BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00027246
         (770 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi...   173   7e-41
ref|XP_002518527.1| pentatricopeptide repeat-containing protein,...   163   5e-38
ref|XP_002305605.1| pentatricopeptide repeat-containing family p...   160   3e-37
gb|EMJ13917.1| hypothetical protein PRUPE_ppa018797mg [Prunus pe...   158   2e-36
ref|XP_006449088.1| hypothetical protein CICLE_v10018367mg [Citr...   155   1e-35
gb|EOY28616.1| Tetratricopeptide repeat-like superfamily protein...   155   2e-35
ref|XP_004233795.1| PREDICTED: pentatricopeptide repeat-containi...   154   4e-35
ref|XP_006348079.1| PREDICTED: pentatricopeptide repeat-containi...   149   1e-33
ref|XP_006285106.1| hypothetical protein CARUB_v10006439mg [Caps...   132   1e-28
ref|XP_006467990.1| PREDICTED: pentatricopeptide repeat-containi...   129   8e-28
ref|XP_006413812.1| hypothetical protein EUTSA_v10024760mg [Eutr...   124   4e-26
ref|NP_193849.2| pentatricopeptide repeat-containing protein [Ar...   118   3e-24
sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-c...   118   3e-24
ref|XP_002867861.1| predicted protein [Arabidopsis lyrata subsp....    94   7e-17
emb|CAA17536.1| putative protein [Arabidopsis thaliana] gi|72689...    89   2e-15
emb|CBI16890.3| unnamed protein product [Vitis vinifera]               84   4e-14
ref|XP_004298606.1| PREDICTED: pentatricopeptide repeat-containi...    79   2e-12
ref|XP_006346446.1| PREDICTED: pentatricopeptide repeat-containi...    79   2e-12
ref|XP_004231403.1| PREDICTED: pentatricopeptide repeat-containi...    78   3e-12
ref|XP_006826483.1| hypothetical protein AMTR_s00004p00243870 [A...    76   1e-11

>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Vitis vinifera]
          Length = 569

 Score =  173 bits (438), Expect = 7e-41
 Identities = 94/256 (36%), Positives = 149/256 (58%), Gaps = 1/256 (0%)
 Frame = -2

Query: 769 SLSRASQRKDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSS 590
           S+ +A + KDS S  L FVLE YS+ GL   +LE+FR+I       + RSCNALLD+L  
Sbjct: 132 SVIQACRGKDSESPVLGFVLECYSSKGLFIEALEVFRRITIHGYVPSVRSCNALLDSLQR 191

Query: 589 SDVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVG-GCRDSA 413
            +     +++AW    A +RNG +PD   +  ++ +LC+ GKLE+ V LL +   C    
Sbjct: 192 ENE----IKLAWCVCGALIRNGVLPD---YVRIALILCKNGKLERVVRLLDMSIVCNALI 244

Query: 412 YDLVIDCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREML 233
           Y LVIDC+C +G F  A   ++ M      P F  Y +ILD   ++ +D+++ +++  M+
Sbjct: 245 YKLVIDCYCERGNFSAAFHYLNEMCNRKFDPGFCAYNSILDGACKYENDEVIQIVMGSMV 304

Query: 232 VYGFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGI 53
             G LP +   +YD II ++C L K + A+ FF RAR   +EL    Y  +L+ ++K+G 
Sbjct: 305 EKGLLPKLLLSEYDSIIQKICNLGKTHAAQMFFKRARNEKIELDNATYGCMLRALAKDGR 364

Query: 52  VWDALELYGILLEKGI 5
           V +A+ +Y ++LE G+
Sbjct: 365 VKEAIGVYLVILESGV 380


>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  163 bits (413), Expect = 5e-38
 Identities = 89/255 (34%), Positives = 142/255 (55%)
 Frame = -2

Query: 769 SLSRASQRKDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSS 590
           ++ +A + K S    LNFVLE YS  G     LE+++K+    C  +  +CN LLDAL  
Sbjct: 153 TMVQACRGKSSLLCTLNFVLEFYSHKGSFLEGLEVYKKMRVIGCTPSVHACNVLLDALQR 212

Query: 589 SDVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAY 410
                  +R+AW  Y A +R G +PD  TWSL++ +LC++G  E+ V LL +G C    Y
Sbjct: 213 ESE----IRLAWCFYCAMIRVGVLPDKFTWSLVAHILCKDGNFERIVKLLDMGICNSVMY 268

Query: 409 DLVIDCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLV 230
           + V+D + + G+F  A   ++ M +  + P F+TY +ILD   +  + +++  ++  M+ 
Sbjct: 269 NAVVDYYSKNGDFKAAFCRLNEMYDRKVEPGFSTYSSILDGACKCRNLQVIERVVAIMVG 328

Query: 229 YGFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIV 50
              L   P  DYD II +LC+L K+  A  FF RA    + L    Y  +L+  S EGI+
Sbjct: 329 KQLLSKCPSSDYDSIIQKLCDLGKVSAATLFFKRACDERIGLQDATYGRMLRAFSIEGIL 388

Query: 49  WDALELYGILLEKGI 5
            +A+ LY ++LE+G+
Sbjct: 389 EEAIGLYQVILERGL 403


>ref|XP_002305605.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222848569|gb|EEE86116.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 564

 Score =  160 bits (406), Expect = 3e-37
 Identities = 89/248 (35%), Positives = 142/248 (57%)
 Frame = -2

Query: 745 KDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGV 566
           K  +S A +FVLE YS  GL   SLE+FRK+       +  +CN++LD L   +     +
Sbjct: 132 KSLKSDAFSFVLECYSHKGLFMESLEMFRKMRGNGFIASGTACNSVLDVLQRENE----I 187

Query: 565 RIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAYDLVIDCFC 386
           ++AW  Y A +++G +PD  TWSL++++LC++G  E+ V  L +G      Y+ VIDC  
Sbjct: 188 KLAWCFYCAMIKDGVLPDKLTWSLIAQILCKDGNFERIVKFLDMGVYNSVLYNGVIDCCS 247

Query: 385 RKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLPTVP 206
           ++G+F  A   +++M E  + P F+TY AILD   + G+++++  ++  M   G LP  P
Sbjct: 248 KRGDFEAAFERLNQMCERKLDPGFSTYSAILDGACKHGNEEVIERVMDIMAEKGLLPKCP 307

Query: 205 CLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIVWDALELYG 26
               D +I +  +L K+ VA  FF RA    + L    Y  +LK +SKE  V +A+ LY 
Sbjct: 308 LSQCDSVIQKFSDLCKMNVATMFFRRACDEKIGLQDATYGCMLKALSKEARVKEAIGLYS 367

Query: 25  ILLEKGIK 2
           ++ EKGI+
Sbjct: 368 LISEKGIR 375


>gb|EMJ13917.1| hypothetical protein PRUPE_ppa018797mg [Prunus persica]
          Length = 584

 Score =  158 bits (399), Expect = 2e-36
 Identities = 84/254 (33%), Positives = 143/254 (56%)
 Frame = -2

Query: 766 LSRASQRKDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSS 587
           ++ A +  DS+S  L+FVL  YS  GL    LE+FRK+    C  +  +CNALL+A+   
Sbjct: 130 ITLACKGTDSQSTTLSFVLGCYSRKGLFREGLEVFRKMNVLGCVPSVVACNALLNAIQRE 189

Query: 586 DVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAYD 407
           +     +R+AW  Y   +RNG +PD  TWSL++++LC++GK E+ + LL +       Y+
Sbjct: 190 NE----IRLAWCFYGLMIRNGVLPDRFTWSLVAQILCKDGKFERILRLLDLNIYNSMMYN 245

Query: 406 LVIDCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVY 227
           L++D   + G F  A   ++ M +  + P F+TY +ILD   + G+ +++  +   M+  
Sbjct: 246 LLVDGCSKSGNFDAAFSHLNEMCDRKVDPDFSTYSSILDGACKLGNVEVVERVTSVMVEK 305

Query: 226 GFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIVW 47
             LP  P  +YD I+ +LC+L K + A+ FF +A    + L    Y  +LK ++ E    
Sbjct: 306 KLLPNCPLSEYDSIVEKLCDLGKTHAAEMFFKKACDEKIGLQDGTYGLMLKALTNEVRTK 365

Query: 46  DALELYGILLEKGI 5
           +A+ +Y ++ E+GI
Sbjct: 366 EAISVYRLISERGI 379


>ref|XP_006449088.1| hypothetical protein CICLE_v10018367mg [Citrus clementina]
           gi|557551699|gb|ESR62328.1| hypothetical protein
           CICLE_v10018367mg [Citrus clementina]
          Length = 578

 Score =  155 bits (392), Expect = 1e-35
 Identities = 95/260 (36%), Positives = 148/260 (56%), Gaps = 5/260 (1%)
 Frame = -2

Query: 769 SLSRASQRKDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSS 590
           S+ ++ + +DS+S AL+ VL+ YS  GL    LE++R +  +       +CNALLDAL  
Sbjct: 138 SMIQSCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYR 197

Query: 589 SDVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAY 410
            +     +R+A   Y A +R+G  P+  TWSL++++LCR GK E  + LL  G      Y
Sbjct: 198 QNE----IRLASCLYGAMIRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMY 253

Query: 409 DLVIDCFCRKGEFGVAIGLVHRM-REVNMRPRFTTYCAILDSGSRFG----DDKIMGLML 245
           +LVID + +KG+FG A   ++ M    N+ P F+TY +ILD G R+      D+I+GLM+
Sbjct: 254 NLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGGCRYEKTEVSDRIVGLMV 313

Query: 244 REMLVYGFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMS 65
            + L    LP       D +I +L ++ K Y A+  F RA    +EL    Y  +LK +S
Sbjct: 314 EKKL----LPKNFLSGNDSVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTYGCMLKALS 369

Query: 64  KEGIVWDALELYGILLEKGI 5
           KEG V + +++Y ++ E+GI
Sbjct: 370 KEGRVKEVIQIYHLISERGI 389


>gb|EOY28616.1| Tetratricopeptide repeat-like superfamily protein, putative
           [Theobroma cacao]
          Length = 578

 Score =  155 bits (391), Expect = 2e-35
 Identities = 90/255 (35%), Positives = 143/255 (56%)
 Frame = -2

Query: 769 SLSRASQRKDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSS 590
           S+ +A + K+ +S AL+ V++ YS  GL    LE+FRK+       +  +CN LLDAL  
Sbjct: 139 SMIQACKGKNFQSSALSSVIKCYSKHGLFMEGLEVFRKMRIHGFTPSVCACNELLDALQR 198

Query: 589 SDVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAY 410
               G+ V++AW    A LR G  PD  +WSL++++LC+ GKL K V LL  G      Y
Sbjct: 199 ----GNEVKLAWGFLGAMLRVGIEPDQFSWSLVAQILCKNGKLGKVVGLLEKGIYNSEIY 254

Query: 409 DLVIDCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLV 230
           DLVID + + G+FG A   ++ M    +   F TY +ILD   ++ D +++G +LR M+ 
Sbjct: 255 DLVIDFYSKSGDFGAAFNRLNEMYNRKVDTSFCTYSSILDGACKYNDGEVIGRILRMMVE 314

Query: 229 YGFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIV 50
              +P       D II +LC+L K + A+  F +A   N+ L    Y  +LK +S+E  +
Sbjct: 315 KELVPRHQFSKKDLIIPKLCDLRKTHAAEMLFKKACDENIRLRNDTYGSMLKALSQEARI 374

Query: 49  WDALELYGILLEKGI 5
            +A+E+  ++L++ I
Sbjct: 375 DEAIEVCRMILKRRI 389


>ref|XP_004233795.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Solanum lycopersicum]
          Length = 584

 Score =  154 bits (388), Expect = 4e-35
 Identities = 78/244 (31%), Positives = 140/244 (57%)
 Frame = -2

Query: 736 RSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVRIA 557
           +S  L+ VLE Y   GL   +L++++ +  +   ++   CN LL+ L S +     +R+ 
Sbjct: 156 QSSVLSSVLECYCNKGLFLEALQVYQIVREYGYFVSVNCCNTLLNLLLSKN----DLRLG 211

Query: 556 WRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAYDLVIDCFCRKG 377
           W  Y + +RNG   +  TWSL++++LC++GK EK V +L  G C    Y+++IDC+  +G
Sbjct: 212 WCYYGSIIRNGVQENVVTWSLIAQMLCKDGKFEKIVAILDKGVCSPLIYNILIDCYSERG 271

Query: 376 EFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLPTVPCLD 197
           +F  A G ++ M    + P F+T+ +ILD   ++ + +++  ++  M+  G LP V   D
Sbjct: 272 KFDAAFGYLNDMYSERIDPTFSTFSSILDGACKYQNAQVIESVMSSMVEKGHLPKVVTPD 331

Query: 196 YDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIVWDALELYGILL 17
           YD +I +   + K Y A+ FF  A + +++L  + Y  +L+  SKEG   DA+ +Y I++
Sbjct: 332 YDSVIQKFSGIGKAYAAELFFREAYEKSIKLQDKTYGSMLRAFSKEGKAEDAIWMYNIIV 391

Query: 16  EKGI 5
           E+ I
Sbjct: 392 ERKI 395


>ref|XP_006348079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like isoform X1 [Solanum tuberosum]
           gi|565362693|ref|XP_006348080.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21170-like isoform X2 [Solanum tuberosum]
           gi|565362695|ref|XP_006348081.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21170-like isoform X3 [Solanum tuberosum]
          Length = 584

 Score =  149 bits (375), Expect = 1e-33
 Identities = 77/244 (31%), Positives = 137/244 (56%)
 Frame = -2

Query: 736 RSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVRIA 557
           +S  L+ VLE Y   GL   +L++++ +  +   ++   CN LL+ L S +     +R+ 
Sbjct: 156 QSSVLSSVLECYCNKGLFLEALQVYQIVREYGYFVSVNCCNTLLNLLLSKNE----LRLG 211

Query: 556 WRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAYDLVIDCFCRKG 377
           W  + + +RNG   +  TWSL++++LC++GK E+ V +L  G C    Y+++IDC+  +G
Sbjct: 212 WCYFGSIIRNGVQENVVTWSLIAQMLCKDGKFEQIVPILDKGVCSPVMYNILIDCYSERG 271

Query: 376 EFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLPTVPCLD 197
            F  A G ++ M    + P F T+ +ILD   ++ + +++  ++  M+  G LP V   D
Sbjct: 272 NFEAAFGYLNDMYSKCIDPTFNTFSSILDGACKYQNAEVIESVMSSMVEKGHLPKVVLPD 331

Query: 196 YDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIVWDALELYGILL 17
           YD +I R  ++ K Y A+ FF  A +  ++L    Y  +L+  SKEG   DA+ +Y I++
Sbjct: 332 YDSVIRRFSDMGKAYAAELFFREAYEKRIKLQDNTYGSMLRAFSKEGKAEDAIWMYNIIV 391

Query: 16  EKGI 5
           E+ I
Sbjct: 392 ERKI 395


>ref|XP_006285106.1| hypothetical protein CARUB_v10006439mg [Capsella rubella]
           gi|482553811|gb|EOA18004.1| hypothetical protein
           CARUB_v10006439mg [Capsella rubella]
          Length = 585

 Score =  132 bits (333), Expect = 1e-28
 Identities = 79/256 (30%), Positives = 133/256 (51%), Gaps = 1/256 (0%)
 Frame = -2

Query: 769 SLSRASQRKDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSS 590
           SL +  + + S S +L+ VLE Y+  G     LE+F  +   R   + R+ N+LLD+L  
Sbjct: 141 SLQKCCEGEVSLSISLSLVLECYALKGCYQNGLEVFGFMRRLRLSPSLRAYNSLLDSL-- 198

Query: 589 SDVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAY 410
             +     R+A   Y+A +RN  V D  TW L++++LC +G+ +  V L+  G      Y
Sbjct: 199 --IKEGQFRVALCLYSAMVRNQVVSDGFTWDLVAQILCEQGRSKSVVKLMETGVESCKIY 256

Query: 409 DLVIDCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLV 230
             +++C+ R GEF     ++H M    +   F++Y  +LD   R GD ++MG +L  M+ 
Sbjct: 257 TNLVECYSRNGEFDAVFNVIHEMDNKKLELSFSSYSCVLDDVCRLGDAELMGKVLGLMVE 316

Query: 229 YGFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRA-RKHNVELGKRVYLYLLKTMSKEGI 53
             FL        D II RLC++ K + ++  F +A     V L    Y  +LK +S++G 
Sbjct: 317 KKFLAVDASAVNDEIIERLCDMGKTFASEMLFRKACNGETVRLRDGTYGCMLKALSRKGR 376

Query: 52  VWDALELYGILLEKGI 5
             +A+++Y ++  KGI
Sbjct: 377 TKEAVDVYRLICRKGI 392


>ref|XP_006467990.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Citrus sinensis]
          Length = 538

 Score =  129 bits (325), Expect = 8e-28
 Identities = 81/217 (37%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
 Frame = -2

Query: 640 CQITTRSCNALLDALSSSDVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKL 461
           C+++  +CNALLDAL   +     +R+A   Y A +R+G  P+  TWSL++++LCR GK 
Sbjct: 143 CEVS--ACNALLDALYRQNE----IRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 196

Query: 460 EKAVLLLVVGGCRDSAYDLVIDCFCRKGEFGVAIGLVHRM-REVNMRPRFTTYCAILDSG 284
           E  + LL  G      Y+LVID + +KG+FG A   ++ M    N+ P F+TY +ILD  
Sbjct: 197 EVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGA 256

Query: 283 SRFG----DDKIMGLMLREMLVYGFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRARKH 116
            R+      D+I+GLM+ + L    LP       D +I +L ++ K Y A+  F RA   
Sbjct: 257 RRYEKTEVSDRIVGLMVEKKL----LPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE 312

Query: 115 NVELGKRVYLYLLKTMSKEGIVWDALELYGILLEKGI 5
            +EL    Y  +LK +SKEG V +A+++Y ++ E+GI
Sbjct: 313 KIELQDDTYGCMLKALSKEGRVKEAIQIYHLISERGI 349


>ref|XP_006413812.1| hypothetical protein EUTSA_v10024760mg [Eutrema salsugineum]
           gi|557114982|gb|ESQ55265.1| hypothetical protein
           EUTSA_v10024760mg [Eutrema salsugineum]
          Length = 584

 Score =  124 bits (311), Expect = 4e-26
 Identities = 78/255 (30%), Positives = 130/255 (50%)
 Frame = -2

Query: 769 SLSRASQRKDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSS 590
           S+ R  + + S S +L+ VLE Y+  G     LE+F  +   R   + R+ N+LLD+L  
Sbjct: 141 SMHRWFEGEVSLSTSLSLVLECYALKGSYQNGLEVFGSMRRLRLSPSLRAYNSLLDSL-- 198

Query: 589 SDVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAY 410
             V     R+A   Y+A +RN  V D  TW L++++LC +GK +  V L+  G      Y
Sbjct: 199 --VKEKQFRLALCLYSAMVRNRVVSDGLTWDLVAQVLCEQGKFKSVVKLMETGVESCKIY 256

Query: 409 DLVIDCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLV 230
             +++C+ R GEF     ++  M    +   F +Y  +LD   R GD +++  +L  M+ 
Sbjct: 257 TNLVECYSRNGEFDAVFSVIQEMDAKKLELSFCSYGYVLDDACRLGDSELIDKVLGLMVE 316

Query: 229 YGFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIV 50
             FL        D+II RLC++ K + ++  F RA      +  R Y  +LK++S  G  
Sbjct: 317 KEFLTLDDSTVNDQIIERLCDMGKTFASEMLFHRACNGGT-VRDRTYGCMLKSLSVIGRT 375

Query: 49  WDALELYGILLEKGI 5
            +A+++Y ++  KGI
Sbjct: 376 KEAVDVYRLICRKGI 390


>ref|NP_193849.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332659015|gb|AEE84415.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 551

 Score =  118 bits (295), Expect = 3e-24
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 1/246 (0%)
 Frame = -2

Query: 739 SRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVRI 560
           S S +L+ VLE Y+  G     LE+F  +   R   +  + N+LL +L    V  +  R+
Sbjct: 151 SLSVSLSLVLEYYALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSL----VKENQFRV 206

Query: 559 AWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAYDLVIDCFCRK 380
           A   Y+A +RNG V D  TW L++++LC +G+ +    L+  G      Y  +++C+ R 
Sbjct: 207 ALCLYSAMVRNGIVSDELTWDLIAQILCEQGRSKSVFKLMETGVESCKIYTNLVECYSRN 266

Query: 379 GEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLPTVPCL 200
           GEF     L+H M +  +   F +Y  +LD   R GD + +  +L  M+   F+      
Sbjct: 267 GEFDAVFSLIHEMDDKKLELSFCSYGCVLDDACRLGDAEFIDKVLCLMVEKKFVTLGDSA 326

Query: 199 DYDRIICRLCELEKIYVAKFFFDRA-RKHNVELGKRVYLYLLKTMSKEGIVWDALELYGI 23
             D+II RLC++ K + ++  F +A     V L    Y  +LK +S++    +A+++Y +
Sbjct: 327 VNDKIIERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRTKEAVDVYRM 386

Query: 22  LLEKGI 5
           +  KGI
Sbjct: 387 ICRKGI 392


>sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21170
          Length = 585

 Score =  118 bits (295), Expect = 3e-24
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 1/246 (0%)
 Frame = -2

Query: 739 SRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVRI 560
           S S +L+ VLE Y+  G     LE+F  +   R   +  + N+LL +L    V  +  R+
Sbjct: 151 SLSVSLSLVLEYYALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSL----VKENQFRV 206

Query: 559 AWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAYDLVIDCFCRK 380
           A   Y+A +RNG V D  TW L++++LC +G+ +    L+  G      Y  +++C+ R 
Sbjct: 207 ALCLYSAMVRNGIVSDELTWDLIAQILCEQGRSKSVFKLMETGVESCKIYTNLVECYSRN 266

Query: 379 GEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLPTVPCL 200
           GEF     L+H M +  +   F +Y  +LD   R GD + +  +L  M+   F+      
Sbjct: 267 GEFDAVFSLIHEMDDKKLELSFCSYGCVLDDACRLGDAEFIDKVLCLMVEKKFVTLGDSA 326

Query: 199 DYDRIICRLCELEKIYVAKFFFDRA-RKHNVELGKRVYLYLLKTMSKEGIVWDALELYGI 23
             D+II RLC++ K + ++  F +A     V L    Y  +LK +S++    +A+++Y +
Sbjct: 327 VNDKIIERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRTKEAVDVYRM 386

Query: 22  LLEKGI 5
           +  KGI
Sbjct: 387 ICRKGI 392


>ref|XP_002867861.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297313697|gb|EFH44120.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score = 93.6 bits (231), Expect = 7e-17
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 1/256 (0%)
 Frame = -2

Query: 769 SLSRASQRKDSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSS 590
           S+ R  +   S S +L+ V+E Y+  G     LE+F  +   R   +  + N+LL +L  
Sbjct: 141 SMHRWFEGDVSLSISLSLVIECYALKGCYQNGLEVFGFMRRLRLSPSQSAYNSLLGSL-- 198

Query: 589 SDVDGDGVRIAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAY 410
             V  +  R+A   Y+A +                 LC  G+ +  V L+  G      Y
Sbjct: 199 --VKENQFRVALCLYSAMI-----------------LCEHGRSKSVVKLMETGVESCKIY 239

Query: 409 DLVIDCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLV 230
             +++C+ R GEF     L+H M    +   F++Y  +LD+  R GD +++  +L  M+ 
Sbjct: 240 TNLVECYSRNGEFDATFSLIHEMDGKKLELSFSSYGCVLDNACRLGDAELIDKVLGSMVE 299

Query: 229 YGFLPTVPCLDYDRIICRLCELEKIYVAKFFFDRA-RKHNVELGKRVYLYLLKTMSKEGI 53
             FL        D++I RLC++ K + ++  F +A     V L +  Y  +LK +S++  
Sbjct: 300 KKFLTLGDSALNDQMIERLCDMGKTFASEMLFRKACNGETVRLRESTYGCMLKALSRKER 359

Query: 52  VWDALELYGILLEKGI 5
             +A+++Y ++  KGI
Sbjct: 360 TKEAVDVYRMICRKGI 375


>emb|CAA17536.1| putative protein [Arabidopsis thaliana] gi|7268914|emb|CAB79117.1|
           putative protein [Arabidopsis thaliana]
          Length = 534

 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 1/246 (0%)
 Frame = -2

Query: 739 SRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVRI 560
           S S +L+ VLE Y+  G     LE+F  +   R   +  + N+LL +L    V  +  R+
Sbjct: 151 SLSVSLSLVLEYYALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSL----VKENQFRV 206

Query: 559 AWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDSAYDLVIDCFCRK 380
           A   Y+A +                 LC +G+ +    L+  G      Y  +++C+ R 
Sbjct: 207 ALCLYSAMI-----------------LCEQGRSKSVFKLMETGVESCKIYTNLVECYSRN 249

Query: 379 GEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLPTVPCL 200
           GEF     L+H M +  +   F +Y  +LD   R GD + +  +L  M+   F+      
Sbjct: 250 GEFDAVFSLIHEMDDKKLELSFCSYGCVLDDACRLGDAEFIDKVLCLMVEKKFVTLGDSA 309

Query: 199 DYDRIICRLCELEKIYVAKFFFDRA-RKHNVELGKRVYLYLLKTMSKEGIVWDALELYGI 23
             D+II RLC++ K + ++  F +A     V L    Y  +LK +S++    +A+++Y +
Sbjct: 310 VNDKIIERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRTKEAVDVYRM 369

Query: 22  LLEKGI 5
           +  KGI
Sbjct: 370 ICRKGI 375


>emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 84.3 bits (207), Expect = 4e-14
 Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 6/253 (2%)
 Frame = -2

Query: 742 DSRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVR 563
           DS S+ L++++  Y+ S +   ++++F  +     +    +C  LL++L+ + +      
Sbjct: 149 DSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARL----TN 204

Query: 562 IAWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLLLVVGGCRDS-----AYDLVI 398
           + W+ Y   +R G VP+   +++L    C+ G +EKA  LL     R        Y+ +I
Sbjct: 205 MVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLI 264

Query: 397 DCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREML-VYGF 221
             +C+KG    A+G+  RM    + P   TY +++    R  +D    L LRE++ V G 
Sbjct: 265 SLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGL 324

Query: 220 LPTVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIVWDA 41
            P V  + Y+ I+ +LCE  KI  A    +   +  VE        L+    K G +  A
Sbjct: 325 HPGV--VTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSA 382

Query: 40  LELYGILLEKGIK 2
           +++   +LE G+K
Sbjct: 383 MKVKKKMLEAGLK 395


>ref|XP_004298606.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 746

 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 5/235 (2%)
 Frame = -2

Query: 691 GLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVRIAWRCYAAALRNGAVPD 512
           G+++ + ++F K++++   I+  SCN  L  L+SS    DG+ +A + +   L  G   +
Sbjct: 194 GILNEARKLFDKLLSYGLVISVDSCNFFLSRLASSS---DGIEMAIKFFNEYLEVGVHWN 250

Query: 511 SRTWSLLSRLLCREGKLEKA---VLLLVVGGCRDS--AYDLVIDCFCRKGEFGVAIGLVH 347
           + +++++   LCR  K+++A   +LL+ + GC     +Y  +I  +C  GE    + L+ 
Sbjct: 251 TSSYNIIIHSLCRLEKIKEAHQLLLLMELKGCLPDVVSYSTLISRYCHVGELQHVLKLIE 310

Query: 346 RMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLPTVPCLDYDRIICRLCE 167
            M    ++    TY +I+    + G      ++LREMLV G LP    + Y  +I   C+
Sbjct: 311 EMNSKGLKTNSYTYNSIILLLCKTGKLSEAEMILREMLVLGVLPDY--VIYTTLIDGFCK 368

Query: 166 LEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIVWDALELYGILLEKGIK 2
              +  A   FD  R   V      Y  ++    + G + DA +L+  ++ KG++
Sbjct: 369 SGNVPAAWRLFDEMRVRKVIPDFITYTAIIHGFCQTGKMMDADKLFHEMVSKGLE 423


>ref|XP_006346446.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like isoform X1 [Solanum tuberosum]
           gi|565359285|ref|XP_006346447.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g39710-like isoform X2 [Solanum tuberosum]
          Length = 767

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 61/250 (24%), Positives = 118/250 (47%), Gaps = 5/250 (2%)
 Frame = -2

Query: 739 SRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVRI 560
           S S   + ++++YS   +I  ++ IF         +T  S N++LDAL     +G    +
Sbjct: 142 SSSAVFDLMVKSYSHLKMIDRAMNIFELAKFNGFMLTVLSYNSILDALIRVSCNGS-FEL 200

Query: 559 AWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLL---LVVGGCRDSA--YDLVID 395
           A + Y   +++G  P+  T++++ R LC +G L+K +++   +   GC  +   Y+ +I 
Sbjct: 201 AQKFYDDMVQSGVSPNVYTYNIMIRGLCAKGDLQKGLVVFNEMEKTGCLRNVVTYNTIIG 260

Query: 394 CFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLP 215
            +C+ G+   A+ L+  M+  N+ P   TY AI++   R G  K    +L EM   G +P
Sbjct: 261 GYCKIGKVDEAVELLKLMQVRNLEPTVVTYNAIINGLCREGRMKETSEILEEMRGNGLMP 320

Query: 214 TVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIVWDALE 35
               + Y+ ++   C     + A        ++ +      Y  L+ +M K G +  A+E
Sbjct: 321 DE--VTYNTLVNGYCREGNFHQALVLHSEMLRNGLSPDVVTYTSLINSMCKTGSLHRAME 378

Query: 34  LYGILLEKGI 5
            +  L  +G+
Sbjct: 379 FFDQLHARGL 388


>ref|XP_004231403.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Solanum lycopersicum]
          Length = 824

 Score = 78.2 bits (191), Expect = 3e-12
 Identities = 60/250 (24%), Positives = 120/250 (48%), Gaps = 5/250 (2%)
 Frame = -2

Query: 739 SRSRALNFVLETYSTSGLISGSLEIFRKIVAFRCQITTRSCNALLDALSSSDVDGDGVRI 560
           S S   + ++++YS   +I  ++ IF         +T  S N++LDAL     +G    +
Sbjct: 199 SSSAVFDLMVKSYSHLKMIDRAMNIFELAKFNGFMLTVLSYNSILDALIRVSYNGS-FEL 257

Query: 559 AWRCYAAALRNGAVPDSRTWSLLSRLLCREGKLEKAVLL---LVVGGCRDSA--YDLVID 395
           A + Y   +++G  P+  T++++ R LC +G+L+K++++   +   GC  +   Y+ +I 
Sbjct: 258 AQKFYDDMVQSGVSPNVYTYNIMIRGLCAKGELQKSLVVFNEMEKNGCLRNVVTYNTIIG 317

Query: 394 CFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREMLVYGFLP 215
            +C+ G+   A+ L+  M+  ++ P   TY AI++   R G  K    +L EM   G +P
Sbjct: 318 GYCKIGKVDEAVKLLKLMQVRSLEPSVVTYNAIINGLCREGRMKETSEILEEMRGKGLMP 377

Query: 214 TVPCLDYDRIICRLCELEKIYVAKFFFDRARKHNVELGKRVYLYLLKTMSKEGIVWDALE 35
               + Y+ ++   C     + A        ++ +      Y  L+ +M K G +  A+E
Sbjct: 378 DE--VTYNTLVNGYCREGNFHQALVLHSEMLRNGLSPDVVTYTSLINSMCKTGNLHRAME 435

Query: 34  LYGILLEKGI 5
            +  L  +G+
Sbjct: 436 FFDQLHARGL 445


>ref|XP_006826483.1| hypothetical protein AMTR_s00004p00243870 [Amborella trichopoda]
           gi|548830797|gb|ERM93720.1| hypothetical protein
           AMTR_s00004p00243870 [Amborella trichopoda]
          Length = 359

 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 22/158 (13%)
 Frame = -2

Query: 412 YDLVIDCFCRKGEFGVAIGLVHRMREVNMRPRFTTYCAILDSGSRFGDDKIMGLMLREML 233
           Y+L++D +CR G+F +A  ++ R+    + P F +Y +ILD   RFG+      +LR ML
Sbjct: 13  YNLILDGYCRNGDFVIAFEVIERIYGKGLEPDFASYGSILDGSCRFGNMGTAVRVLRIML 72

Query: 232 VYGFLPTV----------------------PCLDYDRIICRLCELEKIYVAKFFFDRARK 119
               +PTV                        L YD  I +LC+L   + A+  F  AR 
Sbjct: 73  EKRLVPTVGGEFSPNDCFTLNDNNCIVAAISYLHYDAFIRKLCKLGMTHAAELVFGIARS 132

Query: 118 HNVELGKRVYLYLLKTMSKEGIVWDALELYGILLEKGI 5
             V L    Y+ LLK  S++  + +A+ +Y +LL++ I
Sbjct: 133 ALVPLQNACYIALLKAFSRDRRIKEAVRMYFLLLQRDI 170