BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00028403
         (312 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS68693.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...   147   2e-33
gb|ABQ42089.1| ribulose bisphosphate carboxylase small chain (Ru...   147   2e-33
dbj|BAI53118.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   146   3e-33
gb|ABK96567.1| unknown [Populus trichocarpa x Populus deltoides]      145   4e-33
gb|ABK96590.1| unknown [Populus trichocarpa x Populus deltoides]      145   4e-33
gb|ABQ42164.1| ribulose bisphosphate carboxylase small chain (Ru...   145   5e-33
gb|ABQ42090.1| ribulose bisphosphate carboxylase small chain (Ru...   145   5e-33
ref|XP_002329284.1| predicted protein [Populus trichocarpa] gi|5...   145   5e-33
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   144   9e-33
emb|CAD11990.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   143   2e-32
gb|ABK96431.1| unknown [Populus trichocarpa x Populus deltoides]      143   2e-32
ref|XP_002305162.2| Ribulose bisphosphate carboxylase small chai...   143   2e-32
gb|ABK95229.1| unknown [Populus trichocarpa] gi|118486831|gb|ABK...   143   2e-32
ref|XP_004299075.1| PREDICTED: ribulose bisphosphate carboxylase...   143   3e-32
gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subun...   142   3e-32
dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   142   5e-32
ref|XP_002521232.1| Ribulose bisphosphate carboxylase small chai...   142   5e-32
sp|P24007.1|RBS_PYRPY RecName: Full=Ribulose bisphosphate carbox...   142   6e-32
gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase s...   142   6e-32
sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carbo...   142   6e-32

>gb|ACS68693.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Sonneratia alba] gi|241865463|gb|ACS68764.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Sonneratia alba]
          Length = 173

 Score =  147 bits (370), Expect = 2e-33
 Identities = 68/84 (80%), Positives = 75/84 (89%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+MVAPF+GLKS SAFP T K+ADITS++SNGGRV CMQVWPP GLKKFETLSYLPD
Sbjct: 12  PAQASMVAPFTGLKSSSAFPTTRKTADITSLASNGGRVQCMQVWPPEGLKKFETLSYLPD 71

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           LT EQL KEI+YL+RNGW PCLEF
Sbjct: 72  LTREQLIKEIEYLIRNGWFPCLEF 95


>gb|ABQ42089.1| ribulose bisphosphate carboxylase small chain (RuBisCO small
           subunit) [Sonneratia alba]
          Length = 178

 Score =  147 bits (370), Expect = 2e-33
 Identities = 68/84 (80%), Positives = 75/84 (89%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+MVAPF+GLKS SAFP T K+ADITS++SNGGRV CMQVWPP GLKKFETLSYLPD
Sbjct: 13  PAQASMVAPFTGLKSSSAFPTTRKTADITSLASNGGRVQCMQVWPPEGLKKFETLSYLPD 72

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           LT EQL KEI+YL+RNGW PCLEF
Sbjct: 73  LTREQLIKEIEYLIRNGWFPCLEF 96


>dbj|BAI53118.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Eucalyptus globulus]
          Length = 181

 Score =  146 bits (368), Expect = 3e-33
 Identities = 69/84 (82%), Positives = 73/84 (86%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA MVAPF+GLKS SAFPVT KS DITS+ SNGGRV CMQVWPP GLKKFETLSYLP 
Sbjct: 19  PVQAAMVAPFTGLKSASAFPVTRKSNDITSLPSNGGRVQCMQVWPPVGLKKFETLSYLPP 78

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           LT  QL+KEIDYLLR+GWVPCLEF
Sbjct: 79  LTPTQLAKEIDYLLRSGWVPCLEF 102


>gb|ABK96567.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 181

 Score =  145 bits (367), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 76/85 (89%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSA-DITSISSNGGRVNCMQVWPPTGLKKFETLSYLP 237
           P QA MVAPF+GLKS SAFPVT K+  DITSI+SNGGRV CMQVWPPTGLKKFETLSYLP
Sbjct: 18  PAQANMVAPFNGLKSTSAFPVTRKANNDITSIASNGGRVQCMQVWPPTGLKKFETLSYLP 77

Query: 238 DLTVEQLSKEIDYLLRNGWVPCLEF 312
           DLT EQL++EI+YLLRN WVPCLEF
Sbjct: 78  DLTTEQLAREIEYLLRNKWVPCLEF 102


>gb|ABK96590.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 189

 Score =  145 bits (367), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 76/85 (89%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSA-DITSISSNGGRVNCMQVWPPTGLKKFETLSYLP 237
           P QA MVAPF+GLKS SAFPVT K+  DITSI+SNGGRV CMQVWPPTGLKKFETLSYLP
Sbjct: 18  PAQANMVAPFNGLKSTSAFPVTRKANNDITSIASNGGRVQCMQVWPPTGLKKFETLSYLP 77

Query: 238 DLTVEQLSKEIDYLLRNGWVPCLEF 312
           DLT EQL++EI+YLLRN WVPCLEF
Sbjct: 78  DLTTEQLAREIEYLLRNKWVPCLEF 102


>gb|ABQ42164.1| ribulose bisphosphate carboxylase small chain (RuBisCO small
           subunit) [Sonneratia ovata]
          Length = 178

 Score =  145 bits (366), Expect = 5e-33
 Identities = 67/84 (79%), Positives = 74/84 (88%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+M APF+GLKS SAFP T K+ADITS++SNGGRV CMQVWPP GLKKFETLSYLPD
Sbjct: 13  PAQASMAAPFTGLKSSSAFPTTRKTADITSLASNGGRVQCMQVWPPEGLKKFETLSYLPD 72

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           LT EQL KEI+YL+RNGW PCLEF
Sbjct: 73  LTREQLIKEIEYLIRNGWFPCLEF 96


>gb|ABQ42090.1| ribulose bisphosphate carboxylase small chain (RuBisCO small
           subunit) [Sonneratia apetala]
          Length = 178

 Score =  145 bits (366), Expect = 5e-33
 Identities = 67/84 (79%), Positives = 75/84 (89%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+MVAPF+GLKS SAFP T K+ADITS++SNGGRV CMQVWPP GLKKFETLSYLPD
Sbjct: 13  PAQASMVAPFTGLKSSSAFPTTRKTADITSLASNGGRVQCMQVWPPEGLKKFETLSYLPD 72

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           L+ EQL KEI+YL+RNGW PCLEF
Sbjct: 73  LSREQLIKEIEYLIRNGWFPCLEF 96


>ref|XP_002329284.1| predicted protein [Populus trichocarpa]
           gi|566171611|ref|XP_006383456.1| Ribulose bisphosphate
           carboxylase small chain 1A family protein [Populus
           trichocarpa] gi|118488169|gb|ABK95904.1| unknown
           [Populus trichocarpa] gi|118488741|gb|ABK96181.1|
           unknown [Populus trichocarpa]
           gi|550339067|gb|ERP61253.1| Ribulose bisphosphate
           carboxylase small chain 1A family protein [Populus
           trichocarpa]
          Length = 181

 Score =  145 bits (366), Expect = 5e-33
 Identities = 70/85 (82%), Positives = 76/85 (89%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSA-DITSISSNGGRVNCMQVWPPTGLKKFETLSYLP 237
           P QA MVAPF+GLKS SAFPVT K+  DITSI+SNGGRV CMQVWPPTGLKKFETLSYLP
Sbjct: 18  PAQANMVAPFNGLKSTSAFPVTRKANNDITSIASNGGRVQCMQVWPPTGLKKFETLSYLP 77

Query: 238 DLTVEQLSKEIDYLLRNGWVPCLEF 312
           DLT EQL++EI+YLLRN WVPCLEF
Sbjct: 78  DLTTEQLAQEIEYLLRNKWVPCLEF 102


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score =  144 bits (364), Expect = 9e-33
 Identities = 67/84 (79%), Positives = 74/84 (88%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+MVAPF+GLKS +AFPVT K  DITS+ SNGGRV CM+VWPP GLKKFETLSYLP 
Sbjct: 19  PAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPQ 78

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           LT EQLSKE+DYLLR+GWVPCLEF
Sbjct: 79  LTQEQLSKEVDYLLRSGWVPCLEF 102


>emb|CAD11990.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Coffea arabica] gi|24940140|emb|CAD11991.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Coffea arabica]
          Length = 181

 Score =  143 bits (361), Expect = 2e-32
 Identities = 64/84 (76%), Positives = 76/84 (90%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+MVAPF+GLK+ S+FP++ KS DITS+++NGGRV CMQVWPP GLKK+ETLSYLPD
Sbjct: 19  PAQASMVAPFNGLKAASSFPISKKSVDITSLATNGGRVQCMQVWPPRGLKKYETLSYLPD 78

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           LT EQL KEIDYL+R+GWVPCLEF
Sbjct: 79  LTDEQLLKEIDYLIRSGWVPCLEF 102


>gb|ABK96431.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 182

 Score =  143 bits (361), Expect = 2e-32
 Identities = 69/85 (81%), Positives = 76/85 (89%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPV-THKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLP 237
           P QA MVAPF+GLKS +AFPV T K+ DITSI+SNGGRV CMQVWPPTGLKKFETLSYLP
Sbjct: 19  PAQANMVAPFNGLKSTAAFPVSTRKANDITSIASNGGRVQCMQVWPPTGLKKFETLSYLP 78

Query: 238 DLTVEQLSKEIDYLLRNGWVPCLEF 312
           DLT E+L+KEIDYLLR+ WVPCLEF
Sbjct: 79  DLTEEELAKEIDYLLRSKWVPCLEF 103


>ref|XP_002305162.2| Ribulose bisphosphate carboxylase small chain 1A family protein
           [Populus trichocarpa] gi|118487084|gb|ABK95372.1|
           unknown [Populus trichocarpa]
           gi|118488041|gb|ABK95841.1| unknown [Populus
           trichocarpa] gi|550340699|gb|EEE85673.2| Ribulose
           bisphosphate carboxylase small chain 1A family protein
           [Populus trichocarpa]
          Length = 182

 Score =  143 bits (361), Expect = 2e-32
 Identities = 69/85 (81%), Positives = 76/85 (89%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPV-THKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLP 237
           P QA MVAPF+GLKS +AFPV T K+ DITSI+SNGGRV CMQVWPPTGLKKFETLSYLP
Sbjct: 19  PAQANMVAPFNGLKSAAAFPVSTRKANDITSIASNGGRVQCMQVWPPTGLKKFETLSYLP 78

Query: 238 DLTVEQLSKEIDYLLRNGWVPCLEF 312
           DLT E+L+KEIDYLLR+ WVPCLEF
Sbjct: 79  DLTEEELAKEIDYLLRSKWVPCLEF 103


>gb|ABK95229.1| unknown [Populus trichocarpa] gi|118486831|gb|ABK95250.1| unknown
           [Populus trichocarpa]
          Length = 182

 Score =  143 bits (361), Expect = 2e-32
 Identities = 69/85 (81%), Positives = 76/85 (89%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPV-THKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLP 237
           P QA MVAPF+GLKS +AFPV T K+ DITSI+SNGGRV CMQVWPPTGLKKFETLSYLP
Sbjct: 19  PVQANMVAPFNGLKSAAAFPVSTRKANDITSIASNGGRVQCMQVWPPTGLKKFETLSYLP 78

Query: 238 DLTVEQLSKEIDYLLRNGWVPCLEF 312
           DLT E+L+KEIDYLLR+ WVPCLEF
Sbjct: 79  DLTEEELAKEIDYLLRSKWVPCLEF 103


>ref|XP_004299075.1| PREDICTED: ribulose bisphosphate carboxylase small chain 1,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 180

 Score =  143 bits (360), Expect = 3e-32
 Identities = 65/84 (77%), Positives = 75/84 (89%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+MVAPF+GLKS SAFPVT K+ DIT+++SNGGRV CMQVWPP GLKKFETLSYLP 
Sbjct: 18  PVQASMVAPFNGLKSASAFPVTRKANDITTLASNGGRVQCMQVWPPVGLKKFETLSYLPP 77

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           L+VE L+KE++YLLRN WVPCLEF
Sbjct: 78  LSVESLAKEVEYLLRNKWVPCLEF 101


>gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subunit [Malus
           domestica x Pyrus communis]
          Length = 179

 Score =  142 bits (359), Expect = 3e-32
 Identities = 67/84 (79%), Positives = 72/84 (85%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA MVAPF+GLKS SAFPVT KS DITSI+SNGGRV CMQVWPP GLKKFETLSYLP 
Sbjct: 17  PAQARMVAPFTGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPP 76

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           L+ E L+KE+DYLLR  WVPCLEF
Sbjct: 77  LSTESLAKEVDYLLRKNWVPCLEF 100


>dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Eucalyptus globulus]
          Length = 179

 Score =  142 bits (358), Expect = 5e-32
 Identities = 68/85 (80%), Positives = 75/85 (88%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSA-DITSISSNGGRVNCMQVWPPTGLKKFETLSYLP 237
           P QATMVAPF+GLKS SAFPVT KS+ DITS+SSNGGRV CMQVWPP G KKFETLSYLP
Sbjct: 16  PAQATMVAPFTGLKSASAFPVTRKSSEDITSLSSNGGRVQCMQVWPPIGKKKFETLSYLP 75

Query: 238 DLTVEQLSKEIDYLLRNGWVPCLEF 312
            L+ E L+KE+DYLLR+GWVPCLEF
Sbjct: 76  PLSPESLAKEVDYLLRSGWVPCLEF 100


>ref|XP_002521232.1| Ribulose bisphosphate carboxylase small chain 1B, chloroplast
           precursor, putative [Ricinus communis]
           gi|223539597|gb|EEF41184.1| Ribulose bisphosphate
           carboxylase small chain 1B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 181

 Score =  142 bits (358), Expect = 5e-32
 Identities = 67/85 (78%), Positives = 75/85 (88%), Gaps = 1/85 (1%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSA-DITSISSNGGRVNCMQVWPPTGLKKFETLSYLP 237
           P QATMVAPF+GLKS ++FPVT K+  DITSI+SNGGRV CMQVWPP G KKFETLSYLP
Sbjct: 16  PAQATMVAPFTGLKSAASFPVTRKANNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLP 75

Query: 238 DLTVEQLSKEIDYLLRNGWVPCLEF 312
           DLT EQL+KE+DYLLR GW+PCLEF
Sbjct: 76  DLTDEQLAKEVDYLLRKGWIPCLEF 100


>sp|P24007.1|RBS_PYRPY RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|218021|dbj|BAA00450.1| RuBisCO small
           subunit [Pyrus pyrifolia var. culta]
          Length = 183

 Score =  142 bits (357), Expect = 6e-32
 Identities = 67/84 (79%), Positives = 72/84 (85%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA MVAPF+GLKS SAFPVT KS DITSI+SNGGRV CMQVWPP GLKKFETLSYLP 
Sbjct: 21  PAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPP 80

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           L+ E L+KE+DYLLR  WVPCLEF
Sbjct: 81  LSSESLAKEVDYLLRKNWVPCLEF 104


>gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
           [Mesembryanthemum crystallinum]
          Length = 180

 Score =  142 bits (357), Expect = 6e-32
 Identities = 67/84 (79%), Positives = 72/84 (85%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+MVAPF+GLKSVSAFPVT KS DITSI+SNGGRV CMQVWPP G KKFETLSYLP 
Sbjct: 16  PAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPP 75

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           L+ E L KE+ YLL NGWVPCLEF
Sbjct: 76  LSEESLMKEVQYLLNNGWVPCLEF 99


>sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
           chloroplastic; Short=RuBisCO small subunit 2; Flags:
           Precursor gi|304444|gb|AAA03694.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Mesembryanthemum crystallinum]
          Length = 180

 Score =  142 bits (357), Expect = 6e-32
 Identities = 67/84 (79%), Positives = 72/84 (85%)
 Frame = +1

Query: 61  PTQATMVAPFSGLKSVSAFPVTHKSADITSISSNGGRVNCMQVWPPTGLKKFETLSYLPD 240
           P QA+MVAPF+GLKSVSAFPVT KS DITSI+SNGGRV CMQVWPP G KKFETLSYLP 
Sbjct: 16  PAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPP 75

Query: 241 LTVEQLSKEIDYLLRNGWVPCLEF 312
           L+ E L KE+ YLL NGWVPCLEF
Sbjct: 76  LSEESLMKEVQYLLNNGWVPCLEF 99