BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00029993
         (1020 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japo...   314   4e-83
gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indi...   313   5e-83
gb|ACR37582.1| unknown [Zea mays]                                     313   9e-83
dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]    311   2e-82
ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   311   3e-82
gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilo...   310   4e-82
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   310   4e-82
gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Tritic...   310   6e-82
ref|XP_004956276.1| PREDICTED: RNA pseudouridine synthase 4, mit...   308   3e-81
ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit...   306   6e-81
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   306   6e-81
ref|XP_006651552.1| PREDICTED: RNA pseudouridine synthase 4, mit...   306   8e-81
ref|XP_004954753.1| PREDICTED: RNA pseudouridine synthase 4, mit...   305   2e-80
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           304   4e-80
gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus...   298   2e-78
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   297   4e-78
ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul...   296   7e-78
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   293   7e-77
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   292   2e-76
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   291   3e-76

>gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japonica Group]
          Length = 465

 Score =  314 bits (804), Expect = 4e-83
 Identities = 158/247 (63%), Positives = 200/247 (80%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SG+LVLGR Q ST++LH++FREKT+ AL++   GTQ  +QRKY+ALVIG
Sbjct: 221  PRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADALAD---GTQHVLQRKYVALVIG 277

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
            TPRHP+GL+SA LAKI+L+DGKSER+ I  +  + S   ALTEY++I S  QG+TWLELF
Sbjct: 278  TPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQDALTEYRVIESCPQGYTWLELF 337

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            P TGRKHQLRVHCA++LGTPIVGD KYGR+ + K  P+ LP+++ + E + K KLPFGL 
Sbjct: 338  PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKWMPLPLPRTIDE-ELLRKRKLPFGLV 396

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD--HDFSQVEKLNLVAPLPPHMQKS 303
            + GGSI+++ P++HLHCKQMVLP+VS+AL +LQS D   DFS +EKLN VAPLP HM+ S
Sbjct: 397  VGGGSIAEEQPQLHLHCKQMVLPDVSVALHRLQSSDVNPDFSDLEKLNFVAPLPLHMRLS 456

Query: 302  WEILNSL 282
            WEIL S+
Sbjct: 457  WEILKSV 463


>gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indica Group]
          Length = 465

 Score =  313 bits (803), Expect = 5e-83
 Identities = 157/247 (63%), Positives = 200/247 (80%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SG+LVLGR Q ST++LH++FREKT+ AL++   GTQ  +QRKY+ALVIG
Sbjct: 221  PRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADALAD---GTQHVLQRKYVALVIG 277

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
            TPRHP+GL+SA LAKI+L+DGKSER+ +  +  + S   ALTEY++I S  QG+TWLELF
Sbjct: 278  TPRHPKGLLSAPLAKILLQDGKSERLTVRASSNAASVQDALTEYRVIESCPQGYTWLELF 337

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            P TGRKHQLRVHCA++LGTPIVGD KYGR+ + K  P+ LP+++ + E + K KLPFGL 
Sbjct: 338  PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKWMPLPLPRTIDE-ELLRKRKLPFGLV 396

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD--HDFSQVEKLNLVAPLPPHMQKS 303
            + GGSI+++ P++HLHCKQMVLP+VS+AL +LQS D   DFS +EKLN VAPLP HM+ S
Sbjct: 397  VGGGSIAEEQPQLHLHCKQMVLPDVSVALHRLQSSDVNPDFSDLEKLNFVAPLPLHMRLS 456

Query: 302  WEILNSL 282
            WEIL S+
Sbjct: 457  WEILKSV 463


>gb|ACR37582.1| unknown [Zea mays]
          Length = 272

 Score =  313 bits (801), Expect = 9e-83
 Identities = 153/247 (61%), Positives = 198/247 (80%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SGVLVLGRTQ S +++H++FREKT+ AL +   GTQ+ +QRKY+ALVIG
Sbjct: 28   PRLVHRLDRDCSGVLVLGRTQFSASLMHAIFREKTADALGD---GTQQVLQRKYVALVIG 84

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
             PRHP+GL+SA LAK+VL+DG+SER+ +     + S   ALTEY++I S  QG+TWLELF
Sbjct: 85   RPRHPKGLLSAPLAKVVLQDGRSERLTVCAGSNTASVQDALTEYRVIESFPQGYTWLELF 144

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            P TGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+ +PQ++ K E + K KLPFGL 
Sbjct: 145  PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMPLPMPQTIDK-EMLKKRKLPFGLT 203

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSK--DHDFSQVEKLNLVAPLPPHMQKS 303
            L GGS++++ P++HLHCKQM+LP++S A+QQL+S   DHDFS +EKL+ VAPLP HMQ S
Sbjct: 204  LGGGSVAEQQPQLHLHCKQMILPDISAAMQQLRSSDADHDFSDLEKLSFVAPLPLHMQLS 263

Query: 302  WEILNSL 282
            W+IL S+
Sbjct: 264  WKILLSV 270


>dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 472

 Score =  311 bits (798), Expect = 2e-82
 Identities = 155/247 (62%), Positives = 201/247 (81%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SGVLVLGRTQ S ++LH++FREKT+ AL++   GTQ+ +QRKY+ALV+G
Sbjct: 228  PRLVHRLDRDCSGVLVLGRTQLSASILHAIFREKTADALAD---GTQQVLQRKYVALVMG 284

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
            TPRHP+GL+SA LAK++L+DGKSER+ +     +TS   ALTEY++I S  QGFTWLELF
Sbjct: 285  TPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNTTSVQDALTEYRVIESCPQGFTWLELF 344

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            PLTGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+ + Q+V K E + K++LPFGL 
Sbjct: 345  PLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQDWTPLPVSQTVDK-ELLRKQRLPFGLV 403

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSK--DHDFSQVEKLNLVAPLPPHMQKS 303
            L GGSI+++ P++HLHCKQM+LP++S A+Q LQS+  D DFS +EKL+ VAPLP HM+ S
Sbjct: 404  LGGGSIAEQQPQLHLHCKQMMLPDISAAVQGLQSEDADRDFSDLEKLSFVAPLPLHMRLS 463

Query: 302  WEILNSL 282
            WE+L S+
Sbjct: 464  WEVLKSV 470


>ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like
            [Brachypodium distachyon]
          Length = 465

 Score =  311 bits (797), Expect = 3e-82
 Identities = 154/247 (62%), Positives = 198/247 (80%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SGVLVLGRTQ S ++LH++FREKT+ AL++   GTQ+ +QRKY+ALVIG
Sbjct: 221  PRLVHRLDRDCSGVLVLGRTQLSASILHAIFREKTADALAD---GTQQVLQRKYVALVIG 277

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
            TPRH +GL+SA LAK++L+DGKSER+ +     +TS   ALTEY++I S  QGFTWLELF
Sbjct: 278  TPRHSKGLLSAPLAKVLLQDGKSERLTVKAGPNTTSVQDALTEYRVIESCPQGFTWLELF 337

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            PLTGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+  PQ++ + E + K +LPFGL 
Sbjct: 338  PLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWSPLPAPQAI-EEELLKKRRLPFGLV 396

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSK--DHDFSQVEKLNLVAPLPPHMQKS 303
            L GGS+ ++ P++HLHCKQMVLP++S A+Q LQS+  D DFS +EKL+ VAPLP HM+ S
Sbjct: 397  LGGGSVVEEQPQLHLHCKQMVLPDISAAVQGLQSEDADRDFSDLEKLSFVAPLPQHMRLS 456

Query: 302  WEILNSL 282
            WE+L S+
Sbjct: 457  WEVLKSV 463


>gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilops tauschii]
          Length = 468

 Score =  310 bits (795), Expect = 4e-82
 Identities = 153/247 (61%), Positives = 202/247 (81%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SGVLVLGRTQ S ++LH++FREKT+ AL++   GTQ+ +QRKY+ALV+G
Sbjct: 224  PRLVHRLDRDCSGVLVLGRTQLSASILHAIFREKTADALAD---GTQQVLQRKYVALVMG 280

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
            TPRHP+GL+SA LAK++L+DGKSER+ +     +TS   ALTEY++I S  +GFTWLELF
Sbjct: 281  TPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNTTSVQDALTEYRVIESCPRGFTWLELF 340

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            PLTGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+ +PQ+V + E + K++LPFGL 
Sbjct: 341  PLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQDWTPLPVPQTVDE-ELLRKQRLPFGLV 399

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD--HDFSQVEKLNLVAPLPPHMQKS 303
            L GGS++++ P++HLHCKQM+LP++S A+Q LQS+D   DFS +EKL+ VAPLP HM+ S
Sbjct: 400  LGGGSVAEEQPQLHLHCKQMMLPDISAAVQGLQSEDAERDFSGLEKLSFVAPLPLHMRLS 459

Query: 302  WEILNSL 282
            WE+L S+
Sbjct: 460  WEVLKSV 466


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  310 bits (795), Expect = 4e-82
 Identities = 157/249 (63%), Positives = 196/249 (78%), Gaps = 4/249 (1%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 840
            PPRLVHRLDRDSSG+L++GRTQ+S  +LHS+FREKT GA +NDI   +R +QR+Y ALVI
Sbjct: 229  PPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVI 288

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G+PR PRGLISA L K+V++DGKSERI I DN ++ SS HA+TEY++I SS  G+TWLEL
Sbjct: 289  GSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLEL 348

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKS--EDIPKEKL-P 489
             PLTGRKHQLRVHCA++LGTPIVGD KYG + + K + +    ++ K+  E++   K  P
Sbjct: 349  SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQL-FQSNIEKNLDENLSNRKTHP 407

Query: 488  FGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHM 312
            FGL+L  GSI DK P +HLHCKQMVLPNVS+ALQ LQ S + D S++E L  VAPLP HM
Sbjct: 408  FGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHM 467

Query: 311  QKSWEILNS 285
            Q+SW+ILNS
Sbjct: 468  QRSWDILNS 476


>gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Triticum urartu]
          Length = 468

 Score =  310 bits (794), Expect = 6e-82
 Identities = 153/247 (61%), Positives = 201/247 (81%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SGVLVLGRTQ S ++LH++FREKT+ AL++   GTQ+ +QRKY+ALV+G
Sbjct: 224  PRLVHRLDRDCSGVLVLGRTQLSASILHAIFREKTADALAD---GTQQVLQRKYVALVMG 280

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
            TPRHP+GL+SA LAK++L+DGKSER+ +     +TS   ALTEY++I S  +GFTWLELF
Sbjct: 281  TPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNTTSVQDALTEYRVIESCPRGFTWLELF 340

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            PLTGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+ +PQ+V + E + K++LPFGL 
Sbjct: 341  PLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQDWTPLPVPQTVDE-ELLRKQRLPFGLV 399

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD--HDFSQVEKLNLVAPLPPHMQKS 303
            L GGS++++ P++HLHCKQM+LP++S A Q LQS+D   DFS +EKL+ VAPLP HM+ S
Sbjct: 400  LGGGSVAEEQPQLHLHCKQMMLPDISTAFQGLQSEDAERDFSGLEKLSFVAPLPLHMRLS 459

Query: 302  WEILNSL 282
            WE+L S+
Sbjct: 460  WEVLKSV 466


>ref|XP_004956276.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Setaria
            italica]
          Length = 465

 Score =  308 bits (788), Expect = 3e-81
 Identities = 152/247 (61%), Positives = 196/247 (79%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SGVLVLGRTQ S +++H++FREKT+ AL++   GTQ+ +QRKY+ALVIG
Sbjct: 221  PRLVHRLDRDCSGVLVLGRTQLSASIMHAIFREKTADALAD---GTQQVLQRKYVALVIG 277

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
             PRHP+GL+SA LAKIVL+DGKSER+ +       S   ALTEY++I S  QG+TWLELF
Sbjct: 278  RPRHPKGLLSAPLAKIVLQDGKSERLTVCAGSNPASVQDALTEYRVIESCPQGYTWLELF 337

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            P TGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+ +PQ++   E + K KLPFGL 
Sbjct: 338  PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMPLPIPQAM-DVEMLKKRKLPFGLA 396

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD--HDFSQVEKLNLVAPLPPHMQKS 303
            L GGS+++  P++HLHCKQM+LP++S A+Q+LQS +  H+FS +EKL+ VAPLP HM+ S
Sbjct: 397  LGGGSVAEDQPQLHLHCKQMILPDISAAMQRLQSSESNHNFSDLEKLSFVAPLPLHMRLS 456

Query: 302  WEILNSL 282
            WEIL S+
Sbjct: 457  WEILKSV 463


>ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 429

 Score =  306 bits (785), Expect = 6e-81
 Identities = 155/246 (63%), Positives = 194/246 (78%), Gaps = 2/246 (0%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 840
            PPRLVHRLDRD SG+LV+GRT +ST VLHS+FREKTS A S+DI   +R +QR+Y ALV+
Sbjct: 184  PPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSRA-SDDIGKEKRILQRRYWALVL 242

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G PR P+GL++ASL K+V+++G+S+RI I DN    SS HA+TEY++I SSSQG+TWLEL
Sbjct: 243  GCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLEL 302

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQ-SVTKSEDIPKEKLPFG 483
             PLTGRKHQLRVHCA++LGTPIVGD KYG + + K     LP    ++ E + +EKLPFG
Sbjct: 303  TPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEKLPFG 362

Query: 482  LNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKDH-DFSQVEKLNLVAPLPPHMQK 306
            LNLN GSIS+  PR+HLHCKQMVLPN+S ALQ +QS    D S VE+L LVA LPP+MQ+
Sbjct: 363  LNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQR 422

Query: 305  SWEILN 288
            SW++ N
Sbjct: 423  SWDVTN 428


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 427

 Score =  306 bits (785), Expect = 6e-81
 Identities = 155/246 (63%), Positives = 194/246 (78%), Gaps = 2/246 (0%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 840
            PPRLVHRLDRD SG+LV+GRT +ST VLHS+FREKTS A S+DI   +R +QR+Y ALV+
Sbjct: 182  PPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSRA-SDDIGKEKRILQRRYWALVL 240

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G PR P+GL++ASL K+V+++G+S+RI I DN    SS HA+TEY++I SSSQG+TWLEL
Sbjct: 241  GCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLEL 300

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQ-SVTKSEDIPKEKLPFG 483
             PLTGRKHQLRVHCA++LGTPIVGD KYG + + K     LP    ++ E + +EKLPFG
Sbjct: 301  TPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEKLPFG 360

Query: 482  LNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKDH-DFSQVEKLNLVAPLPPHMQK 306
            LNLN GSIS+  PR+HLHCKQMVLPN+S ALQ +QS    D S VE+L LVA LPP+MQ+
Sbjct: 361  LNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQR 420

Query: 305  SWEILN 288
            SW++ N
Sbjct: 421  SWDVTN 426


>ref|XP_006651552.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Oryza
            brachyantha]
          Length = 447

 Score =  306 bits (784), Expect = 8e-81
 Identities = 153/246 (62%), Positives = 195/246 (79%), Gaps = 1/246 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SGVLVLGR Q ST +LH+ FREKT+ AL++   GTQ  +QRKYLALVIG
Sbjct: 204  PRLVHRLDRDCSGVLVLGRNQRSTTMLHATFREKTADALAD---GTQHVLQRKYLALVIG 260

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
            TPRHP+GL+SA LAK++L+DGKSER+ +  +  + S   ALTEY++I     G+TWLELF
Sbjct: 261  TPRHPKGLLSAPLAKVLLQDGKSERLTVRASSNAASVQDALTEYRVIEYCPHGYTWLELF 320

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            P TGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+ LP+++ + E + K KLPFGL 
Sbjct: 321  PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMPLPLPRTINE-ELLRKRKLPFGLV 379

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSK-DHDFSQVEKLNLVAPLPPHMQKSW 300
            + GGSI+++ P++HLHCKQMVLP++S+A+ +LQS  D DFS +EKLN VAPLP HM+ SW
Sbjct: 380  VGGGSIAEEQPQLHLHCKQMVLPDISVAVHRLQSDVDPDFSDLEKLNFVAPLPLHMRLSW 439

Query: 299  EILNSL 282
            EIL S+
Sbjct: 440  EILKSV 445


>ref|XP_004954753.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like, partial
            [Setaria italica]
          Length = 509

 Score =  305 bits (780), Expect = 2e-80
 Identities = 151/247 (61%), Positives = 195/247 (78%), Gaps = 2/247 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIG 837
            PRLVHRLDRD SGVLVLGRTQ S +++H++FREKT+ AL++   GTQ+ +QRKY+ALVIG
Sbjct: 265  PRLVHRLDRDCSGVLVLGRTQLSASIMHAIFREKTADALAD---GTQQVLQRKYVALVIG 321

Query: 836  TPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELF 657
             PRH +GL+SA LAKIVL+DGKSER+ +       S   ALTEY++I S  QG+TWLELF
Sbjct: 322  RPRHSKGLLSAPLAKIVLQDGKSERLTVCAGSNPASVQDALTEYRVIESCPQGYTWLELF 381

Query: 656  PLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLN 477
            P TGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+ +PQ++   E + K KLPFGL 
Sbjct: 382  PRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMPLPIPQAM-DVEMLKKRKLPFGLA 440

Query: 476  LNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD--HDFSQVEKLNLVAPLPPHMQKS 303
            L GGS+++  P++HLHCKQM+LP++S A+Q+LQS +  H+FS +EKL+ VAPLP HM+ S
Sbjct: 441  LGGGSVAEDQPQLHLHCKQMILPDISAAMQRLQSSESNHNFSDLEKLSFVAPLPLHMRLS 500

Query: 302  WEILNSL 282
            WEIL S+
Sbjct: 501  WEILKSV 507


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  304 bits (778), Expect = 4e-80
 Identities = 149/248 (60%), Positives = 193/248 (77%), Gaps = 3/248 (1%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 840
            PPRLVHRLDRD SG+LV+GRTQ+S  VLHS+FREKT GA +++    +  +QR+Y A VI
Sbjct: 223  PPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVI 282

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G+PRHP GLISA L K+VL++GKS+RI + +   + SS HA+T+YK+IGSSS G+TWLEL
Sbjct: 283  GSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTWLEL 342

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKS-EDIPKEK-LPF 486
             PLTGRKHQLRVHCA++LGTP+VGD KYG + +   +P+H P    K  E +PK K LPF
Sbjct: 343  SPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIEVLPKRKNLPF 402

Query: 485  GLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQS-KDHDFSQVEKLNLVAPLPPHMQ 309
            GLN++ GSIS+K PR+HLHCKQMVLPN+S  LQ +Q   D++ S++E+L L APLP +MQ
Sbjct: 403  GLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERLKLDAPLPSYMQ 462

Query: 308  KSWEILNS 285
            +SW + NS
Sbjct: 463  RSWHLTNS 470


>gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
          Length = 432

 Score =  298 bits (763), Expect = 2e-78
 Identities = 152/244 (62%), Positives = 191/244 (78%), Gaps = 2/244 (0%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 840
            PPRLVHRLDRD SG+LV+GRTQ+ST VLHS+FREKTS AL +D    +R +QR+Y ALV+
Sbjct: 187  PPRLVHRLDRDCSGILVMGRTQTSTTVLHSIFREKTSRAL-DDTEEEKRILQRRYWALVL 245

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G PR  +GL++ASL K+V+++GKS+RI + DN  S SS HA+TEY++I SSSQG+TWLEL
Sbjct: 246  GRPRCSKGLVTASLGKVVVDNGKSDRITVVDNSTSLSSQHAITEYRVIASSSQGYTWLEL 305

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSED-IPKEKLPFG 483
             PLTGRKHQLRVHCA++LGTPIVGD KYG + + K     L       E+ + +E LPFG
Sbjct: 306  SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGNFDLSNVEDSCEEHLKEETLPFG 365

Query: 482  LNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQS-KDHDFSQVEKLNLVAPLPPHMQK 306
            LNLN GSIS+  PR+HLHCK++VLPN+S ALQ +QS  + D SQVE L LVA LPP+MQ+
Sbjct: 366  LNLNNGSISENRPRLHLHCKKIVLPNISEALQNVQSFSNCDLSQVEGLQLVADLPPYMQR 425

Query: 305  SWEI 294
            SW+I
Sbjct: 426  SWDI 429


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  297 bits (761), Expect = 4e-78
 Identities = 147/250 (58%), Positives = 196/250 (78%), Gaps = 5/250 (2%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 840
            PPRLVHRLDRDSSG+LV+GRTQ S  +LHS+FRE+T+ A  +D+   +R +Q++Y ALVI
Sbjct: 230  PPRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVI 289

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G+PR P+G+I A L K+V++DGKS+RI + DN +  SS  A TEY++I ++S G+TWLEL
Sbjct: 290  GSPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLEL 349

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTK---SEDIPKEK-L 492
             PLTGRKHQLRVHCA++LGTPIVGD KYG + + + +  HLP+S  K   ++  P+E  L
Sbjct: 350  SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRWQ--HLPESDLKKSSNDKCPEENML 407

Query: 491  PFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPH 315
            PFGLN++ GSIS K PR+HLHC++M+ PNVS ALQ LQ S DHD S+++ L +VAPLP +
Sbjct: 408  PFGLNMDSGSISAKRPRLHLHCREMIFPNVSQALQNLQLSTDHDLSKLKSLEVVAPLPSY 467

Query: 314  MQKSWEILNS 285
            MQKSW+I+NS
Sbjct: 468  MQKSWDIMNS 477


>ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501934|gb|AES83137.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 430

 Score =  296 bits (759), Expect = 7e-78
 Identities = 153/250 (61%), Positives = 191/250 (76%), Gaps = 5/250 (2%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAI-QRKYLALV 843
            PPRLVHRLDRD SG+LV+GRT++STA+LHS+FREKTS A SN+   T++ I QR+Y ALV
Sbjct: 182  PPRLVHRLDRDCSGILVMGRTKTSTALLHSIFREKTSRA-SNEENDTEKIILQRRYWALV 240

Query: 842  IGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLE 663
            +G PR   G+++A L K+V+++GKS+RI I DN    SS HA+TEY++I SSS GFTWLE
Sbjct: 241  LGCPRRSGGVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLE 300

Query: 662  LFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSED-IPKEKLPF 486
            L PLTGRKHQLRVHCA++LGTPIVGD KYGR+ + K            +E+ + +E LPF
Sbjct: 301  LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSNLEDSTEEHLKEEALPF 360

Query: 485  GLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQS---KDHDFSQVEKLNLVAPLPPH 315
            GLNLN GSISDK PR+HLHCKQ+VLPN+S ALQ +QS     +D S VE L L A LPP+
Sbjct: 361  GLNLNKGSISDKHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLSAVESLELEADLPPY 420

Query: 314  MQKSWEILNS 285
            M+KSWE+ NS
Sbjct: 421  MKKSWEVTNS 430


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  293 bits (750), Expect = 7e-77
 Identities = 145/248 (58%), Positives = 195/248 (78%), Gaps = 3/248 (1%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 840
            PPRLVHRLDRDSSG+LV+GRTQ+ST VLHS+FREKT  A ++DI   +R +QRKY ALVI
Sbjct: 290  PPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVI 349

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G+PR  +G+ISA L K+V++DGKS+RI + +N  STS  HA+T+Y+++  SS G+ WLEL
Sbjct: 350  GSPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVM-ESSHGYAWLEL 408

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLP--QSVTKSEDIPKEKLPF 486
             P+TGRKHQLRVHCA++LGTPIVGD KYG + + K + +  P  + ++    + K+ LPF
Sbjct: 409  SPITGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPF 468

Query: 485  GLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQ 309
            G++L  GSIS+K PR+HLHCKQMVLP+VS AL+ +Q S ++DFS ++ + L APLP +MQ
Sbjct: 469  GIDLESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQ 528

Query: 308  KSWEILNS 285
            +SW+ILNS
Sbjct: 529  RSWDILNS 536


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
            arietinum]
          Length = 458

 Score =  292 bits (747), Expect = 2e-76
 Identities = 150/249 (60%), Positives = 191/249 (76%), Gaps = 4/249 (1%)
 Frame = -2

Query: 1019 PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 840
            PPRLVHRLDRD SG+LV+GRTQ+ST VLHS+FR+KTS A  ++ T  +R +QR+Y ALVI
Sbjct: 211  PPRLVHRLDRDCSGILVMGRTQTSTVVLHSIFRDKTSRASDHNDT-EKRILQRRYWALVI 269

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G PR   GLI++ L K+V+++GKS+RI I +N    SS HA+TEY+++GSSS G+TWLEL
Sbjct: 270  GRPRRSGGLITSPLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEYRVLGSSSDGYTWLEL 329

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEK-LPFG 483
             PLTGRKHQLRVHCA++LGTPIVGD KYG + + K     L      +E++ KE+ LPFG
Sbjct: 330  SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGHFDLCNLEDSTEELLKEETLPFG 389

Query: 482  LNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQS---KDHDFSQVEKLNLVAPLPPHM 312
            LNLN GSISDK PR+HLHCKQ++LPN+S ALQ +QS    + D S VE L L A LPP+M
Sbjct: 390  LNLNKGSISDKHPRLHLHCKQIILPNISQALQDVQSLSASNCDLSVVEALKLEAELPPYM 449

Query: 311  QKSWEILNS 285
            Q+SW++ NS
Sbjct: 450  QRSWDVTNS 458


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
            gi|548850328|gb|ERN08832.1| hypothetical protein
            AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  291 bits (745), Expect = 3e-76
 Identities = 144/246 (58%), Positives = 190/246 (77%), Gaps = 2/246 (0%)
 Frame = -2

Query: 1016 PRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSN-DITGTQRAIQRKYLALVI 840
            PRLVHRLD+DSSG+LV+GRTQ ST +LHS+FR+KT GA  N DI  ++  ++RKY ALVI
Sbjct: 213  PRLVHRLDQDSSGILVMGRTQESTTLLHSIFRDKTCGASFNVDIKNSKIILKRKYWALVI 272

Query: 839  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 660
            G P+   GLISA L+K++L+DGKSERI ++++ ++ S+ HA+TEY+++ SS  GFTWLEL
Sbjct: 273  GNPQPSEGLISAPLSKLLLDDGKSERITVSEDSKNKSARHAITEYRVLRSSGHGFTWLEL 332

Query: 659  FPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGL 480
            +P TGRKHQLRVHCA++LGTPI+GD KYG   + K +P        K E+    K PFGL
Sbjct: 333  YPRTGRKHQLRVHCAEVLGTPILGDYKYGWNAHRKWKPF----PTLKFEERLNRKAPFGL 388

Query: 479  NLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD-HDFSQVEKLNLVAPLPPHMQKS 303
            +L GGS+SDK PR+HLHC+QM LPN+S+A Q L  +   D S++EKL+LVAPLP HM++S
Sbjct: 389  DLEGGSVSDKKPRLHLHCRQMTLPNMSLAFQHLHEQSVDDLSKLEKLDLVAPLPLHMRRS 448

Query: 302  WEILNS 285
            W+ILNS
Sbjct: 449  WDILNS 454