BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00027150
         (1366 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004975516.1| PREDICTED: DNA repair helicase XPB1-like [Se...   611   e-172
gb|EEE55219.1| hypothetical protein OsJ_03086 [Oryza sativa Japo...   610   e-172
gb|EEC71313.1| hypothetical protein OsI_03346 [Oryza sativa Indi...   610   e-172
ref|NP_001043936.1| Os01g0691600 [Oryza sativa Japonica Group] g...   610   e-172
ref|XP_003569596.1| PREDICTED: DNA repair helicase XPB2-like [Br...   605   e-170
tpg|DAA58033.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea m...   603   e-170
tpg|DAA58032.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea m...   603   e-170
ref|XP_006663357.1| PREDICTED: DNA repair helicase XPB1-like [Or...   602   e-170
gb|EOY24802.1| Xeroderma pigmentosum complementation group B 1 i...   597   e-168
ref|XP_002456182.1| hypothetical protein SORBIDRAFT_03g031750 [S...   597   e-168
ref|XP_002273444.1| PREDICTED: DNA repair helicase XPB1-like [Vi...   593   e-167
ref|XP_006368763.1| hypothetical protein POPTR_0001s09670g [Popu...   592   e-166
dbj|BAJ96793.1| predicted protein [Hordeum vulgare subsp. vulgare]    591   e-166
gb|EOY24804.1| Xeroderma pigmentosum complementation group B 2 i...   590   e-166
gb|EOY24803.1| Xeroderma pigmentosum complementation group B 2 i...   590   e-166
ref|XP_002509835.1| rad25/xp-B DNA repair helicase, putative [Ri...   588   e-165
ref|NP_568592.1| DNA repair helicase XPB1 [Arabidopsis thaliana]...   585   e-164
ref|XP_006343950.1| PREDICTED: DNA repair helicase XPB1-like [So...   585   e-164
gb|AAT36215.1| DNA repair and transcription factor XPB1 [Arabido...   585   e-164
ref|XP_002870639.1| predicted protein [Arabidopsis lyrata subsp....   585   e-164

>ref|XP_004975516.1| PREDICTED: DNA repair helicase XPB1-like [Setaria italica]
          Length = 765

 Score =  611 bits (1576), Expect = e-172
 Identities = 316/427 (74%), Positives = 341/427 (79%), Gaps = 17/427 (3%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXX--GVKSEREIKKRDFTQLELK 309
            M GGDG+R R  K+ K++   +                    + +  E+KKRDFT+LELK
Sbjct: 1    MAGGDGDRHRAPKRHKSSAPSKAALVDESAEFDYADDFDDDALDANTEVKKRDFTKLELK 60

Query: 310  PDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 489
            PDH NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
Sbjct: 61   PDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 120

Query: 490  VGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRL 669
            VGLET TI+SVL+KLSKTKLP EIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVL  L
Sbjct: 121  VGLETSTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLSNL 180

Query: 670  RKDNVISKAQINFEDSHGV--------------HEDLLNRAELATTIE-KETHSFEIDPS 804
              D+VISKA+I+ EDS G               HE+LLN  +LA   E KETHSFEIDPS
Sbjct: 181  LNDDVISKARISPEDSLGASSFTISKTSGQASGHEELLNGMDLAAATEDKETHSFEIDPS 240

Query: 805  QVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGRA 984
            QVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL++ LKPQ   RPYQ+ SLSKMF NGRA
Sbjct: 241  QVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGRA 300

Query: 985  RSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCFT 1164
            RSGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI+DD+IS FT
Sbjct: 301  RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDDHISRFT 360

Query: 1165 SDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFR 1344
            SDNKEKFRG+AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMFR
Sbjct: 361  SDNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFR 420

Query: 1345 KVISITK 1365
            KVISITK
Sbjct: 421  KVISITK 427


>gb|EEE55219.1| hypothetical protein OsJ_03086 [Oryza sativa Japonica Group]
          Length = 766

 Score =  610 bits (1574), Expect = e-172
 Identities = 313/426 (73%), Positives = 340/426 (79%), Gaps = 16/426 (3%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQLELKPD 315
            M GGDG+R R  K+ K++                        ++RE+KKRDFT+LELKPD
Sbjct: 1    MAGGDGDRARAPKRHKSSAPSRSIDETAELDYTDDVDDDVRDADREVKKRDFTKLELKPD 60

Query: 316  HVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 495
            H NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61   HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 496  LETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRLRK 675
            LET TI+SV++KLSKTKLP EIIDFIH STANYGKVKLVLKKNRYFVESPFPEVLK L K
Sbjct: 121  LETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLK 180

Query: 676  DNVISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFEIDPSQ 807
            D++I +A+I+ EDS G                HEDLL+  ELA   E KETHSFEIDPSQ
Sbjct: 181  DDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKETHSFEIDPSQ 240

Query: 808  VENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGRAR 987
            VENVKQRCLPNALN+PMLEEYD+RNDTVNPDL + LKPQ   RPYQ+ SLSKMF NGRAR
Sbjct: 241  VENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRAR 300

Query: 988  SGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCFTS 1167
            SGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI+D++IS FTS
Sbjct: 301  SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTS 360

Query: 1168 DNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRK 1347
            DNKEKFRG+AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMFRK
Sbjct: 361  DNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420

Query: 1348 VISITK 1365
            VISITK
Sbjct: 421  VISITK 426


>gb|EEC71313.1| hypothetical protein OsI_03346 [Oryza sativa Indica Group]
          Length = 766

 Score =  610 bits (1574), Expect = e-172
 Identities = 313/426 (73%), Positives = 340/426 (79%), Gaps = 16/426 (3%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQLELKPD 315
            M GGDG+R R  K+ K++                        ++RE+KKRDFT+LELKPD
Sbjct: 1    MAGGDGDRARAPKRHKSSAPSRSIDETAELDYTDDVDDDVRDADREVKKRDFTKLELKPD 60

Query: 316  HVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 495
            H NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61   HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 496  LETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRLRK 675
            LET TI+SV++KLSKTKLP EIIDFIH STANYGKVKLVLKKNRYFVESPFPEVLK L K
Sbjct: 121  LETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLK 180

Query: 676  DNVISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFEIDPSQ 807
            D++I +A+I+ EDS G                HEDLL+  ELA   E KETHSFEIDPSQ
Sbjct: 181  DDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKETHSFEIDPSQ 240

Query: 808  VENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGRAR 987
            VENVKQRCLPNALN+PMLEEYD+RNDTVNPDL + LKPQ   RPYQ+ SLSKMF NGRAR
Sbjct: 241  VENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRAR 300

Query: 988  SGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCFTS 1167
            SGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI+D++IS FTS
Sbjct: 301  SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTS 360

Query: 1168 DNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRK 1347
            DNKEKFRG+AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMFRK
Sbjct: 361  DNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420

Query: 1348 VISITK 1365
            VISITK
Sbjct: 421  VISITK 426


>ref|NP_001043936.1| Os01g0691600 [Oryza sativa Japonica Group]
            gi|113533467|dbj|BAF05850.1| Os01g0691600 [Oryza sativa
            Japonica Group]
          Length = 580

 Score =  610 bits (1574), Expect = e-172
 Identities = 313/426 (73%), Positives = 340/426 (79%), Gaps = 16/426 (3%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQLELKPD 315
            M GGDG+R R  K+ K++                        ++RE+KKRDFT+LELKPD
Sbjct: 1    MAGGDGDRARAPKRHKSSAPSRSIDETAELDYTDDVDDDVRDADREVKKRDFTKLELKPD 60

Query: 316  HVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 495
            H NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61   HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 496  LETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRLRK 675
            LET TI+SV++KLSKTKLP EIIDFIH STANYGKVKLVLKKNRYFVESPFPEVLK L K
Sbjct: 121  LETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLK 180

Query: 676  DNVISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFEIDPSQ 807
            D++I +A+I+ EDS G                HEDLL+  ELA   E KETHSFEIDPSQ
Sbjct: 181  DDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKETHSFEIDPSQ 240

Query: 808  VENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGRAR 987
            VENVKQRCLPNALN+PMLEEYD+RNDTVNPDL + LKPQ   RPYQ+ SLSKMF NGRAR
Sbjct: 241  VENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRAR 300

Query: 988  SGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCFTS 1167
            SGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI+D++IS FTS
Sbjct: 301  SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTS 360

Query: 1168 DNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRK 1347
            DNKEKFRG+AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMFRK
Sbjct: 361  DNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420

Query: 1348 VISITK 1365
            VISITK
Sbjct: 421  VISITK 426


>ref|XP_003569596.1| PREDICTED: DNA repair helicase XPB2-like [Brachypodium distachyon]
          Length = 766

 Score =  605 bits (1561), Expect = e-170
 Identities = 316/431 (73%), Positives = 343/431 (79%), Gaps = 21/431 (4%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATR-----VMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQL 300
            M GGDG+R R  K+ K++      +++E                G   + E+KKRDFT+L
Sbjct: 1    MAGGDGDRSRAPKRQKSSAPSKAALVDETAEMNYADDFDDDARDG---DIEVKKRDFTKL 57

Query: 301  ELKPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA 480
            ELKPDHVNRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA
Sbjct: 58   ELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA 117

Query: 481  AVSVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVL 660
            AVSVGLET TI+SVL+KLSKTKLP EIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVL
Sbjct: 118  AVSVGLETTTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVL 177

Query: 661  KRLRKDNVISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFE 792
            K L  D VI++A+ + EDS G                HEDLL+  ELA   E KETHSFE
Sbjct: 178  KTLLNDEVIARARQSPEDSLGGPSFTVSKTAGEIASGHEDLLDGMELAAATEDKETHSFE 237

Query: 793  IDPSQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFR 972
            IDPSQVENVKQRCLPNALN+PMLEEYD+RNDTVNPDL++ LKPQ   RPYQ+ SLSKMF 
Sbjct: 238  IDPSQVENVKQRCLPNALNFPMLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFG 297

Query: 973  NGRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNI 1152
            NGRARSGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI D++I
Sbjct: 298  NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHI 357

Query: 1153 SCFTSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPA 1332
            S FTSDNKEKFRG+AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPA
Sbjct: 358  SRFTSDNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPA 417

Query: 1333 HMFRKVISITK 1365
            HMFRKVISITK
Sbjct: 418  HMFRKVISITK 428


>tpg|DAA58033.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea mays]
          Length = 767

 Score =  603 bits (1556), Expect = e-170
 Identities = 313/428 (73%), Positives = 339/428 (79%), Gaps = 18/428 (4%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXX--GVKSEREIKKRDFTQLELK 309
            M GGDG+R R  K+ K++   +                      ++ E+KKRDFT+LELK
Sbjct: 1    MAGGDGDRHRAPKRHKSSTPSKAALVDESAEFDYADDFDDDAHDADTEVKKRDFTKLELK 60

Query: 310  PDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 489
             DH +RPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
Sbjct: 61   VDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 120

Query: 490  VGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRL 669
            VGLET TI+SVL+KLSKTKLP EIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVL  L
Sbjct: 121  VGLETSTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLSTL 180

Query: 670  RKDNVISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFEIDP 801
             +D VIS+A+I+ EDS G                HEDLLN  E+A   E KETHSFEIDP
Sbjct: 181  LRDEVISRARISPEDSLGAPSFTVSKTSGQIASGHEDLLNGMEIAAATEDKETHSFEIDP 240

Query: 802  SQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGR 981
            SQVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL++ LKPQ   RPYQ+ SLSKMF NGR
Sbjct: 241  SQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGR 300

Query: 982  ARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCF 1161
            ARSGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI+D+NIS F
Sbjct: 301  ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDENISRF 360

Query: 1162 TSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMF 1341
            TSDNKEKF G+AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMF
Sbjct: 361  TSDNKEKFTGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMF 420

Query: 1342 RKVISITK 1365
            RKVISITK
Sbjct: 421  RKVISITK 428


>tpg|DAA58032.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea mays]
          Length = 702

 Score =  603 bits (1556), Expect = e-170
 Identities = 313/428 (73%), Positives = 339/428 (79%), Gaps = 18/428 (4%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXX--GVKSEREIKKRDFTQLELK 309
            M GGDG+R R  K+ K++   +                      ++ E+KKRDFT+LELK
Sbjct: 1    MAGGDGDRHRAPKRHKSSTPSKAALVDESAEFDYADDFDDDAHDADTEVKKRDFTKLELK 60

Query: 310  PDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 489
             DH +RPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
Sbjct: 61   VDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 120

Query: 490  VGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRL 669
            VGLET TI+SVL+KLSKTKLP EIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVL  L
Sbjct: 121  VGLETSTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLSTL 180

Query: 670  RKDNVISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFEIDP 801
             +D VIS+A+I+ EDS G                HEDLLN  E+A   E KETHSFEIDP
Sbjct: 181  LRDEVISRARISPEDSLGAPSFTVSKTSGQIASGHEDLLNGMEIAAATEDKETHSFEIDP 240

Query: 802  SQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGR 981
            SQVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL++ LKPQ   RPYQ+ SLSKMF NGR
Sbjct: 241  SQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGR 300

Query: 982  ARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCF 1161
            ARSGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI+D+NIS F
Sbjct: 301  ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDENISRF 360

Query: 1162 TSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMF 1341
            TSDNKEKF G+AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMF
Sbjct: 361  TSDNKEKFTGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMF 420

Query: 1342 RKVISITK 1365
            RKVISITK
Sbjct: 421  RKVISITK 428


>ref|XP_006663357.1| PREDICTED: DNA repair helicase XPB1-like [Oryza brachyantha]
          Length = 918

 Score =  602 bits (1553), Expect = e-170
 Identities = 304/384 (79%), Positives = 327/384 (85%), Gaps = 16/384 (4%)
 Frame = +1

Query: 262  SEREIKKRDFTQLELKPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPES 441
            ++RE+KKRDFT+LELKPDH NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPES
Sbjct: 196  ADREVKKRDFTKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 255

Query: 442  MHEYNLTPHSLYAAVSVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKK 621
            MHEYNLTPHSLYAAVSVGLET TI+SV++KLSKTKLP EIIDFIH STANYGKVKLVLKK
Sbjct: 256  MHEYNLTPHSLYAAVSVGLETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKK 315

Query: 622  NRYFVESPFPEVLKRLRKDNVISKAQINFEDSHGV---------------HEDLLNRAEL 756
            NRYFVESPFPEVLK L +D++IS+A I+ EDS G                HEDLL+  EL
Sbjct: 316  NRYFVESPFPEVLKTLLRDDIISRAWISPEDSVGAPSFTVSKTAGEMASGHEDLLDGMEL 375

Query: 757  ATTIE-KETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHE 933
            A   E KETHSFEIDPSQVENVKQRCLPNALN+PMLEEYD+RNDTVNPDL + LKPQ   
Sbjct: 376  AAATEDKETHSFEIDPSQVENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARP 435

Query: 934  RPYQQTSLSKMFRNGRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAF 1113
            RPYQ+ SLSKMF NGRARSGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAF
Sbjct: 436  RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 495

Query: 1114 QFKLWSTIEDDNISCFTSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXW 1293
            QFKLWSTI+D++IS FTSDNKEKFRG+AGVVVTTYNM+AFGG                 W
Sbjct: 496  QFKLWSTIKDEHISRFTSDNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREW 555

Query: 1294 GLLLMDEVHVVPAHMFRKVISITK 1365
            GLLLMDEVHVVPAHMFRKVISITK
Sbjct: 556  GLLLMDEVHVVPAHMFRKVISITK 579


>gb|EOY24802.1| Xeroderma pigmentosum complementation group B 1 isoform 1 [Theobroma
            cacao]
          Length = 771

 Score =  597 bits (1540), Expect = e-168
 Identities = 310/430 (72%), Positives = 338/430 (78%), Gaps = 23/430 (5%)
 Frame = +1

Query: 145  GDGERGRPMKKLK-------ATRVMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQLE 303
            G GE+GRP KKLK        +  +E+E                   E E KKRDF++LE
Sbjct: 2    GHGEKGRPTKKLKFAAKDDHRSSTVEDEYSFYPDEGDDASRD----GENEGKKRDFSKLE 57

Query: 304  LKPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 483
            LKPDH NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA
Sbjct: 58   LKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 117

Query: 484  VSVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLK 663
            VSVGLETETI+SVLNKLSKTKLP E+IDFIH STANYGKVKLVLKKNRYF+ESPFPEVLK
Sbjct: 118  VSVGLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLK 177

Query: 664  RLRKDNVISKAQINFEDSHGV---------------HEDLLNRAELAT-TIEKETHSFEI 795
            +L +D+VI++A+I  E +HG                H+ LLN AELA  T EKETH+FEI
Sbjct: 178  KLLQDDVIARARIASESAHGSDGFTISKAAGEIGTGHDGLLNEAELAAATEEKETHAFEI 237

Query: 796  DPSQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRN 975
            DP+QVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL++ LKP    RPYQ+ SLSKMF N
Sbjct: 238  DPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGN 297

Query: 976  GRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNIS 1155
            GRARSGIIVLPCGAGKSLVGVSAA R+KKSCLCLATNAVSVDQWAFQFKLWSTI DD I 
Sbjct: 298  GRARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQIC 357

Query: 1156 CFTSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAH 1335
             FTSD+KE+FRG AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAH
Sbjct: 358  RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 417

Query: 1336 MFRKVISITK 1365
            MFRKVIS+TK
Sbjct: 418  MFRKVISLTK 427


>ref|XP_002456182.1| hypothetical protein SORBIDRAFT_03g031750 [Sorghum bicolor]
            gi|241928157|gb|EES01302.1| hypothetical protein
            SORBIDRAFT_03g031750 [Sorghum bicolor]
          Length = 767

 Score =  597 bits (1538), Expect = e-168
 Identities = 310/428 (72%), Positives = 336/428 (78%), Gaps = 18/428 (4%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXX--GVKSEREIKKRDFTQLELK 309
            M GGDG+R R  K+ K++   +                      ++ E+KKRDFT+LELK
Sbjct: 1    MAGGDGDRHRGPKRHKSSAPSKAALVDESAEFDYADDFDDDAHDADMEVKKRDFTKLELK 60

Query: 310  PDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 489
             DH +RPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
Sbjct: 61   VDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 120

Query: 490  VGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRL 669
            VGLET TI+SVL+KLSKTKLP EIIDFIH STANYGKVKLVLKKNRYFVESPFPEVL  L
Sbjct: 121  VGLETSTIISVLSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLSNL 180

Query: 670  RKDNVISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFEIDP 801
             +D VIS+A+I+ EDS G                HEDLLN  E+A   E KETHSFEIDP
Sbjct: 181  LRDEVISRARISPEDSLGAPSFTVSKTSGQIASGHEDLLNGMEIAAATEDKETHSFEIDP 240

Query: 802  SQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGR 981
            SQVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL + LKPQ   RPYQ+ SLSKMF NGR
Sbjct: 241  SQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGR 300

Query: 982  ARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCF 1161
            ARSGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI+D++IS F
Sbjct: 301  ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRF 360

Query: 1162 TSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMF 1341
            TSDNKEKF G+A VVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMF
Sbjct: 361  TSDNKEKFTGMASVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMF 420

Query: 1342 RKVISITK 1365
            RKVISITK
Sbjct: 421  RKVISITK 428


>ref|XP_002273444.1| PREDICTED: DNA repair helicase XPB1-like [Vitis vinifera]
          Length = 771

 Score =  593 bits (1528), Expect = e-167
 Identities = 307/430 (71%), Positives = 339/430 (78%), Gaps = 23/430 (5%)
 Frame = +1

Query: 145  GDGERGRPMKKLKATR-------VMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQLE 303
            G GE+GRP K+ K++        V+E+E                   E+E KKRDFT+LE
Sbjct: 2    GHGEKGRPSKRHKSSSKDEHKNPVVEDEDAYYGEEFEDDYRD----GEKEGKKRDFTKLE 57

Query: 304  LKPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 483
            LK DH NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA
Sbjct: 58   LKVDHSNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 117

Query: 484  VSVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLK 663
            VSVGLETETI++VL+KLSKTKLP E+IDFIH STANYGKVKLVLKKNRYFVESPFPEVLK
Sbjct: 118  VSVGLETETIIAVLSKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLK 177

Query: 664  RLRKDNVISKAQINFEDS---------------HGVHEDLLNRAELATTIE-KETHSFEI 795
             L +D VIS+++I+ E S                G H++L+N AELA   E KETHSFE+
Sbjct: 178  TLLRDEVISRSRISHEGSTGNDGFTISKTVGEIEGRHDELINEAELAAAAEEKETHSFEV 237

Query: 796  DPSQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRN 975
            DP+QVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL++ LKPQ   RPYQ+ SLSKMF N
Sbjct: 238  DPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGN 297

Query: 976  GRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNIS 1155
            GRARSGIIVLPCGAGKSLVGVSAACR++KSCLCLATNAVSVDQWAFQFKLWSTI D+ I 
Sbjct: 298  GRARSGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDEQIC 357

Query: 1156 CFTSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAH 1335
             FTSD+KE+FRG AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAH
Sbjct: 358  RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 417

Query: 1336 MFRKVISITK 1365
            MFRKVISITK
Sbjct: 418  MFRKVISITK 427


>ref|XP_006368763.1| hypothetical protein POPTR_0001s09670g [Populus trichocarpa]
            gi|550346907|gb|ERP65332.1| hypothetical protein
            POPTR_0001s09670g [Populus trichocarpa]
          Length = 786

 Score =  592 bits (1525), Expect = e-166
 Identities = 308/424 (72%), Positives = 330/424 (77%), Gaps = 17/424 (4%)
 Frame = +1

Query: 145  GDGER-GRPMKKLKATRVMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQLELKPDHV 321
            G G++ GRP KK K T   ++                G     E KKRDF++LELKPDH 
Sbjct: 2    GHGDKSGRPNKKFKFT-TKDDYRSSVAEDDAFYPEEAGDDFRDEGKKRDFSKLELKPDHA 60

Query: 322  NRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLE 501
            NRPLWACADGRI LETFS LYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLE
Sbjct: 61   NRPLWACADGRIFLETFSSLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLE 120

Query: 502  TETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRLRKDN 681
            TETI+SVLNKLSKTKLP E+IDFIHGSTANYGKVKLVLKKNRYF+ESPF EVLK+L KD 
Sbjct: 121  TETIISVLNKLSKTKLPKEMIDFIHGSTANYGKVKLVLKKNRYFIESPFTEVLKKLLKDE 180

Query: 682  VISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFEIDPSQVE 813
            VI+KA+I  E SHG                H+ LLN AELA   E KETHSFE+DPSQVE
Sbjct: 181  VIAKARIQPESSHGTEGFTISKAAGEIGTSHDGLLNEAELAAAAEEKETHSFEVDPSQVE 240

Query: 814  NVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGRARSG 993
            NVKQRCLPNALNYPMLEEYD+RNDTVNPDLN+ LKP    RPYQ+ SLSKMF NGRARSG
Sbjct: 241  NVKQRCLPNALNYPMLEEYDFRNDTVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSG 300

Query: 994  IIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCFTSDN 1173
            IIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQF LWS I  D I  FTSD+
Sbjct: 301  IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFSLWSDISQDQICRFTSDS 360

Query: 1174 KEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKVI 1353
            KE+F+G AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMFRKVI
Sbjct: 361  KERFKGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 420

Query: 1354 SITK 1365
            SITK
Sbjct: 421  SITK 424


>dbj|BAJ96793.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 762

 Score =  591 bits (1523), Expect = e-166
 Identities = 309/430 (71%), Positives = 339/430 (78%), Gaps = 20/430 (4%)
 Frame = +1

Query: 136  MTGGDGERGRPMKKLKATR-----VMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQL 300
            M GGDG+R R  K+ K++      +++E                G   + E+KKRDFT+L
Sbjct: 1    MAGGDGDRARAPKRYKSSAPSKAALVDETAEMNYADDFDDDARDG---DNEVKKRDFTKL 57

Query: 301  ELKPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA 480
            ELKPDHVNRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA
Sbjct: 58   ELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA 117

Query: 481  AVSVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVL 660
            AVSVGLET TI+SVL+KLSKTKLP EII+FIHGSTANYGKVKLVLKKN+YFVESPFPEVL
Sbjct: 118  AVSVGLETNTIISVLSKLSKTKLPHEIIEFIHGSTANYGKVKLVLKKNQYFVESPFPEVL 177

Query: 661  KRLRKDNVISKAQINFEDSHGVH--------------EDLLNRAELATTIE-KETHSFEI 795
            ++L  D+VISKA+   ED  G                 DLL+  ELA   E KETHSFE+
Sbjct: 178  EKLLNDDVISKARKAPEDCLGGSAFAVSKAAREIASGHDLLDGTELADANEDKETHSFEV 237

Query: 796  DPSQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRN 975
              SQVENVKQRCLPNALN+PMLEEYD+RNDTVNPDL++ LKPQ   RPYQ+ SLSKMF N
Sbjct: 238  YSSQVENVKQRCLPNALNFPMLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGN 297

Query: 976  GRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNIS 1155
            GRARSGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQFKLWSTI D++IS
Sbjct: 298  GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHIS 357

Query: 1156 CFTSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAH 1335
             FTSDNKEKFRG+AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAH
Sbjct: 358  RFTSDNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAH 417

Query: 1336 MFRKVISITK 1365
            MFRKVISITK
Sbjct: 418  MFRKVISITK 427


>gb|EOY24804.1| Xeroderma pigmentosum complementation group B 2 isoform 3, partial
            [Theobroma cacao]
          Length = 742

 Score =  590 bits (1521), Expect = e-166
 Identities = 298/383 (77%), Positives = 322/383 (84%), Gaps = 16/383 (4%)
 Frame = +1

Query: 265  EREIKKRDFTQLELKPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESM 444
            E E KKRDF++LELKPDH NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESM
Sbjct: 66   ENEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESM 125

Query: 445  HEYNLTPHSLYAAVSVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKN 624
            HEYNLTPHSLYAAVSVGLETETI+SVLNKLSKTKLP E+IDFIH STANYGKVKLVLKKN
Sbjct: 126  HEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKN 185

Query: 625  RYFVESPFPEVLKRLRKDNVISKAQINFEDSHGV---------------HEDLLNRAELA 759
            RYF+ESPFPEVLK+L +D+VI++A+I  E +HG                H+ LLN AELA
Sbjct: 186  RYFIESPFPEVLKKLLQDDVIARARIASESAHGSDGFTISKAAGEIGTGHDGLLNEAELA 245

Query: 760  T-TIEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHER 936
              T EKETH+FEIDP+QVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL++ LKP    R
Sbjct: 246  AATEEKETHAFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPR 305

Query: 937  PYQQTSLSKMFRNGRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQ 1116
            PYQ+ SLSKMF NGRARSGIIVLPCGAGKSLVGVSAA R+KKSCLCLATNAVSVDQWAFQ
Sbjct: 306  PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQ 365

Query: 1117 FKLWSTIEDDNISCFTSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWG 1296
            FKLWSTI DD I  FTSD+KE+FRG AGVVVTTYNM+AFGG                 WG
Sbjct: 366  FKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWG 425

Query: 1297 LLLMDEVHVVPAHMFRKVISITK 1365
            LLLMDEVHVVPAHMFRKVIS+TK
Sbjct: 426  LLLMDEVHVVPAHMFRKVISLTK 448


>gb|EOY24803.1| Xeroderma pigmentosum complementation group B 2 isoform 2, partial
            [Theobroma cacao]
          Length = 809

 Score =  590 bits (1521), Expect = e-166
 Identities = 298/383 (77%), Positives = 322/383 (84%), Gaps = 16/383 (4%)
 Frame = +1

Query: 265  EREIKKRDFTQLELKPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESM 444
            E E KKRDF++LELKPDH NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESM
Sbjct: 66   ENEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESM 125

Query: 445  HEYNLTPHSLYAAVSVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKN 624
            HEYNLTPHSLYAAVSVGLETETI+SVLNKLSKTKLP E+IDFIH STANYGKVKLVLKKN
Sbjct: 126  HEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKN 185

Query: 625  RYFVESPFPEVLKRLRKDNVISKAQINFEDSHGV---------------HEDLLNRAELA 759
            RYF+ESPFPEVLK+L +D+VI++A+I  E +HG                H+ LLN AELA
Sbjct: 186  RYFIESPFPEVLKKLLQDDVIARARIASESAHGSDGFTISKAAGEIGTGHDGLLNEAELA 245

Query: 760  T-TIEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHER 936
              T EKETH+FEIDP+QVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL++ LKP    R
Sbjct: 246  AATEEKETHAFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPR 305

Query: 937  PYQQTSLSKMFRNGRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQ 1116
            PYQ+ SLSKMF NGRARSGIIVLPCGAGKSLVGVSAA R+KKSCLCLATNAVSVDQWAFQ
Sbjct: 306  PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQ 365

Query: 1117 FKLWSTIEDDNISCFTSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWG 1296
            FKLWSTI DD I  FTSD+KE+FRG AGVVVTTYNM+AFGG                 WG
Sbjct: 366  FKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWG 425

Query: 1297 LLLMDEVHVVPAHMFRKVISITK 1365
            LLLMDEVHVVPAHMFRKVIS+TK
Sbjct: 426  LLLMDEVHVVPAHMFRKVISLTK 448


>ref|XP_002509835.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
            gi|223549734|gb|EEF51222.1| rad25/xp-B DNA repair
            helicase, putative [Ricinus communis]
          Length = 768

 Score =  588 bits (1516), Expect = e-165
 Identities = 306/428 (71%), Positives = 335/428 (78%), Gaps = 21/428 (4%)
 Frame = +1

Query: 145  GDGERGRPMKKLKATR------VMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQLEL 306
            G GE+GRP KK K++       +ME+E               G     E KK+DF++LEL
Sbjct: 2    GHGEKGRPSKKQKSSNDDHRSTIMEDEDVYCGEDMEDDRPDDG-----EGKKKDFSKLEL 56

Query: 307  KPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAV 486
            K DH NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAV
Sbjct: 57   KLDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAV 116

Query: 487  SVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKR 666
            SVGLETETI+SVLNKLSKTKLP E+IDFIHGSTANYGKVKLVLKKNRY VESPFPEVLKR
Sbjct: 117  SVGLETETIISVLNKLSKTKLPKEMIDFIHGSTANYGKVKLVLKKNRYLVESPFPEVLKR 176

Query: 667  LRKDNVISKAQINFE--------------DSHGVHEDLLNRAELATTIE-KETHSFEIDP 801
            L KD VIS+A++  E              +    H+ LLN AELA   E KETHSFE+DP
Sbjct: 177  LLKDEVISRARLVSEAHVNGSFTISKTAGEIGTSHDGLLNEAELAAAAEEKETHSFEVDP 236

Query: 802  SQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGR 981
            SQVENVKQRCLPNALNYPMLEEYD+RNDTVNPDL++ LKP    RPYQ+ SLSKMF NGR
Sbjct: 237  SQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGR 296

Query: 982  ARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCF 1161
            ARSGIIVLPCGAGKSLVGVSAACR+KKSCLCLATNAVSVDQWAFQF+LWSTI ++ I  F
Sbjct: 297  ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFQLWSTIREEQICRF 356

Query: 1162 TSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMF 1341
            TSD+KE+F+G AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMF
Sbjct: 357  TSDSKERFQGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 416

Query: 1342 RKVISITK 1365
            RKVIS+TK
Sbjct: 417  RKVISLTK 424


>ref|NP_568592.1| DNA repair helicase XPB1 [Arabidopsis thaliana]
            gi|57013137|sp|Q38861.3|XPB1_ARATH RecName: Full=DNA
            repair helicase XPB1; AltName: Full=ERCC3 homolog 1;
            AltName: Full=Protein araXPB; AltName: Full=RAD25 homolog
            1; Short=AtXPB1; AltName: Full=XPB homolog 1
            gi|11771735|gb|AAC49987.2| putative DNA repair protein
            and transcription factor [Arabidopsis thaliana]
            gi|14517424|gb|AAK62602.1| AT5g41370/MYC6_8 [Arabidopsis
            thaliana] gi|21360401|gb|AAM47316.1| AT5g41370/MYC6_8
            [Arabidopsis thaliana] gi|332007287|gb|AED94670.1| DNA
            repair helicase XPB1 [Arabidopsis thaliana]
          Length = 767

 Score =  585 bits (1509), Expect = e-164
 Identities = 305/425 (71%), Positives = 331/425 (77%), Gaps = 18/425 (4%)
 Frame = +1

Query: 145  GDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXX--GVKSEREIKKRDFTQLELKPDH 318
            G+GERGRP KK+K     +++                     E E KKRDFT+LELKPDH
Sbjct: 2    GNGERGRPNKKMKYGGKDDQKMKNIQNAEDYYDDADEDSRDGEGEEKKRDFTKLELKPDH 61

Query: 319  VNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL 498
             NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL
Sbjct: 62   GNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL 121

Query: 499  ETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRLRKD 678
            ETETI+SVLNKLSKTKLP E+I+FIH STANYGKVKLVLKKNRYF+ESPFPEVLKRL  D
Sbjct: 122  ETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYFIESPFPEVLKRLLSD 181

Query: 679  NVISKAQINFEDSHGVHE---------------DLLNRAELATTIE-KETHSFEIDPSQV 810
            +VI++A+ + E  +G                  +LLN AE A   E KETHSFEIDP+QV
Sbjct: 182  DVINRARFSSEPYYGGDGFSVGRTCGELEAGPGELLNEAEFAAAAEEKETHSFEIDPAQV 241

Query: 811  ENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGRARS 990
            ENVKQRCLPNALNYPMLEEYD+RND VNPDL++ LKP    RPYQ+ SLSKMF NGRARS
Sbjct: 242  ENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARS 301

Query: 991  GIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCFTSD 1170
            GIIVLPCGAGKSLVGVSAA R+KKSCLCLATNAVSVDQWAFQFKLWSTI DD I  FTSD
Sbjct: 302  GIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 361

Query: 1171 NKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKV 1350
            +KE+FRG AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMFRKV
Sbjct: 362  SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKV 421

Query: 1351 ISITK 1365
            ISITK
Sbjct: 422  ISITK 426


>ref|XP_006343950.1| PREDICTED: DNA repair helicase XPB1-like [Solanum tuberosum]
          Length = 768

 Score =  585 bits (1509), Expect = e-164
 Identities = 302/427 (70%), Positives = 332/427 (77%), Gaps = 20/427 (4%)
 Frame = +1

Query: 145  GDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXXGVKS----EREIKKRDFTQLELKP 312
            G G++ RP KK+K     +EE               G       ERE KK DFT+LELKP
Sbjct: 5    GHGDKSRPSKKIKFAS--KEEYRASTADDDQYYPEEGGDDFHDGEREGKKMDFTKLELKP 62

Query: 313  DHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 492
            DH NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
Sbjct: 63   DHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 122

Query: 493  GLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRLR 672
            GLETETI++VL+KLSKTKLP E+IDFIH STANYGKVKLVLKKNRYF+ESPFPEVLKRL 
Sbjct: 123  GLETETIIAVLSKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKRLL 182

Query: 673  KDNVISKAQINFEDSHGV---------------HEDLLNRAELATTIE-KETHSFEIDPS 804
             D+ I KA+I+ E  HG                H++L+N  ++A   E KETHSFEIDP+
Sbjct: 183  ADDAIGKARISSEGMHGKDGFTVSKPVNEIEGGHDELINEVDVAAAAEEKETHSFEIDPA 242

Query: 805  QVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGRA 984
            QVENVKQRCLPNALNYPM+EEYD+RNDTVNPDL++ LKPQ   RPYQ+ SLSKMF NGRA
Sbjct: 243  QVENVKQRCLPNALNYPMMEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRA 302

Query: 985  RSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCFT 1164
            RSGIIVLPCGAGKSLVGVSAA R+KKSCLCLATNAVSVDQWAFQFKLWSTI ++ I  FT
Sbjct: 303  RSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFT 362

Query: 1165 SDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFR 1344
            SD+KE+FRG  GVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMFR
Sbjct: 363  SDSKERFRGNVGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 422

Query: 1345 KVISITK 1365
            KVISITK
Sbjct: 423  KVISITK 429


>gb|AAT36215.1| DNA repair and transcription factor XPB1 [Arabidopsis thaliana]
          Length = 767

 Score =  585 bits (1509), Expect = e-164
 Identities = 305/425 (71%), Positives = 331/425 (77%), Gaps = 18/425 (4%)
 Frame = +1

Query: 145  GDGERGRPMKKLKATRVMEEEXXXXXXXXXXXXXXX--GVKSEREIKKRDFTQLELKPDH 318
            G+GERGRP KK+K     +++                     E E KKRDFT+LELKPDH
Sbjct: 2    GNGERGRPNKKMKYGGKDDQKMKNIQNAEDYYDDADEDSRDGEGEEKKRDFTKLELKPDH 61

Query: 319  VNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL 498
             NRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL
Sbjct: 62   GNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL 121

Query: 499  ETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVLKRLRKD 678
            ETETI+SVLNKLSKTKLP E+I+FIH STANYGKVKLVLKKNRYF+ESPFPEVLKRL  D
Sbjct: 122  ETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYFIESPFPEVLKRLLSD 181

Query: 679  NVISKAQINFEDSHGVHE---------------DLLNRAELATTIE-KETHSFEIDPSQV 810
            +VI++A+ + E  +G                  +LLN AE A   E KETHSFEIDP+QV
Sbjct: 182  DVINRARFSSEPYYGGDGFSVGRTSGELEAGPGELLNEAEFAAAAEEKETHSFEIDPAQV 241

Query: 811  ENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFRNGRARS 990
            ENVKQRCLPNALNYPMLEEYD+RND VNPDL++ LKP    RPYQ+ SLSKMF NGRARS
Sbjct: 242  ENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARS 301

Query: 991  GIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNISCFTSD 1170
            GIIVLPCGAGKSLVGVSAA R+KKSCLCLATNAVSVDQWAFQFKLWSTI DD I  FTSD
Sbjct: 302  GIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 361

Query: 1171 NKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPAHMFRKV 1350
            +KE+FRG AGVVVTTYNM+AFGG                 WGLLLMDEVHVVPAHMFRKV
Sbjct: 362  SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKV 421

Query: 1351 ISITK 1365
            ISITK
Sbjct: 422  ISITK 426


>ref|XP_002870639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297316475|gb|EFH46898.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 779

 Score =  585 bits (1507), Expect = e-164
 Identities = 306/431 (70%), Positives = 331/431 (76%), Gaps = 26/431 (6%)
 Frame = +1

Query: 151  GERGRPMKKLKA----------TRVMEEEXXXXXXXXXXXXXXXGVKSEREIKKRDFTQL 300
            GERGRP KK+K            +  E+                 +  E E KKRDFT+L
Sbjct: 8    GERGRPNKKIKYGDKDDQKMKNIQNAEDYYDEDDEDSRDGELTLSLYGEGEEKKRDFTKL 67

Query: 301  ELKPDHVNRPLWACADGRIILETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA 480
            ELKPDHVNRPLWACADGRI LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA
Sbjct: 68   ELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYA 127

Query: 481  AVSVGLETETIVSVLNKLSKTKLPSEIIDFIHGSTANYGKVKLVLKKNRYFVESPFPEVL 660
            AVSVGLETETI+SVLNKLSKTKLP E+I+FIH STANYGKVKLVLKKNRYF+ESPFPEVL
Sbjct: 128  AVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYFIESPFPEVL 187

Query: 661  KRLRKDNVISKAQINFEDSHGVHE---------------DLLNRAELATTIE-KETHSFE 792
            KRL  D+VI++A+ + E  +G                  +LLN AELA   E KETHSFE
Sbjct: 188  KRLLSDDVINRARFSSEPYYGGDGFTIGKTSGELEAGPGELLNEAELAAAAEEKETHSFE 247

Query: 793  IDPSQVENVKQRCLPNALNYPMLEEYDYRNDTVNPDLNIALKPQKHERPYQQTSLSKMFR 972
            IDP+QVENVKQRCLPNALNYPMLEEYD+RND VNPDL++ LKP    RPYQ+ SLSKMF 
Sbjct: 248  IDPAQVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFG 307

Query: 973  NGRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDDNI 1152
            NGRARSGIIVLPCGAGKSLVGVSAA R+KKSCLCLATNAVSVDQWAFQFKLWSTI DD I
Sbjct: 308  NGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQI 367

Query: 1153 SCFTSDNKEKFRGLAGVVVTTYNMIAFGGXXXXXXXXXXXXXXXXXWGLLLMDEVHVVPA 1332
              FTSD+KE+FRG AGVVVTTYNM+AF G                 WGLLLMDEVHVVPA
Sbjct: 368  CRFTSDSKERFRGNAGVVVTTYNMVAFSGKRSEESEKIIEEMRNREWGLLLMDEVHVVPA 427

Query: 1333 HMFRKVISITK 1365
            HMFRKVISITK
Sbjct: 428  HMFRKVISITK 438