BLASTX nr result
ID: Zingiber24_contig00029203
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00029203
(432 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containi... 93 4e-17
emb|CBI23556.3| unnamed protein product [Vitis vinifera] 93 4e-17
ref|XP_004231236.1| PREDICTED: pentatricopeptide repeat-containi... 88 1e-15
ref|XP_006347856.1| PREDICTED: pentatricopeptide repeat-containi... 86 7e-15
ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containi... 77 2e-12
ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 76 4e-12
gb|EXC74714.1| hypothetical protein L484_000366 [Morus notabilis] 74 2e-11
gb|EXC31503.1| hypothetical protein L484_001299 [Morus notabilis] 74 2e-11
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
ref|XP_002321443.2| hypothetical protein POPTR_0015s02060g [Popu... 70 3e-10
gb|EOY23498.1| Tetratricopeptide repeat-like superfamily protein... 70 3e-10
ref|XP_002522011.1| pentatricopeptide repeat-containing protein,... 67 2e-09
ref|XP_006422178.1| hypothetical protein CICLE_v10006927mg [Citr... 65 7e-09
ref|XP_004306045.1| PREDICTED: pentatricopeptide repeat-containi... 65 1e-08
gb|EPS60295.1| hypothetical protein M569_14504, partial [Genlise... 58 1e-06
ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containi... 57 2e-06
>ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 92.8 bits (229), Expect = 4e-17
Identities = 50/108 (46%), Positives = 63/108 (58%)
Frame = +3
Query: 108 VSTRNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXX 287
+S +NP+ E LK+RLIR D GR+ A STLDLM + P DL +YS+
Sbjct: 33 LSLKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQ 92
Query: 288 XXXXXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
SGL+ DSVV N+LISLYSKCG+ E A IFE MG++R
Sbjct: 93 LGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKR 140
>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 92.8 bits (229), Expect = 4e-17
Identities = 50/108 (46%), Positives = 63/108 (58%)
Frame = +3
Query: 108 VSTRNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXX 287
+S +NP+ E LK+RLIR D GR+ A STLDLM + P DL +YS+
Sbjct: 2 LSLKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQ 61
Query: 288 XXXXXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
SGL+ DSVV N+LISLYSKCG+ E A IFE MG++R
Sbjct: 62 LGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKR 109
>ref|XP_004231236.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Solanum lycopersicum]
Length = 844
Score = 87.8 bits (216), Expect = 1e-15
Identities = 48/105 (45%), Positives = 58/105 (55%)
Frame = +3
Query: 117 RNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXXXX 296
RNP EALKD LIR A+ G + A+STLD ++ G DL SY+V
Sbjct: 23 RNPDFEALKDTLIRQANGGNLKQAISTLDQISQMGFNPDLTSYTVLLKSCIRTRNFQIGQ 82
Query: 297 XXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
DS +Q D++V NSLISLYSK G WE A IFE MG +R
Sbjct: 83 LLHSKLNDSPIQPDTIVLNSLISLYSKMGSWETAEKIFESMGEKR 127
>ref|XP_006347856.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Solanum tuberosum]
Length = 849
Score = 85.5 bits (210), Expect = 7e-15
Identities = 47/105 (44%), Positives = 58/105 (55%)
Frame = +3
Query: 117 RNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXXXX 296
RNP EALKD LIR A+ G + A+STLD ++ G DL SY+V
Sbjct: 28 RNPDFEALKDTLIRQANVGNLKQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQFGQ 87
Query: 297 XXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
DS L+ D+++ NSLISLYSK G WE A IFE MG +R
Sbjct: 88 LLHSKLNDSPLEPDTILLNSLISLYSKMGSWETAEKIFESMGEKR 132
>ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 77.0 bits (188), Expect = 2e-12
Identities = 47/116 (40%), Positives = 62/116 (53%)
Frame = +3
Query: 84 ATSVSFRRVSTRNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXX 263
++S+ F + NP L RLI+ ++GR+ A+STL+ M +G DL +YS+
Sbjct: 20 SSSLQFPTFTNPNP----LTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKK 75
Query: 264 XXXXXXXXXXXXXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
S LQ DSV NSLISLYSKCG+WE A SIF+ MGS R
Sbjct: 76 CIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSR 131
>ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 76.3 bits (186), Expect = 4e-12
Identities = 47/116 (40%), Positives = 61/116 (52%)
Frame = +3
Query: 84 ATSVSFRRVSTRNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXX 263
++S+ F + NP L RLI+ ++GR+ A+STL+ M +G DL +YS+
Sbjct: 20 SSSLQFPTFTNPNP----LTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKK 75
Query: 264 XXXXXXXXXXXXXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
S LQ DSV NSLISLYSKCG+WE A SIF MGS R
Sbjct: 76 CIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSR 131
>gb|EXC74714.1| hypothetical protein L484_000366 [Morus notabilis]
Length = 841
Score = 74.3 bits (181), Expect = 2e-11
Identities = 44/110 (40%), Positives = 59/110 (53%)
Frame = +3
Query: 102 RRVSTRNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXX 281
+++S ++ + E K RLI + GR+ A+STLDLM G DL SYS+
Sbjct: 14 QKLSPKSFNFEPHKSRLIHDLNVGRLSKAISTLDLMVHNGAHPDLPSYSLLLKSCIRSRN 73
Query: 282 XXXXXXXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
+S L DS+ NSLISLYSK G+WE A SIF MG++R
Sbjct: 74 FELGKLVHAHLVNSKLDLDSLTLNSLISLYSKNGDWEKADSIFRSMGNKR 123
>gb|EXC31503.1| hypothetical protein L484_001299 [Morus notabilis]
Length = 348
Score = 74.3 bits (181), Expect = 2e-11
Identities = 44/110 (40%), Positives = 59/110 (53%)
Frame = +3
Query: 102 RRVSTRNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXX 281
+++S ++ + E K RLI + GR+ A+STLDLM G DL SYS+
Sbjct: 14 QKLSPKSFNFEPHKSRLIHDLNVGRLSKAISTLDLMVHNGAHPDLPSYSLLLKSCIRSRN 73
Query: 282 XXXXXXXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
+S L DS+ NSLISLYSK G+WE A SIF MG++R
Sbjct: 74 FELGKLVHAHLVNSKLDLDSLTLNSLISLYSKNGDWEKADSIFRSMGNKR 123
>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 73.9 bits (180), Expect = 2e-11
Identities = 40/89 (44%), Positives = 49/89 (55%)
Frame = +3
Query: 165 DSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXXXXXXXXXXXDSGLQFDSV 344
D GR+ A STLDLM + P DL +YS+ SGL+ DSV
Sbjct: 3 DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 62
Query: 345 VTNSLISLYSKCGEWEAALSIFEEMGSRR 431
V N+LISLYSKCG+ E A IFE MG++R
Sbjct: 63 VLNTLISLYSKCGDTETARLIFEGMGNKR 91
>ref|XP_002321443.2| hypothetical protein POPTR_0015s02060g [Populus trichocarpa]
gi|550321785|gb|EEF05570.2| hypothetical protein
POPTR_0015s02060g [Populus trichocarpa]
Length = 931
Score = 70.1 bits (170), Expect = 3e-10
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = +3
Query: 186 ALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXXXXXXXXXXXDSGLQFDSVVTNSLIS 365
A+STLD M+ +G DL++YS+ SGL+ DSV+ NSLIS
Sbjct: 132 AISTLDQMSLQGTHPDLITYSLLLKSCIRSHNYQLGHLVHHRLTQSGLELDSVILNSLIS 191
Query: 366 LYSKCGEWEAALSIFEEMGSRR 431
LYSKCG+W+ A IFE MG++R
Sbjct: 192 LYSKCGDWQQAHEIFESMGNKR 213
>gb|EOY23498.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
Length = 860
Score = 70.1 bits (170), Expect = 3e-10
Identities = 40/105 (38%), Positives = 55/105 (52%)
Frame = +3
Query: 117 RNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXXXX 296
R + E L++RLI D G + A+STLD+MA + DL++YS+
Sbjct: 36 RPVNFETLRNRLINHLDEGHLHKAVSTLDVMARQNTHPDLITYSLLLKACIRSRDFQLGK 95
Query: 297 XXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
S L+ DSV+ NSLISLYSK G+W A IF+ M +R
Sbjct: 96 IVHTNLNQSKLELDSVLFNSLISLYSKSGDWARAHKIFQRMEDKR 140
>ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538815|gb|EEF40415.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 585
Score = 67.0 bits (162), Expect = 2e-09
Identities = 38/107 (35%), Positives = 53/107 (49%)
Frame = +3
Query: 111 STRNPSLEALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXX 290
S+ + +L RLI +G + A+ LD+M DL++YS+
Sbjct: 34 SSAHSDSHSLNTRLINHLKAGHLSKAIIALDVMTQNNTHPDLITYSLLLKSCIRSNNFQK 93
Query: 291 XXXXXXXXXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
SGL+ DSV+ NSLISLYSKCGE +A IF MG++R
Sbjct: 94 GKLVHNCLTQSGLELDSVILNSLISLYSKCGELNSANDIFISMGNKR 140
>ref|XP_006422178.1| hypothetical protein CICLE_v10006927mg [Citrus clementina]
gi|568874825|ref|XP_006490514.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Citrus sinensis]
gi|557524051|gb|ESR35418.1| hypothetical protein
CICLE_v10006927mg [Citrus clementina]
Length = 861
Score = 65.5 bits (158), Expect = 7e-09
Identities = 39/100 (39%), Positives = 53/100 (53%)
Frame = +3
Query: 132 EALKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXXXXXXXXX 311
E L +RLI + GR+ A+ TLDLM +G DL +YS+
Sbjct: 44 EPLSNRLIYHLNEGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSL 103
Query: 312 XXDSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
S L+ +SV+ NSLISLYSKCG+ A IF+ MG++R
Sbjct: 104 LTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKR 143
>ref|XP_004306045.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 844
Score = 64.7 bits (156), Expect = 1e-08
Identities = 40/98 (40%), Positives = 53/98 (54%)
Frame = +3
Query: 138 LKDRLIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXXXXXXXXXXX 317
L RLI + G + A+STLDLMA RG DL +YS+
Sbjct: 28 LHRRLISQINVGHLPKAISTLDLMARRGSHPDLPTYSLLLKSCLRSRRFHLAKLVHAHLS 87
Query: 318 DSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
S L+ DS++ NSLIS+YSK G++E A SIF+ MG +R
Sbjct: 88 RSHLRPDSLILNSLISVYSKSGDFETARSIFQTMGPKR 125
>gb|EPS60295.1| hypothetical protein M569_14504, partial [Genlisea aurea]
Length = 819
Score = 58.2 bits (139), Expect = 1e-06
Identities = 32/94 (34%), Positives = 47/94 (50%)
Frame = +3
Query: 150 LIRLADSGRIDDALSTLDLMADRGIPADLVSYSVXXXXXXXXXXXXXXXXXXXXXXDSGL 329
LIR A+ G +++A STLD M D ++V +SG+
Sbjct: 1 LIRSAEDGCVEEAKSTLDFMLRSDFIPDRTVFTVLLKSCIRRRRFELGREVHSLVIESGI 60
Query: 330 QFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
+FD+++ NSLISLY+K G+W A IF MG +
Sbjct: 61 EFDAILFNSLISLYAKSGDWRKADEIFGSMGEMK 94
>ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +3
Query: 318 DSGLQFDSVVTNSLISLYSKCGEWEAALSIFEEMGSRR 431
DSGL DSV+ NSLI+LYSKCG+WE ALSIF MG +
Sbjct: 67 DSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104