BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00027975
         (263 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ...    82   1e-13
ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_...    82   1e-13
ref|XP_001784402.1| predicted protein [Physcomitrella patens] gi...    82   1e-13
gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK257...    80   3e-13
gb|ABK21111.1| unknown [Picea sitchensis]                              80   3e-13
ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, I...    80   4e-13
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I...    80   4e-13
ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, ...    80   4e-13
ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, part...    79   5e-13
ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp....    79   5e-13
ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, I...    79   8e-13
dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]     79   8e-13
ref|XP_005851333.1| hypothetical protein CHLNCDRAFT_19308 [Chlor...    79   8e-13
ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, I...    77   2e-12
ref|XP_005652188.1| hypothetical protein COCSUDRAFT_26843 [Cocco...    77   2e-12
ref|XP_002973594.1| hypothetical protein SELMODRAFT_173570 [Sela...    77   2e-12
gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 k...    77   2e-12
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I...    77   3e-12
ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutr...    76   4e-12
ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutr...    76   4e-12

>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
           1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
           DNA-directed RNA polymerase I, II, and III polypeptide
           isoform 2, partial [Zea mays]
          Length = 100

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 36/38 (94%), Positives = 38/38 (100%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 63  DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 100


>ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_001172391.1|
           Os01g0530366 [Oryza sativa Japonica Group]
           gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza
           sativa Japonica Group] gi|242048352|ref|XP_002461922.1|
           hypothetical protein SORBIDRAFT_02g010660 [Sorghum
           bicolor] gi|242078439|ref|XP_002443988.1| hypothetical
           protein SORBIDRAFT_07g005435 [Sorghum bicolor]
           gi|514726952|ref|XP_004956106.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Setaria italica] gi|195609858|gb|ACG26759.1|
           DNA-directed RNA polymerases I, II, and III 7.3 kDa
           polypeptide [Zea mays] gi|195620974|gb|ACG32317.1|
           DNA-directed RNA polymerases I, II, and III 7.3 kDa
           polypeptide [Zea mays] gi|195645780|gb|ACG42358.1|
           DNA-directed RNA polymerases I, II, and III 7.3 kDa
           polypeptide [Zea mays] gi|195646246|gb|ACG42591.1|
           DNA-directed RNA polymerases I, II, and III 7.3 kDa
           polypeptide [Zea mays] gi|218188380|gb|EEC70807.1|
           hypothetical protein OsI_02267 [Oryza sativa Indica
           Group] gi|222618595|gb|EEE54727.1| hypothetical protein
           OsJ_02072 [Oryza sativa Japonica Group]
           gi|241925299|gb|EER98443.1| hypothetical protein
           SORBIDRAFT_02g010660 [Sorghum bicolor]
           gi|241940338|gb|EES13483.1| hypothetical protein
           SORBIDRAFT_07g005435 [Sorghum bicolor]
           gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa
           Japonica Group] gi|255676033|dbj|BAH92949.1|
           Os05g0151800 [Oryza sativa Japonica Group]
          Length = 52

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 36/38 (94%), Positives = 38/38 (100%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 15  DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>ref|XP_001784402.1| predicted protein [Physcomitrella patens]
           gi|162664073|gb|EDQ50807.1| predicted protein
           [Physcomitrella patens]
          Length = 56

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 36/38 (94%), Positives = 38/38 (100%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGA+NTLKPGDVIQCRECGYRILYKKRTRRIVQF+AR
Sbjct: 19  DCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56


>gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK25799.1| unknown
           [Picea sitchensis] gi|148909877|gb|ABR18025.1| unknown
           [Picea sitchensis] gi|224284970|gb|ACN40214.1| unknown
           [Picea sitchensis] gi|224286085|gb|ACN40753.1| unknown
           [Picea sitchensis]
          Length = 53

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 35/38 (92%), Positives = 38/38 (100%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGAEN+LKPGDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 16  DCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53


>gb|ABK21111.1| unknown [Picea sitchensis]
          Length = 53

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 35/38 (92%), Positives = 38/38 (100%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGAEN+LKPGDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 16  DCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53


>ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Solanum lycopersicum]
          Length = 52

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 15  DCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Vitis vinifera]
           gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4 [Vitis
           vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
           product [Vitis vinifera]
          Length = 51

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 14  DCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           12-like [Glycine max] gi|356560019|ref|XP_003548293.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 12 [Glycine max]
           gi|567912183|ref|XP_006448405.1| hypothetical protein
           CICLE_v10017429mg [Citrus clementina]
           gi|255630274|gb|ACU15492.1| unknown [Glycine max]
           gi|557551016|gb|ESR61645.1| hypothetical protein
           CICLE_v10017429mg [Citrus clementina]
           gi|561025849|gb|ESW24534.1| hypothetical protein
           PHAVU_004G138700g [Phaseolus vulgaris]
          Length = 51

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 14  DCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, partial [Capsella rubella]
           gi|482553592|gb|EOA17785.1| hypothetical protein
           CARUB_v10006178mg, partial [Capsella rubella]
          Length = 68

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 34/38 (89%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQ++AR
Sbjct: 31  DCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 68


>ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297316495|gb|EFH46918.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 52

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 34/38 (89%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQ++AR
Sbjct: 15  DCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 52


>ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Brachypodium distachyon]
           gi|357145250|ref|XP_003573577.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Brachypodium distachyon]
          Length = 52

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGAENTLK GDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 15  DCGAENTLKSGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 52

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGAENTLK GDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 15  DCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>ref|XP_005851333.1| hypothetical protein CHLNCDRAFT_19308 [Chlorella variabilis]
           gi|307110996|gb|EFN59231.1| hypothetical protein
           CHLNCDRAFT_19308 [Chlorella variabilis]
          Length = 62

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 33/38 (86%), Positives = 38/38 (100%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGAENTLKPGDVI+CRECGYRILYKKRT+R+VQ++AR
Sbjct: 24  DCGAENTLKPGDVIRCRECGYRILYKKRTKRVVQYEAR 61


>ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Setaria italica]
          Length = 52

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 33/38 (86%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG+ENTLKPGDVIQCR+CGYRILYKKRT RIVQ++AR
Sbjct: 15  DCGSENTLKPGDVIQCRDCGYRILYKKRTHRIVQYEAR 52


>ref|XP_005652188.1| hypothetical protein COCSUDRAFT_26843 [Coccomyxa subellipsoidea
           C-169] gi|384254170|gb|EIE27644.1| hypothetical protein
           COCSUDRAFT_26843 [Coccomyxa subellipsoidea C-169]
          Length = 60

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 33/38 (86%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLKPGDVI+CRECGYRILYKKRTRR+VQ++AR
Sbjct: 23  DCGHENTLKPGDVIRCRECGYRILYKKRTRRVVQYEAR 60


>ref|XP_002973594.1| hypothetical protein SELMODRAFT_173570 [Selaginella moellendorffii]
           gi|300158632|gb|EFJ25254.1| hypothetical protein
           SELMODRAFT_173570 [Selaginella moellendorffii]
          Length = 67

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 33/38 (86%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG +N+LKPGDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 30  DCGTDNSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 67


>gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
           [Zea mays]
          Length = 52

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCGAENTLKPGDVIQ RECGYRILYKKRTRRIVQ++AR
Sbjct: 15  DCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52


>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Cucumis sativus]
           gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Cucumis sativus]
          Length = 51

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 34/38 (89%), Positives = 36/38 (94%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLK GDVIQCRECGYRILYKKRTRRIVQ++AR
Sbjct: 14  DCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutrema salsugineum]
           gi|557106544|gb|ESQ46859.1| hypothetical protein
           EUTSA_v10028022mg [Eutrema salsugineum]
          Length = 51

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 33/38 (86%), Positives = 36/38 (94%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLK GDVIQCRECGYRILYKKRTRR+VQ++AR
Sbjct: 14  DCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51


>ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutrema salsugineum]
           gi|567131670|ref|XP_006392764.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
           gi|567131674|ref|XP_006392765.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
           gi|557089341|gb|ESQ30049.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
           gi|557089342|gb|ESQ30050.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
           gi|557089343|gb|ESQ30051.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
          Length = 51

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 33/38 (86%), Positives = 36/38 (94%)
 Frame = -3

Query: 261 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQFQAR 148
           DCG ENTLK GDVIQCRECGYRILYKKRTRR+VQ++AR
Sbjct: 14  DCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51