BLASTX nr result
ID: Zingiber24_contig00030641
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00030641
(206 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFK37154.1| unknown [Lotus japonicus] 127 1e-27
ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation spec... 127 2e-27
ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation spec... 125 6e-27
emb|CBI29772.3| unnamed protein product [Vitis vinifera] 125 6e-27
emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera] 125 6e-27
gb|ESW20533.1| hypothetical protein PHAVU_006G217100g [Phaseolus... 125 8e-27
gb|EMJ22659.1| hypothetical protein PRUPE_ppa020907mg, partial [... 125 8e-27
ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and... 125 8e-27
ref|XP_004485469.1| PREDICTED: cleavage and polyadenylation spec... 124 1e-26
ref|XP_006471216.1| PREDICTED: cleavage and polyadenylation spec... 123 2e-26
ref|XP_006431752.1| hypothetical protein CICLE_v10000468mg [Citr... 123 2e-26
ref|XP_004135521.1| PREDICTED: cleavage and polyadenylation spec... 122 4e-26
ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group] g... 122 4e-26
gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indi... 122 4e-26
gb|EXC33626.1| Cleavage and polyadenylation specificity factor s... 122 6e-26
ref|XP_006878663.1| hypothetical protein AMTR_s00011p00266610 [A... 122 6e-26
ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation spec... 121 8e-26
emb|CBI29794.3| unnamed protein product [Vitis vinifera] 121 8e-26
ref|XP_003592965.1| Cleavage and polyadenylation specificity fac... 120 1e-25
ref|XP_006431751.1| hypothetical protein CICLE_v10000467mg [Citr... 120 2e-25
>gb|AFK37154.1| unknown [Lotus japonicus]
Length = 315
Score = 127 bits (320), Expect = 1e-27
Identities = 58/65 (89%), Positives = 64/65 (98%)
Frame = -1
Query: 197 TATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPS 18
+ ++RE+DQLIVTPLGAGNEVGRSCVYMSY+GKTVLFDCGIHPAYSGMAALPYFDEIDPS
Sbjct: 12 SGSSREEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPS 71
Query: 17 TIDVL 3
T+DVL
Sbjct: 72 TVDVL 76
>ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I isoform X1 [Glycine max]
gi|571493830|ref|XP_006592669.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit 3-I isoform
X2 [Glycine max]
Length = 689
Score = 127 bits (319), Expect = 2e-27
Identities = 58/63 (92%), Positives = 63/63 (100%)
Frame = -1
Query: 191 TAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTI 12
++RE+DQLIVTPLGAGNEVGRSCVYMSY+GKTVLFDCGIHPAYSGMAALPYFDEIDPST+
Sbjct: 14 SSREEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPSTV 73
Query: 11 DVL 3
DVL
Sbjct: 74 DVL 76
>ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 125 bits (314), Expect = 6e-27
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = -1
Query: 197 TATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPS 18
++ RE DQLI+TPLGAGNEVGRSCVYMSY+GKT+LFDCGIHPAYSGMAALPYFDEIDPS
Sbjct: 15 SSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
Query: 17 TIDVL 3
TIDVL
Sbjct: 75 TIDVL 79
>emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 125 bits (314), Expect = 6e-27
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = -1
Query: 197 TATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPS 18
++ RE DQLI+TPLGAGNEVGRSCVYMSY+GKT+LFDCGIHPAYSGMAALPYFDEIDPS
Sbjct: 15 SSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
Query: 17 TIDVL 3
TIDVL
Sbjct: 75 TIDVL 79
>emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 125 bits (314), Expect = 6e-27
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = -1
Query: 197 TATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPS 18
++ RE DQLI+TPLGAGNEVGRSCVYMSY+GKT+LFDCGIHPAYSGMAALPYFDEIDPS
Sbjct: 8 SSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 67
Query: 17 TIDVL 3
TIDVL
Sbjct: 68 TIDVL 72
>gb|ESW20533.1| hypothetical protein PHAVU_006G217100g [Phaseolus vulgaris]
Length = 690
Score = 125 bits (313), Expect = 8e-27
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = -1
Query: 191 TAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTI 12
++RE+DQLIVTPLGAGNEVGRSCVYMSY+GK VLFDCGIHPAYSGMAALPYFDEIDPST+
Sbjct: 15 SSREEDQLIVTPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPSTV 74
Query: 11 DVL 3
DVL
Sbjct: 75 DVL 77
>gb|EMJ22659.1| hypothetical protein PRUPE_ppa020907mg, partial [Prunus persica]
Length = 600
Score = 125 bits (313), Expect = 8e-27
Identities = 57/64 (89%), Positives = 62/64 (96%)
Frame = -1
Query: 194 ATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPST 15
+ +REDD+LI+TPLGAGNEVGRSCVYMSY+GKTVLFDCGIHPAYSGMAALPYFDEIDPS
Sbjct: 16 SASREDDKLIITPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPSI 75
Query: 14 IDVL 3
IDVL
Sbjct: 76 IDVL 79
>ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-I-like [Cucumis sativus]
Length = 481
Score = 125 bits (313), Expect = 8e-27
Identities = 57/64 (89%), Positives = 62/64 (96%)
Frame = -1
Query: 194 ATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPST 15
++ RE+DQLI+TPLGAGNEVGRSCVYMSY+GK VLFDCGIHPAYSGMAALPYFDEIDPST
Sbjct: 16 SSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPST 75
Query: 14 IDVL 3
IDVL
Sbjct: 76 IDVL 79
>ref|XP_004485469.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cicer arietinum]
Length = 687
Score = 124 bits (312), Expect = 1e-26
Identities = 56/66 (84%), Positives = 64/66 (96%)
Frame = -1
Query: 200 ATATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDP 21
+ ++ +++DQLIVTPLGAGNEVGRSCVYMSY+GKTVLFDCGIHPAYSGMAALPYFDEIDP
Sbjct: 9 SVSSNKDEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDP 68
Query: 20 STIDVL 3
ST+DVL
Sbjct: 69 STVDVL 74
>ref|XP_006471216.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like isoform X1 [Citrus sinensis]
Length = 694
Score = 123 bits (309), Expect = 2e-26
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -1
Query: 188 AREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTID 9
+RE DQLI+TPLGAGNEVGRSCVYMSY+GKT+LFDCGIHPAYSGMAALPYFDEIDPS ID
Sbjct: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
Query: 8 VL 3
VL
Sbjct: 78 VL 79
>ref|XP_006431752.1| hypothetical protein CICLE_v10000468mg [Citrus clementina]
gi|557533874|gb|ESR44992.1| hypothetical protein
CICLE_v10000468mg [Citrus clementina]
Length = 694
Score = 123 bits (309), Expect = 2e-26
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -1
Query: 188 AREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTID 9
+RE DQLI+TPLGAGNEVGRSCVYMSY+GKT+LFDCGIHPAYSGMAALPYFDEIDPS ID
Sbjct: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
Query: 8 VL 3
VL
Sbjct: 78 VL 79
>ref|XP_004135521.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cucumis sativus]
Length = 392
Score = 122 bits (307), Expect = 4e-26
Identities = 56/64 (87%), Positives = 61/64 (95%)
Frame = -1
Query: 194 ATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPST 15
++ RE+DQLI+TPLGAGNEVGRSCVYMSY+ K VLFDCGIHPAYSGMAALPYFDEIDPST
Sbjct: 16 SSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFDEIDPST 75
Query: 14 IDVL 3
IDVL
Sbjct: 76 IDVL 79
>ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and
polyadenylation specifity factor protein [Oryza sativa
Japonica Group] gi|29126360|gb|AAO66552.1| putative
cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group] gi|108712151|gb|ABF99946.1|
Cleavage and polyadenylation specificity factor, 73 kDa
subunit, putative, expressed [Oryza sativa Japonica
Group] gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza
sativa Japonica Group] gi|125588676|gb|EAZ29340.1|
hypothetical protein OsJ_13407 [Oryza sativa Japonica
Group]
Length = 700
Score = 122 bits (307), Expect = 4e-26
Identities = 56/61 (91%), Positives = 60/61 (98%)
Frame = -1
Query: 185 REDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTIDV 6
RE DQLI+TPLGAGNEVGRSCVYMS++G+TVLFDCGIHPAYSGMAALPYFDEIDPSTIDV
Sbjct: 26 REGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPSTIDV 85
Query: 5 L 3
L
Sbjct: 86 L 86
>gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 122 bits (307), Expect = 4e-26
Identities = 56/61 (91%), Positives = 60/61 (98%)
Frame = -1
Query: 185 REDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTIDV 6
RE DQLI+TPLGAGNEVGRSCVYMS++G+TVLFDCGIHPAYSGMAALPYFDEIDPSTIDV
Sbjct: 26 REGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPSTIDV 85
Query: 5 L 3
L
Sbjct: 86 L 86
>gb|EXC33626.1| Cleavage and polyadenylation specificity factor subunit 3-I [Morus
notabilis]
Length = 693
Score = 122 bits (305), Expect = 6e-26
Identities = 54/62 (87%), Positives = 61/62 (98%)
Frame = -1
Query: 188 AREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTID 9
ARE+D+L++TPLGAGNEVGRSCVYMS++ KTVLFDCGIHPAYSGMAALPYFDEIDPST+D
Sbjct: 19 AREEDKLVITPLGAGNEVGRSCVYMSFKSKTVLFDCGIHPAYSGMAALPYFDEIDPSTVD 78
Query: 8 VL 3
VL
Sbjct: 79 VL 80
>ref|XP_006878663.1| hypothetical protein AMTR_s00011p00266610 [Amborella trichopoda]
gi|548832006|gb|ERM94808.1| hypothetical protein
AMTR_s00011p00266610 [Amborella trichopoda]
Length = 705
Score = 122 bits (305), Expect = 6e-26
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = -1
Query: 188 AREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTID 9
+RE DQLI+TPLGAGNEVGRSCV+MSY+ KTVLFDCGIHPAYSGMAALPYFDEIDPSTID
Sbjct: 18 SREGDQLIITPLGAGNEVGRSCVFMSYKNKTVLFDCGIHPAYSGMAALPYFDEIDPSTID 77
Query: 8 VL 3
VL
Sbjct: 78 VL 79
>ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 121 bits (304), Expect = 8e-26
Identities = 55/58 (94%), Positives = 58/58 (100%)
Frame = -1
Query: 176 DQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTIDVL 3
DQLI+TPLGAGNEVGRSCVYMSY+GKT+LFDCGIHPAYSGMAALPYFDEIDPSTIDVL
Sbjct: 21 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSTIDVL 78
>emb|CBI29794.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 121 bits (304), Expect = 8e-26
Identities = 55/58 (94%), Positives = 58/58 (100%)
Frame = -1
Query: 176 DQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTIDVL 3
DQLI+TPLGAGNEVGRSCVYMSY+GKT+LFDCGIHPAYSGMAALPYFDEIDPSTIDVL
Sbjct: 21 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSTIDVL 78
>ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula] gi|357445453|ref|XP_003593004.1|
Cleavage and polyadenylation specificity factor subunit
3-I [Medicago truncatula] gi|355482013|gb|AES63216.1|
Cleavage and polyadenylation specificity factor subunit
3-I [Medicago truncatula] gi|355482052|gb|AES63255.1|
Cleavage and polyadenylation specificity factor subunit
3-I [Medicago truncatula]
Length = 690
Score = 120 bits (302), Expect = 1e-25
Identities = 55/65 (84%), Positives = 59/65 (90%)
Frame = -1
Query: 197 TATAREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPS 18
T +DQLIVTPLGAGNEVGRSCVYM+Y+GKTVLFDCGIHP YSGMAALPYFDEIDPS
Sbjct: 13 TINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPS 72
Query: 17 TIDVL 3
T+DVL
Sbjct: 73 TVDVL 77
>ref|XP_006431751.1| hypothetical protein CICLE_v10000467mg [Citrus clementina]
gi|557533873|gb|ESR44991.1| hypothetical protein
CICLE_v10000467mg [Citrus clementina]
Length = 694
Score = 120 bits (301), Expect = 2e-25
Identities = 55/62 (88%), Positives = 58/62 (93%)
Frame = -1
Query: 188 AREDDQLIVTPLGAGNEVGRSCVYMSYRGKTVLFDCGIHPAYSGMAALPYFDEIDPSTID 9
+RE DQL + PLGAGNEVGRSCVYMSYRGKT+LFDCGIHPAYSGMAALPYFDEIDPS ID
Sbjct: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
Query: 8 VL 3
VL
Sbjct: 78 VL 79