ L+ A G VH H +K G D FV N+L +V ++ + +ARQVFD
Sbjct: 90 YTLPYVLKACSRLQSACLGVSVHGHGLKSGLAFDLFVGNSL-IVMYSEFRNMEAARQVFD 148
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
+P VSW VMISGYG++G+V+ RL FD +P++D GIWGA+I
Sbjct: 149 EMPSLSTVSWMVMISGYGKVGEVDKERLFFDLAPVRDRGIWGAMI 193
>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 107 bits (267), Expect = 2e-21
Identities = 58/105 (55%), Positives = 72/105 (68%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YTLPYVLKA A + + G +HA TIKLG + FV N+L LV + + SARQVFD
Sbjct: 106 YTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSL-LVMYRSFDNMRSARQVFD 164
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
+P+ AVSWTVMI GY +GDV+ AR LFD + +KD GIWGA+I
Sbjct: 165 EMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMI 209
>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 107 bits (267), Expect = 2e-21
Identities = 58/105 (55%), Positives = 72/105 (68%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YTLPYVLKA A + + G +HA TIKLG + FV N+L LV + + SARQVFD
Sbjct: 106 YTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSL-LVMYRSFDNMRSARQVFD 164
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
+P+ AVSWTVMI GY +GDV+ AR LFD + +KD GIWGA+I
Sbjct: 165 EMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMI 209
>ref|XP_006344328.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Solanum tuberosum]
Length = 530
Score = 105 bits (263), Expect = 5e-21
Identities = 54/105 (51%), Positives = 67/105 (63%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YTLPYVLKAC +K G VH +KLGF DTFV N+L + + C + +AR VF
Sbjct: 108 YTLPYVLKACGRMKSFHLGELVHGQILKLGFLIDTFVGNSL-IGFYTCFDNVEAARSVFY 166
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
IP VSWTV+I GY + GDV ARL+FDE +KD G+WG +I
Sbjct: 167 EIPCNCVVSWTVLICGYAKTGDVYEARLIFDECLVKDRGVWGCMI 211
>ref|XP_004237221.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Solanum lycopersicum]
Length = 586
Score = 105 bits (262), Expect = 6e-21
Identities = 54/105 (51%), Positives = 67/105 (63%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YTLPYVLKAC +K G VH +KLGF DTFV N+L + + C + +AR VF
Sbjct: 108 YTLPYVLKACGRMKSLHLGELVHGQILKLGFLIDTFVGNSL-IGFYTCFDNVEAARSVFY 166
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
IP VSWTV+I GY + GDV ARL+FDE +KD G+WG +I
Sbjct: 167 EIPCNCVVSWTVLICGYAKRGDVYEARLVFDECLVKDRGVWGCMI 211
>ref|XP_004491829.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cicer arietinum]
Length = 521
Score = 95.1 bits (235), Expect = 8e-18
Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 30/135 (22%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACG----------- 148
YT P+VLKAC L G+ VH ++ GF ++TFV N L + CG
Sbjct: 110 YTFPFVLKACTKLIWVNTGSAVHGLAVRFGFCSNTFVRNALLVFHAKCGDLKVATSIFDD 169
Query: 149 -------------------GDAVSARQVFDGIPQRDAVSWTVMISGYGQLGDVENARLLF 271
GD AR++FD +P+RD VSW VMI+GY + G++E+AR+LF
Sbjct: 170 SCKGDVVAWSSLIAGYAKRGDLKVARKLFDEMPERDLVSWNVMITGYAKQGEMESARMLF 229
Query: 272 DESPLKDHGIWGAII 316
DE+P+KD W A+I
Sbjct: 230 DEAPVKDVVSWNAVI 244
>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 94.7 bits (234), Expect = 1e-17
Identities = 48/105 (45%), Positives = 69/105 (65%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT P++LK+CA L A G Q+HAH +KLGF +D F+ +T + +A G+ +A+ VFD
Sbjct: 130 YTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFI-HTSLINMYAQSGEMNNAQLVFD 188
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
RDA+S+T +I+GY G ++ AR LFDE P+KD W A+I
Sbjct: 189 QSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMI 233
>gb|EXB53748.1| hypothetical protein L484_022405 [Morus notabilis]
Length = 531
Score = 94.4 bits (233), Expect = 1e-17
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 YTLPYVLKACAGLKD--AVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQV 175
YT P ++KAC L D + G VHAH +K GF D FV L + GD V+AR V
Sbjct: 113 YTFPPLIKACTILDDNSEITGRLVHAHVVKFGFRDDPFVSTALIEFYSSVVGDMVTARSV 172
Query: 176 FDGIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
FD P+RD V WT M GYG++GDV AR +FDE P ++ W A++
Sbjct: 173 FDECPKRDVVLWTAMADGYGKVGDVGRAREVFDEMPERNAVSWSAMM 219
>ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 93.6 bits (231), Expect = 2e-17
Identities = 48/104 (46%), Positives = 64/104 (61%)
Frame = +2
Query: 5 TLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDG 184
T P+VL+AC + GAQVHAH +K G +D FV N L + +CG V A +FDG
Sbjct: 114 TFPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGV-ASALFDG 172
Query: 185 IPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
+ DAV+W+ MI+G + GD+ AR LFDE P+KDH W +I
Sbjct: 173 RAREDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSWNVMI 216
>ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297338275|gb|EFH68692.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 741
Score = 92.8 bits (229), Expect = 4e-17
Identities = 48/105 (45%), Positives = 64/105 (60%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT P++LK+CA K G Q+H H +KLG+ D FV +L V + G AR+VFD
Sbjct: 135 YTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISV-YVQNGRLEDARKVFD 193
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
P RD VS+T +I GY G +E+A+ LFDE P+KD W A+I
Sbjct: 194 RSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMI 238
>ref|XP_006475804.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Citrus sinensis]
Length = 736
Score = 92.4 bits (228), Expect = 5e-17
Identities = 47/105 (44%), Positives = 68/105 (64%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT P++LK+CA + G Q+HAH +KLG +D FV +T + +A G+ SAR VF+
Sbjct: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV-HTSLINMYAQNGELESARLVFN 189
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
RDAVS+T +I+GY G +++AR LFDE P++D W A+I
Sbjct: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPVRDVVSWNAMI 234
>ref|XP_006450982.1| hypothetical protein CICLE_v10010823mg [Citrus clementina]
gi|557554208|gb|ESR64222.1| hypothetical protein
CICLE_v10010823mg [Citrus clementina]
Length = 736
Score = 92.4 bits (228), Expect = 5e-17
Identities = 47/105 (44%), Positives = 68/105 (64%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT P++LK+CA + G Q+HAH +KLG +D FV +T + +A G+ SAR VF+
Sbjct: 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFV-HTSLINMYAQNGELESARLVFN 189
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
RDAVS+T +I+GY G +++AR LFDE P++D W A+I
Sbjct: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPVRDVVSWNAMI 234
>gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 92.4 bits (228), Expect = 5e-17
Identities = 46/105 (43%), Positives = 66/105 (62%)
Frame = +2
Query: 2 YTLPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 181
YT P++LK+CA LK + G Q+H H +KLG+ D +V +T + + G A +VFD
Sbjct: 104 YTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYV-HTSLISMYVKNGRWKDAHKVFD 162
Query: 182 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAII 316
G RD VS+T +I+GY G +E+A+ +FDE P+KD W AII
Sbjct: 163 GSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAII 207