BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00028739
         (772 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   172   1e-40
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              172   1e-40
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   152   1e-34
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   151   2e-34
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu...   150   5e-34
ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III s...   147   4e-33
ref|XP_006366085.1| PREDICTED: uncharacterized protein LOC102595...   145   1e-32
ref|XP_006366082.1| PREDICTED: uncharacterized protein LOC102595...   145   1e-32
ref|XP_006355443.1| PREDICTED: DNA-directed RNA polymerase III s...   145   1e-32
ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III s...   145   1e-32
ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III s...   145   1e-32
gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus pe...   145   2e-32
gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theo...   140   5e-31
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   138   2e-30
gb|ESW29064.1| hypothetical protein PHAVU_002G0404001g, partial ...   137   4e-30
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5...   136   7e-30
ref|XP_003589437.1| hypothetical protein MTR_1g024320 [Medicago ...   136   7e-30
ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citr...   136   9e-30
ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|1017...   134   4e-29
ref|XP_004300617.1| PREDICTED: DNA-directed RNA polymerase III s...   132   1e-28

>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
            vinifera]
          Length = 672

 Score =  172 bits (436), Expect = 1e-40
 Identities = 107/245 (43%), Positives = 142/245 (57%), Gaps = 12/245 (4%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLV---RWNNIIKSLGERMHAPTPSGK- 170
            ER   + WKFKE TD  +++ +P+IV EQ + W     +  +II   G R      SGK 
Sbjct: 429  ERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKP 488

Query: 171  -------RAKVVDGA-RGGKDKPVNTAMSTLSTETLEHLPKILLKIFQDQKIRSMNSVIN 326
                    +   DGA R     PV    + +S ET E LPK L ++F+  K+ S   +  
Sbjct: 489  SIANKTGTSTKSDGATRATNGTPVRR--TAMSAETREALPKALEEVFRLHKVCSFQLICQ 546

Query: 327  GLRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS 506
             LR LA+S S+ P+ DPRT     AA  GA AP  EL AI+S+ A  VHGVY+ K+S  S
Sbjct: 547  ALRDLAVSKSTSPKVDPRTFV---AAAYGADAPQEELHAIISKYATTVHGVYVWKTSEHS 603

Query: 507  DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWV 686
            + + LR VV+DLF GKEPNAKL + +I  AAK  L+K+IT  +YN+V+ ELC+S    WV
Sbjct: 604  EHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKVVSELCESRGSLWV 663

Query: 687  LKSGD 701
            LKSGD
Sbjct: 664  LKSGD 668


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  172 bits (436), Expect = 1e-40
 Identities = 107/245 (43%), Positives = 142/245 (57%), Gaps = 12/245 (4%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLV---RWNNIIKSLGERMHAPTPSGK- 170
            ER   + WKFKE TD  +++ +P+IV EQ + W     +  +II   G R      SGK 
Sbjct: 445  ERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKP 504

Query: 171  -------RAKVVDGA-RGGKDKPVNTAMSTLSTETLEHLPKILLKIFQDQKIRSMNSVIN 326
                    +   DGA R     PV    + +S ET E LPK L ++F+  K+ S   +  
Sbjct: 505  SIANKTGTSTKSDGATRATNGTPVRR--TAMSAETREALPKALEEVFRLHKVCSFQLICQ 562

Query: 327  GLRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS 506
             LR LA+S S+ P+ DPRT     AA  GA AP  EL AI+S+ A  VHGVY+ K+S  S
Sbjct: 563  ALRDLAVSKSTSPKVDPRTFV---AAAYGADAPQEELHAIISKYATTVHGVYVWKTSEHS 619

Query: 507  DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWV 686
            + + LR VV+DLF GKEPNAKL + +I  AAK  L+K+IT  +YN+V+ ELC+S    WV
Sbjct: 620  EHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKVVSELCESRGSLWV 679

Query: 687  LKSGD 701
            LKSGD
Sbjct: 680  LKSGD 684


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
            sativus]
          Length = 702

 Score =  152 bits (384), Expect = 1e-34
 Identities = 93/248 (37%), Positives = 134/248 (54%), Gaps = 15/248 (6%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNI------IKSLGERMHAPTPS 164
            ER   K WKFKE TD +++ N+  I ++QE+ W    NN+      ++S+    HA   +
Sbjct: 458  ERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELW----NNVEKGFTFLRSIKSVHHANAAT 513

Query: 165  GKRAKVVDGARGGKDKPVNTAMST--------LSTETLEHLPKILLKIFQDQKIRSMNSV 320
            GK   V    +        T  S         +S ET E LPK L K+FQ+ K+ S   +
Sbjct: 514  GKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLI 573

Query: 321  INGLRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSG 500
              GLR LA+S S+ P+ D R      AA  G  AP  EL+ I+SQ+A ++HG+Y+L SS 
Sbjct: 574  CQGLRDLAVSQSTLPKADARMAV---AAAYGVDAPPDELKKIISQVATEIHGLYVLTSSP 630

Query: 501  SS-DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKG 677
               ++  LR VVI L RG+ P A L K ++  A+K  L + I  ++Y++V+ E+C S   
Sbjct: 631  EHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGS 690

Query: 678  SWVLKSGD 701
            SW LKSGD
Sbjct: 691  SWTLKSGD 698


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  151 bits (382), Expect = 2e-34
 Identities = 93/248 (37%), Positives = 133/248 (53%), Gaps = 15/248 (6%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNI------IKSLGERMHAPTPS 164
            ER   K WKFKE TD +++ N+  I ++QE+ W    NN+      ++S+    HA   +
Sbjct: 458  ERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELW----NNVEKGFTFLRSIKSVHHANAAT 513

Query: 165  GKRAKVVDGARGGKDKPVNTAMST--------LSTETLEHLPKILLKIFQDQKIRSMNSV 320
            GK   V    +        T  S         +S ET E LPK L K+FQ+ K+ S   +
Sbjct: 514  GKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLI 573

Query: 321  INGLRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSG 500
              GLR LA+S S+ P+ D R      AA  G  AP  EL  I+SQ+A ++HG+Y+L SS 
Sbjct: 574  CQGLRDLAVSQSTLPKADARMAV---AAAYGVDAPPDELXKIISQVATEIHGLYVLTSSP 630

Query: 501  SS-DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKG 677
               ++  LR VVI L RG+ P A L K ++  A+K  L + I  ++Y++V+ E+C S   
Sbjct: 631  EHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGS 690

Query: 678  SWVLKSGD 701
            SW LKSGD
Sbjct: 691  SWTLKSGD 698


>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
            gi|550334731|gb|EEE90658.2| hypothetical protein
            POPTR_0007s12540g [Populus trichocarpa]
          Length = 667

 Score =  150 bits (379), Expect = 5e-34
 Identities = 94/240 (39%), Positives = 133/240 (55%), Gaps = 7/240 (2%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGERMHAPTPSGKRAKV 182
            ER   K WKFKE+ D +++   P+IV +QE+AW V   NI  +                 
Sbjct: 446  ERPSFKDWKFKENVDTLFVELYPDIVRKQEQAWEVMGKNISAAFD--------------- 490

Query: 183  VDGARGGKDKPVNTAMS---TLSTETLEHLPKILLKIFQDQKI--RSMNSVINGLRGLAI 347
                R GK    N       T++ ET E L K L K+ Q  K+       +  GLR LAI
Sbjct: 491  ----RAGKSVSKNVITKPKKTMTDETREALRKALPKVLQTHKVCRYGFQMICQGLRQLAI 546

Query: 348  SNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS-DFHRL- 521
            S S+ P+ DPR   I  AA +GA AP  ELQ ++S++A ++HG Y+LKSS    DF  L 
Sbjct: 547  SQSTLPKADPR---IAVAAASGAEAPPEELQEVISEVATNIHGFYVLKSSPEHPDFDPLS 603

Query: 522  RDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLKSGD 701
            R VVI LF  + PNA + K E++ AA+  L+++ ++S+Y +V+ +LC+S   +WVLKSGD
Sbjct: 604  RKVVIGLFLARGPNANIKKSEVQAAARLELKREPSNSEYIKVMTDLCESKGSAWVLKSGD 663


>ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Solanum
            lycopersicum]
          Length = 669

 Score =  147 bits (371), Expect = 4e-33
 Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 4/237 (1%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLV---RWNNIIKSLGERMHAPTPSGKR 173
            ER  L  WK KE  D  +     ++V EQ+  W     + N+++     R     P  + 
Sbjct: 431  ERPDLNDWKLKEHPDKKFENLYGDVVREQQATWECLGKQINDVLPGGRTRPTMKNPINRN 490

Query: 174  AKVVDGARGGKDKPVNTAMSTLSTETLEHLPKILLKIFQDQKIRSMNSVINGLRGLAISN 353
            A +     G K    +   +++S E  E LPK L ++F+  K+ S   +  GLR L +S 
Sbjct: 491  ADITALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQIRQGLRKLGVSK 550

Query: 354  SSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS-DFHRLRDV 530
            S  P+  PR    I A+ +   AP  E+QA+++Q+AV++HGVY+LKSS  +  +  LR +
Sbjct: 551  SYPPKGAPRKA--ITASVDVFDAPQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKI 608

Query: 531  VIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLKSGD 701
            VIDLF  + P+AKL K  +  AAK +L +DIT+ ++ +V++ELC S K +WVL+SGD
Sbjct: 609  VIDLFMAEGPSAKLKKASVTEAAKLQLNRDITNVEFLKVMKELCHSEKSAWVLRSGD 665


>ref|XP_006366085.1| PREDICTED: uncharacterized protein LOC102595101 isoform X4 [Solanum
           tuberosum] gi|565401172|ref|XP_006366086.1| PREDICTED:
           uncharacterized protein LOC102595101 isoform X5 [Solanum
           tuberosum] gi|565401174|ref|XP_006366087.1| PREDICTED:
           uncharacterized protein LOC102595101 isoform X6 [Solanum
           tuberosum]
          Length = 387

 Score =  145 bits (367), Expect = 1e-32
 Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
 Frame = +3

Query: 3   ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGERMHAPTPSGKRAKV 182
           ER  L  WK KE  D  +     ++V E++  W        + LG++++   P G+    
Sbjct: 149 ERPDLNDWKLKEHPDKKFENLYGDVVREKQATW--------ECLGKQINDVLPGGRNRPT 200

Query: 183 VDG---------ARGGKDKPVNTAM--STLSTETLEHLPKILLKIFQDQKIRSMNSVING 329
           +           A    DKP ++++  +++S E  E LPK L ++F+  K+ S   +  G
Sbjct: 201 MKNPLNPNADIPALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQIRQG 260

Query: 330 LRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS- 506
           LR L +S S  P+  PR    I A+ +   AP  E+QA+++Q+AV++HGVY+LKSS  + 
Sbjct: 261 LRKLGVSKSYPPKGAPRKA--ITASIDVFDAPQEEIQAVINQVAVNIHGVYVLKSSPDNP 318

Query: 507 DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWV 686
            +  LR VVIDLF  + P+AKL K  +  AAK +L +DIT+ ++ +V++ELC S K +WV
Sbjct: 319 QYDTLRKVVIDLFMAEGPSAKLKKASVTEAAKLQLNRDITNVEFLKVMKELCHSEKSAWV 378

Query: 687 LKSGD 701
           L+SGD
Sbjct: 379 LRSGD 383


>ref|XP_006366082.1| PREDICTED: uncharacterized protein LOC102595101 isoform X1 [Solanum
           tuberosum] gi|565401166|ref|XP_006366083.1| PREDICTED:
           uncharacterized protein LOC102595101 isoform X2 [Solanum
           tuberosum] gi|565401168|ref|XP_006366084.1| PREDICTED:
           uncharacterized protein LOC102595101 isoform X3 [Solanum
           tuberosum]
          Length = 426

 Score =  145 bits (367), Expect = 1e-32
 Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
 Frame = +3

Query: 3   ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGERMHAPTPSGKRAKV 182
           ER  L  WK KE  D  +     ++V E++  W        + LG++++   P G+    
Sbjct: 188 ERPDLNDWKLKEHPDKKFENLYGDVVREKQATW--------ECLGKQINDVLPGGRNRPT 239

Query: 183 VDG---------ARGGKDKPVNTAM--STLSTETLEHLPKILLKIFQDQKIRSMNSVING 329
           +           A    DKP ++++  +++S E  E LPK L ++F+  K+ S   +  G
Sbjct: 240 MKNPLNPNADIPALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQIRQG 299

Query: 330 LRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS- 506
           LR L +S S  P+  PR    I A+ +   AP  E+QA+++Q+AV++HGVY+LKSS  + 
Sbjct: 300 LRKLGVSKSYPPKGAPRKA--ITASIDVFDAPQEEIQAVINQVAVNIHGVYVLKSSPDNP 357

Query: 507 DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWV 686
            +  LR VVIDLF  + P+AKL K  +  AAK +L +DIT+ ++ +V++ELC S K +WV
Sbjct: 358 QYDTLRKVVIDLFMAEGPSAKLKKASVTEAAKLQLNRDITNVEFLKVMKELCHSEKSAWV 417

Query: 687 LKSGD 701
           L+SGD
Sbjct: 418 LRSGD 422


>ref|XP_006355443.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X3 [Solanum tuberosum]
          Length = 577

 Score =  145 bits (367), Expect = 1e-32
 Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGERMHAPTPSGKRAKV 182
            ER  L  WK KE  D  +     ++V E++  W        + LG++++   P G+    
Sbjct: 339  ERPDLNDWKLKEHPDKKFENLYGDVVREKQATW--------ECLGKQINDVLPGGRNRPT 390

Query: 183  VDG---------ARGGKDKPVNTAM--STLSTETLEHLPKILLKIFQDQKIRSMNSVING 329
            +           A    DKP ++++  +++S E  E LPK L ++F+  K+ S   +  G
Sbjct: 391  MKNPLNPNADIPALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQIRQG 450

Query: 330  LRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS- 506
            LR L +S S  P+  PR    I A+ +   AP  E+QA+++Q+AV++HGVY+LKSS  + 
Sbjct: 451  LRKLGVSKSYPPKGAPRKA--ITASIDVFDAPQEEIQAVINQVAVNIHGVYVLKSSPDNP 508

Query: 507  DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWV 686
             +  LR VVIDLF  + P+AKL K  +  AAK +L +DIT+ ++ +V++ELC S K +WV
Sbjct: 509  QYDTLRKVVIDLFMAEGPSAKLKKASVTEAAKLQLNRDITNVEFLKVMKELCHSEKSAWV 568

Query: 687  LKSGD 701
            L+SGD
Sbjct: 569  LRSGD 573


>ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X2 [Solanum tuberosum]
          Length = 657

 Score =  145 bits (367), Expect = 1e-32
 Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGERMHAPTPSGKRAKV 182
            ER  L  WK KE  D  +     ++V E++  W        + LG++++   P G+    
Sbjct: 419  ERPDLNDWKLKEHPDKKFENLYGDVVREKQATW--------ECLGKQINDVLPGGRNRPT 470

Query: 183  VDG---------ARGGKDKPVNTAM--STLSTETLEHLPKILLKIFQDQKIRSMNSVING 329
            +           A    DKP ++++  +++S E  E LPK L ++F+  K+ S   +  G
Sbjct: 471  MKNPLNPNADIPALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQIRQG 530

Query: 330  LRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS- 506
            LR L +S S  P+  PR    I A+ +   AP  E+QA+++Q+AV++HGVY+LKSS  + 
Sbjct: 531  LRKLGVSKSYPPKGAPRKA--ITASIDVFDAPQEEIQAVINQVAVNIHGVYVLKSSPDNP 588

Query: 507  DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWV 686
             +  LR VVIDLF  + P+AKL K  +  AAK +L +DIT+ ++ +V++ELC S K +WV
Sbjct: 589  QYDTLRKVVIDLFMAEGPSAKLKKASVTEAAKLQLNRDITNVEFLKVMKELCHSEKSAWV 648

Query: 687  LKSGD 701
            L+SGD
Sbjct: 649  LRSGD 653


>ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X1 [Solanum tuberosum]
          Length = 669

 Score =  145 bits (367), Expect = 1e-32
 Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGERMHAPTPSGKRAKV 182
            ER  L  WK KE  D  +     ++V E++  W        + LG++++   P G+    
Sbjct: 431  ERPDLNDWKLKEHPDKKFENLYGDVVREKQATW--------ECLGKQINDVLPGGRNRPT 482

Query: 183  VDG---------ARGGKDKPVNTAM--STLSTETLEHLPKILLKIFQDQKIRSMNSVING 329
            +           A    DKP ++++  +++S E  E LPK L ++F+  K+ S   +  G
Sbjct: 483  MKNPLNPNADIPALPSGDKPTSSSLLRTSMSEEIREALPKALQEVFRTYKVCSFQQIRQG 542

Query: 330  LRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSS- 506
            LR L +S S  P+  PR    I A+ +   AP  E+QA+++Q+AV++HGVY+LKSS  + 
Sbjct: 543  LRKLGVSKSYPPKGAPRKA--ITASIDVFDAPQEEIQAVINQVAVNIHGVYVLKSSPDNP 600

Query: 507  DFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWV 686
             +  LR VVIDLF  + P+AKL K  +  AAK +L +DIT+ ++ +V++ELC S K +WV
Sbjct: 601  QYDTLRKVVIDLFMAEGPSAKLKKASVTEAAKLQLNRDITNVEFLKVMKELCHSEKSAWV 660

Query: 687  LKSGD 701
            L+SGD
Sbjct: 661  LRSGD 665


>gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus persica]
          Length = 698

 Score =  145 bits (365), Expect = 2e-32
 Identities = 87/237 (36%), Positives = 128/237 (54%), Gaps = 11/237 (4%)
 Frame = +3

Query: 24   WKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGERMHAPTPSGKRAKVVDGARG- 200
            WK KE +D  +    P+I   QE+     W  + + L     A T  G +   +    G 
Sbjct: 463  WKLKEQSDKSFKELYPDIFKSQEQ----NWERMEEKLVNAFKAHTDRGVKNACMTSKPGK 518

Query: 201  --GKDKPVNTAMS-------TLSTETLEHLPKILLKIFQDQKIRSMNSVINGLRGLAISN 353
                DK    + S       T+S ET   LP+ + ++  + K+ +   +  GLR LA+  
Sbjct: 519  SLNSDKGTTKSASDVQIGGRTMSDETRAALPEAIKEVLHEHKVCNFRLICEGLRRLAVRK 578

Query: 354  SSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSSDFH-RLRDV 530
            SS P+ DP+T+ +I+AA  G  AP  ELQ ++ Q+A D+HG+Y+LKSS     H RLR V
Sbjct: 579  SSLPKVDPKTKRVIDAAY-GVDAPQHELQKVICQVAADIHGLYVLKSSPEHSEHDRLRKV 637

Query: 531  VIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLKSGD 701
            VIDL   K PNAKL + E+  AAK  L++DI  ++YN+V+ + C     +W+LKSGD
Sbjct: 638  VIDLLCTKGPNAKLKRGEVFEAAKIALERDINTNEYNKVMNDFCVFKGSAWILKSGD 694


>gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
          Length = 700

 Score =  140 bits (353), Expect = 5e-31
 Identities = 89/242 (36%), Positives = 138/242 (57%), Gaps = 9/242 (3%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSL------GERMHAPTPS 164
            ER   K WK KE+ D  + +  P+IV  QE+ W    +N+I  +      G     P   
Sbjct: 461  ERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTKPGTV 520

Query: 165  GKRAKVVDGARGGKD-KPVNTAMSTLSTETLEHLPKILLKIFQDQKIRSMNSVINGLRGL 341
             K  K ++  +G +   P   A  T+S ET E +PK L K+FQ  K+ S+  +  GLR L
Sbjct: 521  IKPEKAMNSDKGVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDL 580

Query: 342  AISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVH-GVYILKSSGS-SDFH 515
            A+S S+ P+ D R   ++  A  GA AP  ELQ +VS++AV++H G+++L+SS    ++ 
Sbjct: 581  ALSQSTLPKADAR---MVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYD 637

Query: 516  RLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLKS 695
             LR+VVI+L R K    KL K ++  AA   L+++I++++YN+V+ + C+     WVLKS
Sbjct: 638  PLREVVINLLRVK---GKLKKADVSAAALLSLKREISNNEYNKVMSDFCEYKSSWWVLKS 694

Query: 696  GD 701
            GD
Sbjct: 695  GD 696


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 677

 Score =  138 bits (348), Expect = 2e-30
 Identities = 88/230 (38%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIK--------SLGERMHAPT 158
            ER   K WKFKE TD  +I+  P+IV +QE+AW      + K        S+   +  P 
Sbjct: 438  ERPSFKDWKFKEHTDTTFIKLYPDIVKKQEEAWDNTEKRLSKVFDRSGKASMKNAIPKPP 497

Query: 159  PSGKRAKVVDGARG------GKDKPVNTAMSTLSTETLEHLPKILLKIFQDQKIRSMNSV 320
                  K +D  +       G  +   T   T++ ET E L K L K+FQ  K+ S   +
Sbjct: 498  MVHNTVKHLDSEKSMPKIASGMRRLTKT---TITVETREALLKALPKVFQSHKVCSFQLI 554

Query: 321  INGLRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSG 500
              GLR LA+S S+ P+ DPR   I  AA +GA AP  ELQ I+SQ+A ++HG Y+LKSS 
Sbjct: 555  CQGLRDLAVSQSTLPKADPR---IAVAAASGADAPPEELQEIISQVATNIHGFYVLKSSP 611

Query: 501  S-SDFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQV 647
                +  LR V+IDL   + PNAKL K E+  AA+   ++D+T+ +YN++
Sbjct: 612  EHPQYDELRKVIIDLLLARGPNAKLKKAEVFEAARLAFKRDVTNIEYNKL 661


>gb|ESW29064.1| hypothetical protein PHAVU_002G0404001g, partial [Phaseolus
           vulgaris]
          Length = 341

 Score =  137 bits (345), Expect = 4e-30
 Identities = 86/242 (35%), Positives = 129/242 (53%), Gaps = 15/242 (6%)
 Frame = +3

Query: 21  HWKFKESTDFIYIRNNPEIVDEQEKAWL---VRWNNIIKSLGERMHAPTPSGKRAKVVDG 191
           +WKFKE  D  + +  P+IV++QEK +         ++ ++G+R       GK A    G
Sbjct: 107 YWKFKELPDESFKKLYPDIVEKQEKLFKGLEQHLPGLVSNVGKRK-----IGKSAVATQG 161

Query: 192 ARGGKDKPVN------------TAMSTLSTETLEHLPKILLKIFQDQKIRSMNSVINGLR 335
                 K V+            T   T+S ET   LP  L K+FQ  K+ S   +  GLR
Sbjct: 162 VNNDALKSVSSDQRPTSLAGVSTGKMTMSNETRHALPIALKKLFQTNKVCSFKVICQGLR 221

Query: 336 GLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSSDFH 515
            +A+S +   + D +   I   A +    P  EL A+++++A ++HG Y+LKSS    F 
Sbjct: 222 EMAVSKAMLSKGDSK---IAVDAAHSLDGPHNELMAVINEVACEIHGYYVLKSSQDDPF- 277

Query: 516 RLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLKS 695
             RDVVID+ RG  PNAKL K EI  AA+ +L +++ +++YN+V+ ELC S    WVL+S
Sbjct: 278 --RDVVIDMLRGSGPNAKLKKAEIVEAARRKLGREVPNNEYNKVMSELCVSKGSVWVLRS 335

Query: 696 GD 701
           GD
Sbjct: 336 GD 337


>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
            gi|358344405|ref|XP_003636280.1| DNA-directed RNA
            polymerase III subunit RPC5 [Medicago truncatula]
            gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
            gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
          Length = 683

 Score =  136 bits (343), Expect = 7e-30
 Identities = 88/240 (36%), Positives = 130/240 (54%), Gaps = 13/240 (5%)
 Frame = +3

Query: 21   HWKFKESTDFIYIRNNPEIVDEQEKAWLV---RWNNIIKSLGERMH---APTPSGKRAKV 182
            +WKFKE  D  +I+  P +V +QE+ + +     N+II +LG +     A T SG    +
Sbjct: 449  YWKFKELPDESFIKEFPIVVKKQEEIFKILENEVNSIIGTLGGKRKLKSAITNSGVNNAL 508

Query: 183  VDGARG-------GKDKPVNTAMSTLSTETLEHLPKILLKIFQDQKIRSMNSVINGLRGL 341
                         G+D P +    T+S+ET   LP  L K+FQ  K+ S   +   LRGL
Sbjct: 509  FTSTNSDPRATSLGEDPPRSM---TMSSETRHALPIALKKLFQTHKVCSFQLICQELRGL 565

Query: 342  AISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSSDFHRL 521
            A++ +  P+   +       A N    P  EL+AI+ ++A D+HG Y+LKS+ +  F   
Sbjct: 566  ALAQTMLPKGGSKMSV---DAANSLDVPQDELKAILGEVACDIHGCYVLKSAQNDPF--- 619

Query: 522  RDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLKSGD 701
            RDVVID+ RG  PN KL K EI  AA+ +L +D+ +++Y + + ELC S    WVLKSGD
Sbjct: 620  RDVVIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKAVSELCVSKGSFWVLKSGD 679


>ref|XP_003589437.1| hypothetical protein MTR_1g024320 [Medicago truncatula]
           gi|355478485|gb|AES59688.1| hypothetical protein
           MTR_1g024320 [Medicago truncatula]
          Length = 406

 Score =  136 bits (343), Expect = 7e-30
 Identities = 88/240 (36%), Positives = 130/240 (54%), Gaps = 13/240 (5%)
 Frame = +3

Query: 21  HWKFKESTDFIYIRNNPEIVDEQEKAWLV---RWNNIIKSLGERMH---APTPSGKRAKV 182
           +WKFKE  D  +I+  P +V +QE+ + +     N+II +LG +     A T SG    +
Sbjct: 172 YWKFKELPDESFIKEFPIVVKKQEEIFKILENEVNSIIGTLGGKRKLKSAITNSGVNNAL 231

Query: 183 VDGARG-------GKDKPVNTAMSTLSTETLEHLPKILLKIFQDQKIRSMNSVINGLRGL 341
                        G+D P +    T+S+ET   LP  L K+FQ  K+ S   +   LRGL
Sbjct: 232 FTSTNSDPRATSLGEDPPRSM---TMSSETRHALPIALKKLFQTHKVCSFQLICQELRGL 288

Query: 342 AISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSSDFHRL 521
           A++ +  P+   +       A N    P  EL+AI+ ++A D+HG Y+LKS+ +  F   
Sbjct: 289 ALAQTMLPKGGSKMSV---DAANSLDVPQDELKAILGEVACDIHGCYVLKSAQNDPF--- 342

Query: 522 RDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLKSGD 701
           RDVVID+ RG  PN KL K EI  AA+ +L +D+ +++Y + + ELC S    WVLKSGD
Sbjct: 343 RDVVIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKAVSELCVSKGSFWVLKSGD 402


>ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
            gi|568824759|ref|XP_006466762.1| PREDICTED: DNA-directed
            RNA polymerase III subunit RPC5-like [Citrus sinensis]
            gi|557527707|gb|ESR38957.1| hypothetical protein
            CICLE_v10025048mg [Citrus clementina]
          Length = 690

 Score =  136 bits (342), Expect = 9e-30
 Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 10/240 (4%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLV---RWNNIIKSLGERMHA-PTPSGK 170
            ER   K WKF++ TD  +I+ +P IV +QE+ W     +  ++I  LG+        +GK
Sbjct: 450  ERPDFKDWKFRQQTDLSFIKEHPNIVIKQEQVWAAAEKQITDVINKLGKSGSTLRNDAGK 509

Query: 171  RA------KVVDGARGGKDKPVNTAMSTLSTETLEHLPKILLKIFQDQKIRSMNSVINGL 332
             A      K ++ + G       T    LS E+ E LPK L K+FQ  K+ S+  +  GL
Sbjct: 510  SAMVNKHLKAINSSNGPSG--ALTGNKNLSNESREALPKALQKLFQIHKVCSLPLIKQGL 567

Query: 333  RGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSSDF 512
            R LAIS S+ P+ D R   +     + +     E   ++SQ+A ++HG Y+ KSS     
Sbjct: 568  RDLAISQSTLPKADARMTVLAAEIVDSSFVDTQEFAEVISQVATNIHGFYVSKSSEDPQH 627

Query: 513  HRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLK 692
              LR VV DL     P+AKL K ++  AA+  L+++I++++Y++V+ ++C+S   +W+LK
Sbjct: 628  GPLRKVVTDLLLAGGPDAKLKKADVVEAARHVLKREISNAEYSKVMSDICESKGSAWILK 687


>ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|10177619|dbj|BAB10766.1|
            unnamed protein product [Arabidopsis thaliana]
            gi|332008443|gb|AED95826.1| SIN-like protein [Arabidopsis
            thaliana]
          Length = 689

 Score =  134 bits (336), Expect = 4e-29
 Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 20/250 (8%)
 Frame = +3

Query: 3    ERRILKHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGERMHAPTPSGKRAKV 182
            ER +LK WKFKE TD  +I++ PEIV EQ+  W  +  N+ KS        + + KR  V
Sbjct: 443  ERHVLKDWKFKEPTDVSFIKSYPEIVKEQDIFWTDKRENL-KSRITAQGGKSRADKRRNV 501

Query: 183  VDGA---------------RGGKDKPVNTAMSTLSTETLEHL----PKILLKIFQDQKIR 305
            V  +               +GG  K  NT    ++ E  E L    PK L K+FQ  K+ 
Sbjct: 502  VGTSSSVTVKPEVPTTLSDKGGSSK--NTIHRVVTQEMPEELKKALPKALKKVFQTHKVC 559

Query: 306  SMNSVINGLRGLAISNSSRPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYI 485
               ++  GLR LA+S S+ P+ D      +  A +       EL+ +++ +A ++HG Y+
Sbjct: 560  RYETICQGLRDLAVSTSNNPKADSGMAVNVALAVDAYQG---ELEDVINGVATNIHGSYV 616

Query: 486  -LKSSGSSDFHRLRDVVIDLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELC 662
             + S    ++  LR+VVI L  G  P  KL K E+  A +T+L+++IT+++Y +V+ E+C
Sbjct: 617  SISSPDHPEYDSLREVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKVMHEIC 676

Query: 663  DSSKGSWVLK 692
            +++   WVL+
Sbjct: 677  ETNSSGWVLQ 686


>ref|XP_004300617.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
            [Fragaria vesca subsp. vesca]
          Length = 685

 Score =  132 bits (332), Expect = 1e-28
 Identities = 78/235 (33%), Positives = 134/235 (57%), Gaps = 7/235 (2%)
 Frame = +3

Query: 18   KHWKFKESTDFIYIRNNPEIVDEQEKAWLVRWNNIIKSLGER--MHAPTPSGKRAKVVDG 191
            + WK KE +D  +   +P+I + QE+ W      ++++L     +   + S K  K+ + 
Sbjct: 450  RDWKLKEQSDVSFAELHPDISESQEQIWERMDKQLVEALKPHRDLKNASMSSKTGKLPNS 509

Query: 192  ARGGKDKPVNTAMS----TLSTETLEHLPKILLKIFQDQKIRSMNSVINGLRGLAISNSS 359
             +G  +K  + A S    T+S ETL  LP+ + ++F+ +K+ S   + + L  + +  S 
Sbjct: 510  DKG-PNKSASGAPSGGVRTMSDETLAVLPQAIKEVFKTRKVCSFQLICDTLGNMTLERSQ 568

Query: 360  RPREDPRTRAIINAATNGASAPVTELQAIVSQIAVDVHGVYILKSSGSSDFH-RLRDVVI 536
              + DP +R +  A  NG +AP  EL+ +++Q AV++ GVY+LKSS     H +LRDVVI
Sbjct: 569  HAKVDPNSRKL-TAVRNGLAAPPEELKNVITQFAVEIGGVYVLKSSSEHPEHDQLRDVVI 627

Query: 537  DLFRGKEPNAKLNKQEIRIAAKTRLQKDITDSDYNQVIRELCDSSKGSWVLKSGD 701
             L +GK     + K ++ +AA+  L ++I++++YN+V+ ELC S    W LKSGD
Sbjct: 628  KLLQGKN-KGPIKKLDVTVAAQEELGREISNNEYNKVMNELCVSKGSQWYLKSGD 681