BLASTX nr result
ID: Zingiber24_contig00027351
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00027351
(279 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 75 9e-12
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 72 6e-11
tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family... 72 6e-11
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 72 6e-11
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 72 6e-11
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 72 6e-11
gb|EMS65535.1| DNA-directed RNA polymerase III subunit RPC1 [Tri... 70 4e-10
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 68 1e-09
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 68 1e-09
gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 67 2e-09
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar... 67 2e-09
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali... 67 2e-09
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana... 67 2e-09
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 65 9e-09
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 65 9e-09
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr... 64 2e-08
ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Caps... 64 2e-08
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 64 2e-08
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab... 64 2e-08
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 64 3e-08
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 75.1 bits (183), Expect = 9e-12
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+D+LPELKY PDPILS
Sbjct: 1359 VSECIIMGIPMQLGTGILKVRQRLDHLPELKYQPDPILS 1397
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+D+LPE KY PDPIL+
Sbjct: 1351 VSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPILA 1389
>tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 336
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+D++PE KY PDPILS
Sbjct: 298 VSECIIMGIPMQLGTGILKVRQRLDHVPEFKYQPDPILS 336
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+D++PE KY PDPILS
Sbjct: 1353 VSECIIMGIPMQLGTGILKVRQRLDHVPEFKYQPDPILS 1391
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+D+LPE KY PDPIL+
Sbjct: 1283 VSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPILA 1321
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+D+LPE KY PDPIL+
Sbjct: 1345 VSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPILA 1383
>gb|EMS65535.1| DNA-directed RNA polymerase III subunit RPC1 [Triticum urartu]
Length = 689
Score = 69.7 bits (169), Expect = 4e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPIL 166
VSECIIMGIPMQLGTGIL+VRQR+ +LPE KY PDPIL
Sbjct: 651 VSECIIMGIPMQLGTGILKVRQRLQDLPEFKYQPDPIL 688
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 68.2 bits (165), Expect = 1e-09
Identities = 31/39 (79%), Positives = 36/39 (92%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+++LPE KY P PI+S
Sbjct: 1078 VSECIIMGIPMQLGTGILKVRQRLESLPEFKYQPAPIMS 1116
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 68.2 bits (165), Expect = 1e-09
Identities = 31/39 (79%), Positives = 36/39 (92%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+++LPE KY P PI+S
Sbjct: 1209 VSECIIMGIPMQLGTGILKVRQRLESLPEFKYQPAPIMS 1247
>gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 832
Score = 67.4 bits (163), Expect = 2e-09
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPIL 166
VSECIIMGIP QLGTGIL+VRQR+ +LPE KY PDPIL
Sbjct: 794 VSECIIMGIPKQLGTGILKVRQRLQDLPEFKYQPDPIL 831
>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 67.0 bits (162), Expect = 2e-09
Identities = 29/39 (74%), Positives = 36/39 (92%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
V+EC+IMGIPM+LGTGIL+V QR D+LP+LKY PDPI+S
Sbjct: 1345 VTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGPDPIIS 1383
>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1391
Score = 67.0 bits (162), Expect = 2e-09
Identities = 29/39 (74%), Positives = 36/39 (92%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
V+EC+IMGIPM+LGTGIL+V QR D+LP+LKY PDPI+S
Sbjct: 1353 VTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGPDPIIS 1391
>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1376
Score = 67.0 bits (162), Expect = 2e-09
Identities = 29/39 (74%), Positives = 36/39 (92%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
V+EC+IMGIPM+LGTGIL+V QR D+LP+LKY PDPI+S
Sbjct: 1338 VTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGPDPIIS 1376
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+ +PEL Y DPI+S
Sbjct: 1781 VSECIIMGIPMQLGTGILKVRQRLQQVPELSYGLDPIIS 1819
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPMQLGTGIL+VRQR+ +PEL Y DPI+S
Sbjct: 1345 VSECIIMGIPMQLGTGILKVRQRLQQVPELSYGLDPIIS 1383
>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
gi|557101978|gb|ESQ42341.1| hypothetical protein
EUTSA_v10012446mg [Eutrema salsugineum]
Length = 1375
Score = 63.9 bits (154), Expect = 2e-08
Identities = 28/39 (71%), Positives = 35/39 (89%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
V+EC+IMGIPM+LGTGIL+V QR D+LP+LKY DPI+S
Sbjct: 1337 VTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGADPIIS 1375
>ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Capsella rubella]
gi|482548169|gb|EOA12363.1| hypothetical protein
CARUB_v10025743mg [Capsella rubella]
Length = 1376
Score = 63.9 bits (154), Expect = 2e-08
Identities = 28/39 (71%), Positives = 35/39 (89%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
V+EC+IMGIPM+LGTGIL+V QR D+LP+LKY DPI+S
Sbjct: 1338 VTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGADPIIS 1376
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 63.9 bits (154), Expect = 2e-08
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
VSECIIMGIPM LG+GIL+VRQR+D+LPE Y PD I+S
Sbjct: 1354 VSECIIMGIPMTLGSGILKVRQRLDHLPEFNYQPDAIIS 1392
>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
Length = 1376
Score = 63.9 bits (154), Expect = 2e-08
Identities = 28/39 (71%), Positives = 35/39 (89%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
V+EC+IMGIPM+LGTGIL+V QR D+LP+LKY DPI+S
Sbjct: 1338 VTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGADPIIS 1376
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 63.5 bits (153), Expect = 3e-08
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = -1
Query: 279 VSECIIMGIPMQLGTGILRVRQRVDNLPELKYAPDPILS 163
V+ECIIMGIPMQ+GTGIL+V QRVD P L+Y PDP+LS
Sbjct: 1357 VTECIIMGIPMQIGTGILKVIQRVDPPPMLRYGPDPVLS 1395