BLASTX nr result
ID: Zingiber24_contig00027465
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00027465
(341 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006355563.1| PREDICTED: pentatricopeptide repeat-containi... 80 3e-13
ref|XP_004232997.1| PREDICTED: pentatricopeptide repeat-containi... 79 8e-13
ref|XP_006377256.1| hypothetical protein POPTR_0011s03060g [Popu... 76 5e-12
ref|XP_002316747.1| predicted protein [Populus trichocarpa] 76 5e-12
ref|XP_004164255.1| PREDICTED: pentatricopeptide repeat-containi... 75 7e-12
emb|CBI30774.3| unnamed protein product [Vitis vinifera] 75 9e-12
ref|XP_006467567.1| PREDICTED: pentatricopeptide repeat-containi... 75 1e-11
ref|XP_006658667.1| PREDICTED: pentatricopeptide repeat-containi... 73 3e-11
ref|XP_006449586.1| hypothetical protein CICLE_v10016169mg [Citr... 73 3e-11
gb|EOY27863.1| Pentatricopeptide repeat superfamily protein [The... 71 1e-10
gb|EMJ13198.1| hypothetical protein PRUPE_ppa011078mg [Prunus pe... 71 1e-10
gb|EMS61377.1| hypothetical protein TRIUR3_30925 [Triticum urartu] 71 2e-10
dbj|BAJ85448.1| predicted protein [Hordeum vulgare subsp. vulgar... 71 2e-10
gb|EMT27958.1| hypothetical protein F775_15525 [Aegilops tauschii] 70 2e-10
dbj|BAC83317.1| pentatricopeptide (PPR) repeat-containing protei... 70 2e-10
ref|XP_003562962.1| PREDICTED: pentatricopeptide repeat-containi... 70 2e-10
ref|NP_001059918.2| Os07g0545900 [Oryza sativa Japonica Group] g... 70 2e-10
ref|XP_004957944.1| PREDICTED: pentatricopeptide repeat-containi... 69 5e-10
ref|XP_003546058.1| PREDICTED: pentatricopeptide repeat-containi... 69 5e-10
gb|ACU23441.1| unknown [Glycine max] 69 5e-10
>ref|XP_006355563.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like isoform X1 [Solanum tuberosum]
gi|565378234|ref|XP_006355564.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like isoform X2 [Solanum tuberosum]
gi|565378236|ref|XP_006355565.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like isoform X3 [Solanum tuberosum]
Length = 265
Score = 80.1 bits (196), Expect = 3e-13
Identities = 34/53 (64%), Positives = 43/53 (81%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+V R+ RAF+MLGQ DK+ L+ K+Y+S W+Y+HFNGE RVR
Sbjct: 209 MEELGVKPDEDTVGRVARAFQMLGQEDKQKLVLKKYQSRWKYVHFNGERARVR 261
>ref|XP_004232997.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like [Solanum lycopersicum]
Length = 265
Score = 78.6 bits (192), Expect = 8e-13
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+V R+ RAF+MLGQ D + L+ K+Y+S W+Y+HFNGE RVR
Sbjct: 209 MEELGVKPDEDTVRRVARAFQMLGQEDNQKLVLKKYQSRWKYVHFNGERARVR 261
>ref|XP_006377256.1| hypothetical protein POPTR_0011s03060g [Populus trichocarpa]
gi|550327464|gb|ERP55053.1| hypothetical protein
POPTR_0011s03060g [Populus trichocarpa]
Length = 262
Score = 75.9 bits (185), Expect = 5e-12
Identities = 32/53 (60%), Positives = 42/53 (79%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+V R+ RAF+ LGQ +KR+L+ +RY W+Y+HFNGE VRV+
Sbjct: 203 MEELGVRPDEDTVWRVARAFKKLGQEEKRELVLERYLCKWKYIHFNGERVRVK 255
>ref|XP_002316747.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 75.9 bits (185), Expect = 5e-12
Identities = 32/53 (60%), Positives = 42/53 (79%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+V R+ RAF+ LGQ +KR+L+ +RY W+Y+HFNGE VRV+
Sbjct: 213 MEELGVRPDEDTVWRVARAFKKLGQEEKRELVLERYLCKWKYIHFNGERVRVK 265
>ref|XP_004164255.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like [Cucumis sativus]
Length = 270
Score = 75.5 bits (184), Expect = 7e-12
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+V R+ RAF+ LGQ D R +++KRY W+Y+HF GE VRVR
Sbjct: 209 MEELGVKPDEDTVRRVCRAFQKLGQEDNRKMVYKRYSCQWKYIHFKGERVRVR 261
>emb|CBI30774.3| unnamed protein product [Vitis vinifera]
Length = 277
Score = 75.1 bits (183), Expect = 9e-12
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+V R+ AF+ LGQ DK+ L+ K+Y+ W+Y+HFNGE VRVR
Sbjct: 217 MEELGVKPDEDTVRRVACAFQTLGQEDKQKLVLKKYQCKWKYIHFNGERVRVR 269
>ref|XP_006467567.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like [Citrus sinensis]
Length = 281
Score = 74.7 bits (182), Expect = 1e-11
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVRSTETY 166
MEELGV PD D+V RI AF+ +GQ+DK+ L+ K+Y S W+Y+HF GE VRVR Y
Sbjct: 218 MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRRDAWY 275
>ref|XP_006658667.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like [Oryza brachyantha]
Length = 230
Score = 73.2 bits (178), Expect = 3e-11
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
+EELGV PD D+ RIGRAF LGQ DK L+ K+Y W+Y+HFNGE RVR
Sbjct: 172 IEELGVHPDEDTTRRIGRAFAALGQEDKERLVLKKYLKKWKYIHFNGERARVR 224
>ref|XP_006449586.1| hypothetical protein CICLE_v10016169mg [Citrus clementina]
gi|557552197|gb|ESR62826.1| hypothetical protein
CICLE_v10016169mg [Citrus clementina]
Length = 284
Score = 73.2 bits (178), Expect = 3e-11
Identities = 32/58 (55%), Positives = 42/58 (72%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVRSTETY 166
MEELGV PD D+V RI AF+ +GQ++K+ L+ K+Y S W+Y+HF GE VRVR Y
Sbjct: 221 MEELGVRPDEDTVRRIASAFQRVGQDEKQKLVLKKYLSKWKYIHFKGERVRVRRDAWY 278
>gb|EOY27863.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
Length = 276
Score = 71.2 bits (173), Expect = 1e-10
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVRSTET 169
MEEL V PD ++V ++ RAF+ LGQ DK+ L+ +RY S W+Y+HFNGE VRV E+
Sbjct: 217 MEELCVRPDENTVRKVARAFQKLGQEDKQKLVLRRYLSKWKYIHFNGERVRVTRYES 273
>gb|EMJ13198.1| hypothetical protein PRUPE_ppa011078mg [Prunus persica]
Length = 224
Score = 71.2 bits (173), Expect = 1e-10
Identities = 29/54 (53%), Positives = 41/54 (75%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVRS 178
MEELGV PD D+V R+ RAF+ LGQ + + L+ +RY+ W+Y+HF GE V+VR+
Sbjct: 160 MEELGVKPDEDTVRRVARAFKELGQEENKTLVLRRYQCKWKYIHFKGERVKVRT 213
>gb|EMS61377.1| hypothetical protein TRIUR3_30925 [Triticum urartu]
Length = 300
Score = 70.9 bits (172), Expect = 2e-10
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+ RIGRAF GQ DK+ + ++Y W+Y+HFNGE VRVR
Sbjct: 242 MEELGVRPDEDTTRRIGRAFATSGQEDKQKPVLEKYLKKWKYIHFNGERVRVR 294
>dbj|BAJ85448.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511571|dbj|BAJ91930.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|326517433|dbj|BAK00083.1|
predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531618|dbj|BAJ97813.1| predicted protein [Hordeum
vulgare subsp. vulgare]
Length = 251
Score = 70.9 bits (172), Expect = 2e-10
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+ RIGRAF GQ DK+ + ++Y W+Y+HFNGE VRVR
Sbjct: 193 MEELGVRPDEDTTRRIGRAFATSGQEDKQKPVLEKYLKKWKYIHFNGERVRVR 245
>gb|EMT27958.1| hypothetical protein F775_15525 [Aegilops tauschii]
Length = 280
Score = 70.5 bits (171), Expect = 2e-10
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+ R+GRAF GQ DK+ + ++Y W+Y+HFNGE VRVR
Sbjct: 222 MEELGVRPDEDTTRRVGRAFASSGQEDKQKPVLEKYLKKWKYIHFNGERVRVR 274
>dbj|BAC83317.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|125600619|gb|EAZ40195.1| hypothetical protein
OsJ_24640 [Oryza sativa Japonica Group]
Length = 253
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/53 (58%), Positives = 39/53 (73%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+ RIGRAF LGQ DK ++ ++Y ++Y+HFNGE VRVR
Sbjct: 195 MEELGVHPDEDTTRRIGRAFVTLGQEDKEKIVLEKYLKKYKYMHFNGERVRVR 247
>ref|XP_003562962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like [Brachypodium distachyon]
Length = 241
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+ RIGRAF GQ DK+ + ++Y W+Y+HFNGE VRVR
Sbjct: 183 MEELGVHPDEDTTRRIGRAFASSGQEDKQKPVLEKYLKKWKYIHFNGERVRVR 235
>ref|NP_001059918.2| Os07g0545900 [Oryza sativa Japonica Group]
gi|255677866|dbj|BAF21832.2| Os07g0545900, partial
[Oryza sativa Japonica Group]
Length = 63
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/53 (58%), Positives = 39/53 (73%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+ RIGRAF LGQ DK ++ ++Y ++Y+HFNGE VRVR
Sbjct: 5 MEELGVHPDEDTTRRIGRAFVTLGQEDKEKIVLEKYLKKYKYMHFNGERVRVR 57
>ref|XP_004957944.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like [Setaria italica]
Length = 248
Score = 69.3 bits (168), Expect = 5e-10
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVR 181
MEELGV PD D+ RIG+AF GQ +K + RY W+Y+HFNGE VRVR
Sbjct: 190 MEELGVRPDEDTARRIGKAFVAFGQEEKEKYVLDRYLKKWKYIHFNGERVRVR 242
>ref|XP_003546058.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like isoform X1 [Glycine max]
gi|571517206|ref|XP_006597502.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g18975,
chloroplastic-like isoform X2 [Glycine max]
Length = 288
Score = 69.3 bits (168), Expect = 5e-10
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVRS 178
MEEL + PD D+V R+ RAF LG +KR L+ K+Y W+Y+HFNGE VRVR+
Sbjct: 225 MEELRLKPDEDTVRRVARAFRELGDEEKRKLVIKQYGLKWKYIHFNGERVRVRT 278
>gb|ACU23441.1| unknown [Glycine max]
Length = 288
Score = 69.3 bits (168), Expect = 5e-10
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = -3
Query: 339 MEELGVTPDNDSVTRIGRAFEMLGQNDKRDLLFKRYKSNWRYLHFNGEHVRVRS 178
MEEL + PD D+V R+ RAF LG +KR L+ K+Y W+Y+HFNGE VRVR+
Sbjct: 225 MEELRLKPDEDTVRRVARAFRELGDEEKRKLVIKQYGLKWKYIHFNGERVRVRT 278