BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00026971
         (1803 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E sub...   506   e-140
ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub...   499   e-138
ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V sub...   493   e-136
gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Ae...   489   e-135
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              474   e-131
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   474   e-131
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   463   e-128
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo...   454   e-125
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus...   451   e-124
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   447   e-123
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr...   446   e-122
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   445   e-122
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   444   e-122
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   444   e-122
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   444   e-122
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   442   e-121
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...   438   e-120
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   437   e-120
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   431   e-118
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   429   e-117

>ref|XP_004951807.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Setaria
            italica]
          Length = 2038

 Score =  506 bits (1302), Expect = e-140
 Identities = 281/613 (45%), Positives = 375/613 (61%), Gaps = 12/613 (1%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            L+LNDC C K+FCKE+A   V +CL++V L D A +  IE++KQI+L   SE    LVGH
Sbjct: 887  LFLNDCSCPKKFCKERAALTVQSCLRRVTLADCATDISIEHQKQINLDETSEAAPTLVGH 946

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            +HLDK QL+  N +  +IL KC+++  +Y KKKG L    K++  S C+C   +   DG 
Sbjct: 947  IHLDKAQLERINISTQDILQKCEEISGRYGKKKGHLCHLFKKITFSTCDCSFAQNTIDGY 1006

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
            L   PC+QF+F D NT  + ES+E A++V+A  +C +LLDTI+KGDPR+  AKI+W+E +
Sbjct: 1007 LHVAPCVQFSFSDDNTILS-ESVERAVNVIADSVCSVLLDTIIKGDPRIQSAKIIWVESE 1065

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
            ATSW  N+  TLKGE  LEI++EK     NG AWR +MDAC+PV++LIDT RS PYGIQQ
Sbjct: 1066 ATSWVKNTQNTLKGEPTLEIIVEKDEAVRNGYAWRTVMDACIPVLNLIDTRRSIPYGIQQ 1125

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLGISCAFDQ V+RLS +++MV+KGV+K+HL+LVANS+TCTGNL+GFNT GYKA FR
Sbjct: 1126 VKELLGISCAFDQVVQRLSTTVKMVAKGVLKDHLILVANSMTCTGNLIGFNTSGYKATFR 1185

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            S KVQVPFT +TLFTPMKCFE AAEKC +DSL  VVSSCSWGK  AIGTG+ FQILW++N
Sbjct: 1186 SLKVQVPFTESTLFTPMKCFEKAAEKCDSDSLGCVVSSCSWGKHAAIGTGSSFQILWNEN 1245

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSGEATGACLADVDDIIEDQEM-EVCLSPV---ANGHM 1248
            Q   +K+ G G+YDFL ++  T   +A  A L DVD ++E+  + +VCLSP     +G  
Sbjct: 1246 QLKSNKEYGDGLYDFLALVR-TDQEKAGYAFLDDVDYLVEENAVDDVCLSPEPDGTHGKP 1304

Query: 1249 TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGKMAETNAWS 1428
            TFE+N E E   +   + EN    NS  +  +  G+ SG+W GW +   +         S
Sbjct: 1305 TFEDNVE-EQGIQNGSSWENDTTMNSSWEQNASAGNDSGDWGGWSNGAAAATKPLDQDNS 1363

Query: 1429 SWDSQ---HMGQITVGSWENKDSQNCSDPSVELNAW---GKGTEKNVA--SWETRSVKSS 1584
             WD+           G W  +   N      E+N W   G G E +    +WE   +KSS
Sbjct: 1364 CWDAHATVENNSTDWGGWGTEKQTN--GEQAEINTWADKGAGMESSAGDDNWE---MKSS 1418

Query: 1585 GGDIWNEKVTKNLEEKEGTSVWKNISWRPKGNSNEDAFSLPGTLDSESSKEPWVVGARDN 1764
                  EK  KNL+       W N               +P    + +S+  W     D 
Sbjct: 1419 A----PEKSKKNLDH----DTWGN---------------MPAPASASASENTWGEQKGDG 1455

Query: 1765 TGNSWKNGPDAAK 1803
               +W+    + K
Sbjct: 1456 GDGAWEKQTGSCK 1468


>ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
            distachyon]
          Length = 1935

 Score =  499 bits (1286), Expect = e-138
 Identities = 288/620 (46%), Positives = 382/620 (61%), Gaps = 23/620 (3%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            L+LNDC C K+FCKEKA  AV N LK+V L+D A +  IEY KQI L   SE    LVGH
Sbjct: 867  LFLNDCSCPKKFCKEKAAIAVQNRLKRVTLEDCATDICIEYHKQI-LDGSSEATPALVGH 925

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPH-DG 357
            +HL+K +L + N + ++IL KCQ+V  K+ KKKG L    K++  S C+C   ++P  DG
Sbjct: 926  IHLEKARLDMINVSTEDILQKCQEVSLKHGKKKGHLGHLFKKITFSTCDCSFTQKPMIDG 985

Query: 358  DLCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEP 537
             L   PCLQF+F + +     ES+E A+ V+A  +C +LLDTI+KGDPR+ EAKI+W+  
Sbjct: 986  KLPKVPCLQFSFSE-DIPMLSESVERAVSVLANSLCDVLLDTIIKGDPRIQEAKIMWVGS 1044

Query: 538  DATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQ 717
            DA SW  N+ K  KGE  +EIV+EK    + GDAWR+ MDAC+PV+ LIDT RS PYGIQ
Sbjct: 1045 DAQSWVKNTRKVSKGEPTVEIVVEKNEASKQGDAWRIAMDACIPVIDLIDTRRSIPYGIQ 1104

Query: 718  QNRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALF 897
            Q RELLGISC+FDQ V+RLS +++ V+KG++K+HL+LVANS+TCTGNL GFNTGGY+A F
Sbjct: 1105 QVRELLGISCSFDQIVQRLSTTMKTVAKGILKDHLILVANSMTCTGNLYGFNTGGYRATF 1164

Query: 898  RSFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDK 1077
            R+ KVQVPFT +TLFTPMKCFE AAEKC +D+L  VVSSCSWGK  A+GTG+ FQILW++
Sbjct: 1165 RALKVQVPFTESTLFTPMKCFEKAAEKCHSDALGCVVSSCSWGKHAALGTGSSFQILWNE 1224

Query: 1078 NQTAMHKDIGKGVYDFLEMLNPTLSGEATGACLADVDDIIEDQEM-EVCLSPVANGH--- 1245
            NQ   +K+ G G+YDFL M+  T   +A    L DVD ++ED  M ++CLSP  NG    
Sbjct: 1225 NQLKSNKEYGDGLYDFLAMVR-TDQEKARYTFLDDVDYLVEDNAMDDICLSPELNGTHGV 1283

Query: 1246 MTFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGKMAETNAW 1425
             TFE+N E + +   N + EN    N+  +  +  G+ S NW GW    ++   A+T A 
Sbjct: 1284 PTFEDNFEHQDTQNGN-SWENGTKANASWEQNASAGNDSDNWGGW---SNAAAAADTGAA 1339

Query: 1426 -------SSWD---SQHMGQITVGSWEN---KDSQNCSDPSVELNAWG-KGTEKNVASWE 1563
                   SSWD   +        G W N   KD++  S    EL+ W  +G +K      
Sbjct: 1340 KPADQGNSSWDVPATAENDSTDWGGWGNEKAKDNRTVSTEPAELDTWSDRGAKKGT---- 1395

Query: 1564 TRSVKSSGGDIWNEKVTKNLEEKEGTSVWKNISWRPKGNSNEDAFSLPGTLDSESSKEPW 1743
                   GG  W ++   N  E  GT++ +N SW  + +S   + S     +S+     W
Sbjct: 1396 -----DGGGGSWGKQT--NTCEDSGTNLERN-SWAKRPSS--PSLSTWAKKNSDGGDGTW 1445

Query: 1744 VVGARDNTGN----SWKNGP 1791
               A     N    SWKN P
Sbjct: 1446 DKQANSCKKNVEQDSWKNMP 1465


>ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Oryza
            brachyantha]
          Length = 1993

 Score =  493 bits (1269), Expect = e-136
 Identities = 278/624 (44%), Positives = 374/624 (59%), Gaps = 23/624 (3%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            L+LNDC C K+FCKEKA  AV  CL+++ L+D A +  IEY+KQI L   SE    LVGH
Sbjct: 886  LFLNDCSCAKKFCKEKAAIAVQGCLRRITLEDCATDICIEYQKQISLDGTSEASPALVGH 945

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            +H D+  L+  N +I++I  KCQ+V  KY KKKG LS   K +  S+C+C   ++  DG 
Sbjct: 946  IHFDRAHLERINVSIEDIFQKCQEVSGKYGKKKGHLSHLFKNITFSICDCSFTQKLIDGK 1005

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
            L   PCLQF F ++NT  + ES+E A++++A  +C +LL+TI+KGDPR+ EAKIVW+  D
Sbjct: 1006 LAKVPCLQFFFPESNTMLS-ESVEGAVNLLADSVCGVLLNTIIKGDPRIQEAKIVWVGSD 1064

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
            ATSW  N+ K  KGE  +EI++E+      GD+WR+ MDAC+PV+ LIDT RS PYGIQQ
Sbjct: 1065 ATSWVKNTKKESKGEPAVEIIVEEQEALHTGDSWRITMDACIPVLDLIDTRRSIPYGIQQ 1124

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             RELLGISCAFDQ V+RLS ++RMV+K V+K+HL+LVANS+T TGNL GFNT GYK  FR
Sbjct: 1125 LRELLGISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNTAGYKTTFR 1184

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            S KVQVPFT +TL TPMKCFE AAEKC +DSL  VVSSCSWGK  A GTG+ FQILW+++
Sbjct: 1185 SLKVQVPFTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKYAASGTGSSFQILWNES 1244

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSGEATGACLADVDDIIEDQEMEVCLSPVANGHM---T 1251
            Q   +K+ G G+YD+L ++  T   +A      DVD + E+ E +VCLSP   G +   T
Sbjct: 1245 QLKSNKEYGDGLYDYLALVR-TDEEKARYTFFDDVDYLAEENETDVCLSPELEGTIGQPT 1303

Query: 1252 FEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGKMAET----N 1419
            F++N E E  F+KN + EN    N   +     GD S  W GW +       A T     
Sbjct: 1304 FDDNLE-EQDFQKNNSWENGTAANGSWEQNGSAGDDSDKWGGWNAAAVGADTAVTKQADQ 1362

Query: 1420 AWSSWDSQHMGQITVGSW------ENKDSQNCSDPSVELNAWGKGTEKNVASWETRSVKS 1581
              S WD     + +   W      + K  +N  +   E +AW             RS+  
Sbjct: 1363 EKSCWDVPAAVEKSSSDWGGWGTEKRKVKENLPEEPAEHDAW----------LAKRSM-- 1410

Query: 1582 SGGDI-WNEK--VTKNLEEKEGTSVWKNIS-------WRPKGNSNEDAFSLPGTLDSESS 1731
             GGDI W ++  ++   ++      W N+S       W  K     DA     T + +SS
Sbjct: 1411 DGGDINWGKQPSISDEFKKNVDQGSWGNMSLSAENRAWDKKKPDGGDA-----TWNKQSS 1465

Query: 1732 KEPWVVGARDNTGNSWKNGPDAAK 1803
                    +++ G++W+  P A K
Sbjct: 1466 -------TQNDGGDTWEKQPSAWK 1482


>gb|EMT23234.1| DNA-directed RNA polymerase II subunit RPB1-B [Aegilops tauschii]
          Length = 2017

 Score =  489 bits (1258), Expect = e-135
 Identities = 276/626 (44%), Positives = 387/626 (61%), Gaps = 45/626 (7%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            L+LNDC C K+FCKEKA  AV  CLK+V L+D A +  IEY+KQ+ L   SE     VGH
Sbjct: 983  LFLNDCSCPKKFCKEKAAIAVQGCLKRVTLEDCATDICIEYKKQVSLDAISEATPAFVGH 1042

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            +HL+K  L+  N + DEIL KCQ+V  K+  KKG L    K++  S C+C   ++P DG 
Sbjct: 1043 IHLEKAHLEKINVSTDEILQKCQEVSGKHANKKGTLGHLFKKITFSTCDCSFAQKPGDGK 1102

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
            +   PCLQF+F +     +D S+E A++V+A  +C +LL+ I+KGDPRV EAKI W+  D
Sbjct: 1103 V---PCLQFSFSEDIPMLSD-SVEKAVNVLADSLCGVLLEIIIKGDPRVQEAKITWVGSD 1158

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
            ATSW  ++ K  KGE  +EI++EK    +NGDAWR+ MDAC+PVM+LIDT RS PYGIQQ
Sbjct: 1159 ATSWVKHTKKISKGEPAVEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQ 1218

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             RELLGISC+FDQ V+RLS++++ V+KG++K+HL+LVANS+TCTGNL GF+ GGY+A FR
Sbjct: 1219 VRELLGISCSFDQVVQRLSKTMKTVAKGILKDHLVLVANSMTCTGNLNGFHNGGYRATFR 1278

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            S KVQVPFT ATL TPMKCFE AAEKC +DSL SVVSSCSWGK  A+GTG+ FQILW++N
Sbjct: 1279 SLKVQVPFTEATLLTPMKCFEKAAEKCHSDSLGSVVSSCSWGKHAALGTGSSFQILWNEN 1338

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSGEATGACLADVDDIIEDQEM-EVCLSPV---ANGHM 1248
            Q   +K+ G G+YDFL ++  T   +A    L DVD ++ED  M ++CLSP     +G  
Sbjct: 1339 QLKSNKEYGDGLYDFLALVR-TDQEKAAYTFLDDVDYLVEDNAMDDICLSPEMDGTHGMP 1397

Query: 1249 TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGN-------------WQGW--- 1380
            TFE++ E + + +K+ + EN     +  +  ++ G+ SGN             W GW   
Sbjct: 1398 TFEDDPE-QQNTEKDSSWENGTTAGASWERNANAGNDSGNWGGGSTVENDSTDWAGWGTG 1456

Query: 1381 ---ESRQDSGKMAETNAWSSWDSQHMGQITVGSWEN-------------KDSQNC--SDP 1506
               + +  SG+ AE + W+    Q   + T G W N             +  ++C  + P
Sbjct: 1457 PANDKKIVSGEPAEPDTWA---DQGAKKDTEGGWNNAAAAADTGAAKPAEQDKSCWNAPP 1513

Query: 1507 SVELNA-----WGKGT--EKNVASWETRSVKSSGGDIWNEKVTKNLEEKEGTSVWKNISW 1665
            +VE ++     WG G   +KN+AS  +  V     D W ++  K  +   G + W  +  
Sbjct: 1514 AVENDSSGWGGWGTGNAKDKNIASEGSAEV-----DTWADQSGKR-DTDGGGANWDKMKV 1567

Query: 1666 RPKGNSNEDAFSLPGTLDSESSKEPW 1743
            +   N  +D +    + + ++  +PW
Sbjct: 1568 KDH-NMQQDQWGHVPSQNVDAQDDPW 1592


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  474 bits (1221), Expect = e-131
 Identities = 258/613 (42%), Positives = 369/613 (60%), Gaps = 18/613 (2%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C +++C+E A Y V N LKK  LKD A EF IEY KQ  +   SE  +GLVGH
Sbjct: 943  LYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGH 1002

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            +HL+K  L+  N ++ E+  KC++ +  + KKK  +  F K+++LS  ECC ++      
Sbjct: 1003 IHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKN-VGPFFKKIILSFRECCTFQHSCQSK 1061

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL F +        D++LE  +H++A  ICP+LL TI+KGD RV    I+WI PD
Sbjct: 1062 GSDMPCLLFFW----QGNRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPD 1117

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
             T+W  N CK+ KGEL L+IVLEKAAV++ GDAWR+++DACLPV+HLIDT RS PY I+Q
Sbjct: 1118 TTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQ 1177

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLGISCAFDQAV+RLS+S+ MV+KGV+KEHL+L+ANS+TC GNL+GFN+GGYKAL R
Sbjct: 1178 VQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSR 1237

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            +  +QVPFT ATLFTP KCFE A+EKC TDSL+S+V+SCSWGK V +GTG+ F +LWD  
Sbjct: 1238 ALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTK 1297

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSG-EATGACL-ADVDD-IIEDQEMEVCLSPVANGHMT 1251
            +    +D G  +Y FL ++     G E   ACL A+V+D I+ED+ +E+ +SP       
Sbjct: 1298 EIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSP------- 1350

Query: 1252 FEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGKMAETNAWSS 1431
                 E   +F+K + +++ + +N+  +     G   G+W   ++++ +    + +AWSS
Sbjct: 1351 -----EHSSNFEKPVFEDSAEFQNTWENHVPGSG---GDWAVNQNKETTASTLKPSAWSS 1402

Query: 1432 WDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVASWETR--SVKSSGGD---- 1593
            W +  +      S    D  + S    +   WG    +N A   T   S +SSG D    
Sbjct: 1403 WGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDETFR 1462

Query: 1594 ---------IWNEKVTKNLEEKEGTSVWKNISWRPKGNSNEDAFSLPGTLDSESSKEPWV 1746
                      W +K+ +   +K G   W     +P+ +   +++     +  E + +   
Sbjct: 1463 DGRPQFASSAWGKKIDE--ADKTG---WNKNDGKPQMDKLRESYDWDCKVAQEKTTQSTY 1517

Query: 1747 VGARDNTGNSWKN 1785
             G    TG+  KN
Sbjct: 1518 GGISSTTGDWKKN 1530


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  474 bits (1221), Expect = e-131
 Identities = 258/613 (42%), Positives = 369/613 (60%), Gaps = 18/613 (2%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C +++C+E A Y V N LKK  LKD A EF IEY KQ  +   SE  +GLVGH
Sbjct: 883  LYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGH 942

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            +HL+K  L+  N ++ E+  KC++ +  + KKK  +  F K+++LS  ECC ++      
Sbjct: 943  IHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKN-VGPFFKKIILSFRECCTFQHSCQSK 1001

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL F +        D++LE  +H++A  ICP+LL TI+KGD RV    I+WI PD
Sbjct: 1002 GSDMPCLLFFW----QGNRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPD 1057

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
             T+W  N CK+ KGEL L+IVLEKAAV++ GDAWR+++DACLPV+HLIDT RS PY I+Q
Sbjct: 1058 TTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQ 1117

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLGISCAFDQAV+RLS+S+ MV+KGV+KEHL+L+ANS+TC GNL+GFN+GGYKAL R
Sbjct: 1118 VQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSR 1177

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            +  +QVPFT ATLFTP KCFE A+EKC TDSL+S+V+SCSWGK V +GTG+ F +LWD  
Sbjct: 1178 ALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTK 1237

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSG-EATGACL-ADVDD-IIEDQEMEVCLSPVANGHMT 1251
            +    +D G  +Y FL ++     G E   ACL A+V+D I+ED+ +E+ +SP       
Sbjct: 1238 EIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSP------- 1290

Query: 1252 FEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGKMAETNAWSS 1431
                 E   +F+K + +++ + +N+  +     G   G+W   ++++ +    + +AWSS
Sbjct: 1291 -----EHSSNFEKPVFEDSAEFQNTWENHVPGSG---GDWAVNQNKETTASTLKPSAWSS 1342

Query: 1432 WDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVASWETR--SVKSSGGD---- 1593
            W +  +      S    D  + S    +   WG    +N A   T   S +SSG D    
Sbjct: 1343 WGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDETFR 1402

Query: 1594 ---------IWNEKVTKNLEEKEGTSVWKNISWRPKGNSNEDAFSLPGTLDSESSKEPWV 1746
                      W +K+ +   +K G   W     +P+ +   +++     +  E + +   
Sbjct: 1403 DGRPQFASSAWGKKIDE--ADKTG---WNKNDGKPQMDKLRESYDWDCKVAQEKTTQSTY 1457

Query: 1747 VGARDNTGNSWKN 1785
             G    TG+  KN
Sbjct: 1458 GGISSTTGDWKKN 1470


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score =  463 bits (1192), Expect = e-128
 Identities = 247/529 (46%), Positives = 343/529 (64%), Gaps = 8/529 (1%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC CR+ +C+EKA Y V N L KVCLKD A EF IEY  +      SET +GL+GH
Sbjct: 883  LYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYENSETGTGLIGH 942

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            + L++ QL+    ++ E+  +CQ+ +  + KKK ++    KR+VLSV E C++       
Sbjct: 943  IRLNQGQLENLGISVLEVHERCQENISSFQKKK-KIGNLFKRIVLSVSEFCSFCHNSGSK 1001

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
              + PCL+F++ DA+    D+ LE   H++A +ICPILLDT++KGDPRV  A I WI PD
Sbjct: 1002 CLNAPCLRFSWPDAS----DDHLERVSHILADMICPILLDTVIKGDPRVSSANIAWISPD 1057

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
              SW  +  K+ +GEL L+IVLEK AV++ GDAWR+LMD+CLPV+HLIDT+RS PY I+Q
Sbjct: 1058 TMSWIRSPSKSQRGELALDIVLEKEAVKQRGDAWRILMDSCLPVIHLIDTTRSIPYAIKQ 1117

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +EL+GISCAF+QAVKRLS S+ MV+KGV+K+HL+L+ANS+TC GNLVGFN GG KAL R
Sbjct: 1118 VQELIGISCAFEQAVKRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSR 1177

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            S  VQ+PFT ATLFTP KCFE AAEKC  DSL+S+V+SCSWGK VA+GTG+ F++L +  
Sbjct: 1178 SLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTR 1237

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSGEATG-ACL-ADVDDIIEDQEMEVCLSPVANGHM-- 1248
                +    + VY FL ++  T + E  G +CL A++D++ ED++M + LSP  +     
Sbjct: 1238 NVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLSPNRDSGSEM 1297

Query: 1249 -TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGK---MAET 1416
             TFE+  E +Y    N N +  K   S  + AS    KSG       +  +G    + ++
Sbjct: 1298 PTFEDRAEFDY----NENLDEGKPSGSAWEKASSGSVKSGGSWDMAGKTQNGAEEGVNQS 1353

Query: 1417 NAWSSWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVASWE 1563
            ++WS+W     G+       N+      + S   ++WGK  EK+  SW+
Sbjct: 1354 DSWSAW-----GKKVDEPENNRQQSGSGEQSGSWSSWGKKVEKDGGSWD 1397


>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
          Length = 2017

 Score =  454 bits (1169), Expect = e-125
 Identities = 273/670 (40%), Positives = 369/670 (55%), Gaps = 75/670 (11%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKV---------CLKD--WARE------------- 108
            L+LNDC C K+FCKEKA  AV  CL+++         C++D  WA               
Sbjct: 886  LFLNDCSCAKKFCKEKAAIAVQGCLRRITLEDCATDICIEDGNWAAPAGFQHPVPPPQCK 945

Query: 109  -------------------------------FYIEYRKQIDLPNKSETFSGLVGHVHLDK 195
                                             + Y+KQI L   SE    LVGH+HLD+
Sbjct: 946  ILPVPIPIPAHGSVKFPPVPIPAPEHLKYNIHVVRYQKQIGLDGTSEAAPALVGHIHLDR 1005

Query: 196  TQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGDLCHFP 375
              L+  N + ++IL KCQ+V  KY KKKG LS   K +  S C+C   ++  DG L   P
Sbjct: 1006 AHLERINISTEDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCLFTQKLVDGKLPKLP 1065

Query: 376  CLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPDATSWA 555
            CLQF FV  N   + ES+E A+ V+A  +C +LL+TI+KGDPR+ EAKIVW+  DATSW 
Sbjct: 1066 CLQF-FVSDNMIVS-ESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKIVWVGSDATSWV 1123

Query: 556  ANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQNRELL 735
             N+ K  KGE  +EI++E+      GDAWR  MDAC+PV++LID  RS PYGIQQ RELL
Sbjct: 1124 KNTQKASKGEPAVEIIVEEEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELL 1183

Query: 736  GISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFRSFKVQ 915
            GISCAFDQ V+RLS ++RMV+K V+K+HL+LVANS+T TGNL GFN  GYKA FRS KVQ
Sbjct: 1184 GISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQ 1243

Query: 916  VPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKNQTAMH 1095
            VPFT +TL TPMKCFE AAEKC +DSL  VVSSCSWGK  A GTG+ FQILW+++Q   +
Sbjct: 1244 VPFTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSN 1303

Query: 1096 KDIGKGVYDFLEMLNPTLSGEATGACLADVDDIIEDQEMEVCLSPVANGHM---TFEENH 1266
            K+ G G+YD+L ++  T   +A      DVD + E+ E +VCLSP  +G +    F++N 
Sbjct: 1304 KEYGDGLYDYLALVR-TDEEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNL 1362

Query: 1267 EVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWE---SRQDSGKMAETNAWSS-W 1434
            E E   + N + +N    N+  +     G+ S  W GW    +  D+G     N  +S W
Sbjct: 1363 E-EQDVQNNSSWDNGTTTNASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKPANQGNSCW 1421

Query: 1435 DSQHMGQITVGSW------ENKDSQNCSDPSVELNAWG----KGTEKNVASWETRSVKSS 1584
            D     + +   W      + K+ +  S+   + +AW     K      ASW+ +S   +
Sbjct: 1422 DVPATVEKSSSDWGGWGTEKAKEKEKISEEPAQHDAWSVQGPKRATDGGASWKKQSSTQN 1481

Query: 1585 GGDIWNEKVTKNLEEKEGTSVWKNISWRPKGNSNEDAFSLPGTLDSESSKEPWVVGARD- 1761
             G+ W E   K      G+    N      G  N++A +     +++   + W   A D 
Sbjct: 1482 DGNSWKE--NKGRGSNGGSWEKDNAQKGSWGRGNDEAEN-----NNDVQNKSWETVAADA 1534

Query: 1762 --NTGNSWKN 1785
              +T  SW N
Sbjct: 1535 HASTEKSWGN 1544


>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  451 bits (1159), Expect = e-124
 Identities = 251/629 (39%), Positives = 368/629 (58%), Gaps = 28/629 (4%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C   +C+E A Y V + L+KV LKD A EF IEY++Q      SET +GLVGH
Sbjct: 883  LYLNDCDCGGNYCRENAAYKVKDQLRKVNLKDAAVEFVIEYQEQRIQKGNSETDAGLVGH 942

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            ++LD+  L+    ++  +  KC + L  ++ +K + +QF+KR  LS  E C+   P    
Sbjct: 943  IYLDEMMLEELKISMAHVFQKCLERLKSFSPRK-KANQFLKRTELSYSESCSSSHPAA-- 999

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL F +V+      +   +  + ++++ ICP+LL+TI++GDPR+  A I+W+ PD
Sbjct: 1000 ----PCLTFVWVE----DRNNEFDYTVKILSEKICPVLLETIIQGDPRISSASIIWVTPD 1051

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
              +W  N  K+  GEL L+I+LEK  V+++GDAWR+++D+CLPV+HLIDT RS PY I+Q
Sbjct: 1052 TNTWVRNPYKSSTGELALDIILEKEVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQ 1111

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLGISC FDQA++R++ S++MV+KGV++EHL+L+A+S+TC GN+VGFNTGGYKAL R
Sbjct: 1112 TQELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNMVGFNTGGYKALSR 1171

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
               +QVPFT ATLFTP KCFE AAEKC TDSL+S+V+SCSWGK VA+GTG+ F I+WD N
Sbjct: 1172 QLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDIVWDAN 1231

Query: 1081 QTAMHKDIGKGVYDFLEML-NPTLSGEATGACLA-DVDDIIEDQEMEVCLSPVANG--HM 1248
            +    +  G  VY FL M+   T   E T ACL  D+DD++E++ +++ +SP  N     
Sbjct: 1232 KIRSSEIEGMDVYSFLHMVKGRTDREEETDACLGEDIDDLLEEENLDLEMSPPRNSGFEA 1291

Query: 1249 TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGW-----ESRQDSGKMAE 1413
             FEEN EV           N    N     +S    K+  W GW     E+ +     A+
Sbjct: 1292 VFEENPEV----------LNNSTSNGWDVNSSQTESKTNGWSGWVSNKAETNEGRSDRAQ 1341

Query: 1414 TNAWSSWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVASWETRSVKSSGGD 1593
             ++W    +Q     +  +W    + + +  S E +AWG   +  + +  +  V+ S   
Sbjct: 1342 ESSWGKTVTQEDSSKS-SAWNTNTTGHTNTKSNEWSAWG-SKKSEIQAGGSEKVEGS--- 1396

Query: 1594 IWNEKVTKNLEEKE--GTSVW----------KNISWRPKGNSNEDAFSLPGTLDSESSKE 1737
             W    TK++ +K+  G+  W          K+  W   GN+N +   L G   SE+ ++
Sbjct: 1397 -WGSGKTKDVTQKDNFGSGAWGANKTDQAKTKSNEWSSWGNNNSEI--LAG--GSENMQD 1451

Query: 1738 PWVVGARDN-------TGNSWKNGPDAAK 1803
             W  G R +       T  +W    D  K
Sbjct: 1452 SWGSGGRKDVTQEGNVTSGAWGANVDQTK 1480


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  447 bits (1149), Expect = e-123
 Identities = 239/558 (42%), Positives = 346/558 (62%), Gaps = 8/558 (1%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C    C+E A Y+V N L+KV LK+ A EF IEY++Q      SET +GLVGH
Sbjct: 887  LYLNDCDCGGSCCRENAAYSVKNQLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGH 946

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            ++LD+  L+    ++  +  KC + L  +++KK +++Q++K + LS  E C+   P    
Sbjct: 947  IYLDEMMLEELKISMANVFEKCLERLKSFSRKK-KVNQYLKNIELSFSESCSSSHPAA-- 1003

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL F   +     +D  L+ A+ V+++ ICP+L +TI+KGDPR+  A I+W+ PD
Sbjct: 1004 ----PCLTFWLKN-----HDSDLDNAVKVLSENICPVLFETIIKGDPRISSASIIWVSPD 1054

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
              +W  N  K+  GEL L+IVLE+ AV+++GDAWR+++D+CLPV+HLIDT RS PY I+Q
Sbjct: 1055 TNTWVRNPYKSSNGELALDIVLEEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQ 1114

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLGISC FDQA++R++ S++MV+KGV++EHL+L+A+S+TC GNLVGFNTGGYKAL R
Sbjct: 1115 IQELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSR 1174

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
               +QVPFT ATLFTP KCFE AAEKC TDSL+S+V+SCSWGK VA+GTG+ F I+WD +
Sbjct: 1175 QLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSS 1234

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSG-EATGACLA-DVDDIIEDQEMEVCLSPVANG--HM 1248
            +   ++  G  VY FL M+    +G E T ACL  D+DD++E++ M++ +SP  N     
Sbjct: 1235 EIKSNEIEGMDVYSFLHMVKSVTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEA 1294

Query: 1249 TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGK--MAETNA 1422
             FEEN EV           N    N     ++    K+  W GW S    G+   A+ N+
Sbjct: 1295 VFEENPEV----------LNGSTSNGWDVSSNQTQSKTNEWSGWASSNKDGRSETAQENS 1344

Query: 1423 WSSWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVASWETRSVK--SSGGDI 1596
            W    +Q     +     +  +      S E + WG   +  + +  +++V+  SS  + 
Sbjct: 1345 WGKTVNQEDSSKSNAWNTSTTADQTKTKSNEWSDWG-SNKSEIPAGGSKAVQEDSSKSNA 1403

Query: 1597 WNEKVTKNLEEKEGTSVW 1650
            WN   T N + K  +  W
Sbjct: 1404 WNTSTTSN-QTKTKSKEW 1420


>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
            gi|557112419|gb|ESQ52703.1| hypothetical protein
            EUTSA_v10016128mg [Eutrema salsugineum]
          Length = 1874

 Score =  446 bits (1146), Expect = e-122
 Identities = 252/650 (38%), Positives = 378/650 (58%), Gaps = 51/650 (7%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLN+C C K++C+E A Y V N LKKV LK+ A EF +EYRKQ  +       S L GH
Sbjct: 879  LYLNECRCGKKYCQENAAYTVRNKLKKVSLKETAVEFLVEYRKQQAISEIFGNDSSLRGH 938

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            +HL+KT L+ +N ++ +IL KC+D +    +KK + +   KR  LS  ECC+++ P    
Sbjct: 939  IHLNKTLLQEWNISMQDILQKCEDAINSLVQKKKKKADDFKRTNLSFSECCSFRDPCASK 998

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL F+  +A     D  LE  + V+   I P+LL+T++KGDPR+F A I W  P+
Sbjct: 999  DSDMPCLMFSSYNAT----DPDLERTLDVLCHTIYPVLLETVIKGDPRIFSANITWNSPE 1054

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
             T+W  N   + +GE  L++ +EK+AV+++GDAWR++MD+CL V+HLIDT+RS PY I+Q
Sbjct: 1055 TTTWIWNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVMDSCLSVLHLIDTTRSIPYSIKQ 1114

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLG+SCAF+QAV+RLS S+RMVSKGV+KEH++LVAN++TC+GN++GFN+GGYKAL R
Sbjct: 1115 VQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILVANNMTCSGNMLGFNSGGYKALTR 1174

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            S  ++ PFT ATL TP KCFE AAEKC TDSL++VV SCSWGK+V +GTG+ F++LW+K 
Sbjct: 1175 SLNIKAPFTEATLITPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSKFELLWNKK 1234

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSGEATGACLADVDDIIEDQEMEVCLSP---VANGHMT 1251
            +T +  +    VY FL+M+  T + +A  +  +   D+ E+   E   SP    A G + 
Sbjct: 1235 ETGLENENETDVYSFLQMVRSTTNADAYAS--SPGFDVTEEDMAEWAESPERDSALGELK 1292

Query: 1252 FEENHEVEYSFKKNLNQENRKIENS-------------CRDFASDFGDKSGNWQ------ 1374
            FE++ E +     N++ E +  E+               R+   +   +SG W+      
Sbjct: 1293 FEDSAEFQ-----NIHDEGKPSESKWDNGFSGGSEWDLSRNTGGEENPQSG-WEKTTNVE 1346

Query: 1375 ------GWESRQDSGKMAETNAWSSWDSQHMGQ--ITVGSWENKDSQNCS------DPSV 1512
                  GW S++D+ + + +++W +W S+       T  SWE + +Q  S      +PSV
Sbjct: 1347 KEDASSGWNSKKDAQESSRSDSWRAWGSKPKDNDANTTPSWETRPAQKDSMVIENNEPSV 1406

Query: 1513 EL--------NAWGK---GTEKNVASWETRSVKSSGGDI----WNEKVTKNLEEKEGTSV 1647
            ++          W K    TE   A+W +R  K+S  ++    W      N E +   + 
Sbjct: 1407 DVWGPKSVSEKVWKKKNSKTESAPAAWVSRDKKNSETELDASAWGFGDKVNKETETDAAA 1466

Query: 1648 WKNISWRPKGNSNEDAFSLPGTLDSESSKEPWVVGARDNTGNSWKNGPDA 1797
            W    ++    +   A+   G   SE+       G R+NT +  ++G  A
Sbjct: 1467 W-GAGYKMNKETESAAWGSWGEKRSETESGDAGWGFRNNTNSKVESGAGA 1515


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  445 bits (1144), Expect = e-122
 Identities = 242/525 (46%), Positives = 334/525 (63%), Gaps = 8/525 (1%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC CR+ +C+EKA Y V N L KVCLKD A EF IEY  +      SET +GL+GH
Sbjct: 434  LYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYENSETGTGLIGH 493

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            + L++ QL+    ++ E+  +CQ+ +  +  KK ++    KR+VLSV E C++       
Sbjct: 494  IRLNQGQLENLGISVLEVHERCQENISSFRXKK-KIGNLFKRIVLSVSEFCSFCHNSGSK 552

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
              + PCL+F++ DA+    D+ LE   H++A +I PILLDT++KGDPRV  A I WI PD
Sbjct: 553  CLNAPCLRFSWPDAS----DDHLERVSHILADMIXPILLDTVIKGDPRVSSANIAWISPD 608

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
              SW  +  K+ +GEL L+IVLEK AV+  GDAWR LMD+CLPV+HLIDT+RS PY I+Q
Sbjct: 609  TMSWIRSPSKSQRGELALDIVLEKEAVKXRGDAWRXLMDSCLPVIHLIDTTRSIPYAIKQ 668

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +EL+GISCAF+QAV RLS S+ MV+KGV+K+HL+L+ANS+TC GNLVGFN GG KAL R
Sbjct: 669  VQELIGISCAFEQAVXRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSR 728

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            S  VQ+PFT ATLFTP KCFE AAEKC  DSL+S+V+SCSWGK VA+GTG+ F++L +  
Sbjct: 729  SLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTR 788

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSGEATG-ACL-ADVDDIIEDQEMEVCLSPVANGHM-- 1248
                +    + VY FL ++  T + E  G +CL A++D++ ED++M + LSP  +     
Sbjct: 789  NVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLSPNRDSGSEM 848

Query: 1249 -TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGK---MAET 1416
             TFE+  E +Y    N N +  K   S  + AS    KSG       +  +G    + ++
Sbjct: 849  PTFEDRAEFDY----NENLDEGKPSGSAWEEASSGSVKSGGSWDMAGKTQNGAEEGVNQS 904

Query: 1417 NAWSSWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNV 1551
            ++WSSW     G+       N+      + S   + WG+  +K V
Sbjct: 905  DSWSSW-----GKKVDEPENNRQQSGSGEQSGSWSPWGRRWKKMV 944


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  444 bits (1142), Expect = e-122
 Identities = 250/612 (40%), Positives = 362/612 (59%), Gaps = 18/612 (2%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C   +C+E A Y+V + L+KV LKD A EF IEY++Q      SET  GLVGH
Sbjct: 887  LYLNDCDCGGSYCRENAAYSVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGH 946

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            ++LD+  L+    ++  +  KC + L  +++KK +++Q +K + LS  E C+   P    
Sbjct: 947  IYLDEMMLEELKISMAYVFDKCHERLKSFSQKK-KVNQSLKNIELSFSESCSSSHPAA-- 1003

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL F   +      D  L+ A+ V+A+ ICP+L  TI++GDPR+  A I+W+ PD
Sbjct: 1004 ----PCLTFWLKNY-----DSDLDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPD 1054

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
              +W  N  K+  GEL L+I+LEK AV+++GDAWR+++DACLPV+HLIDT RS PY I+Q
Sbjct: 1055 TNTWVRNPYKSSNGELALDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQ 1114

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLGISC FDQA++R++ S++MV+KGV++EHL+L+A+S+TC GNLVGFN GGYKAL R
Sbjct: 1115 IQELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSR 1174

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
               +QVPFT ATLFTP KCFE AAEKC TDSL+S+V+SCSWGK VA+GTG+ F ++WD N
Sbjct: 1175 QLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDAN 1234

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSG-EATGACLA-DVDDIIEDQEMEVCLSPVANG--HM 1248
            +   ++  G  VY FL M+    +G E T ACL  D+DD++E++ M++ +SP  N     
Sbjct: 1235 EIKSNEIEGMDVYSFLHMVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEA 1294

Query: 1249 TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGD-KSGNWQGW------ESRQDSGKM 1407
             FEEN EV       LN       ++  D +S+ G+ K+  W GW      E +    ++
Sbjct: 1295 VFEENPEV-------LNGST----SNGWDVSSNQGESKTNEWSGWASSNKAEIKDGRSEI 1343

Query: 1408 AETNAWSSWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVASWETRS---VK 1578
            A  N+W    +Q     +     +  +      S E +AWG    +    W + +   +K
Sbjct: 1344 APKNSWGKTVNQEDSSKSNPWSTSTIADQTKTKSNEWSAWGSNKSEIPVGWASSNKTEIK 1403

Query: 1579 SSGGDIWNEK---VTKNLEEKEGTSVWKNISWRPKGNSNEDAFSLPGTLDSESSKEPWVV 1749
                +   E     T N E+   ++ W   +     N+  + +S  G+  SE        
Sbjct: 1404 DGRSETAQENSWGKTVNQEDSSKSNAWNTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKA 1463

Query: 1750 GARDNTGNS-WK 1782
               D+ G+S WK
Sbjct: 1464 VQEDSWGSSKWK 1475


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  444 bits (1142), Expect = e-122
 Identities = 260/594 (43%), Positives = 357/594 (60%), Gaps = 30/594 (5%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C +++C+E+A Y V N LK+V LKD A EF IEY+K    P       GLVGH
Sbjct: 882  LYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKK----PEIISDDEGLVGH 937

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKG--QLSQFIKRVVLSVCECCNYKQPHD 354
            +HL+K  L+    ++ +IL KCQ+ L  + KKK   ++ QF K   LSV ECC+++Q   
Sbjct: 938  IHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSVSECCSFQQSCA 997

Query: 355  GDLCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIE 534
                + PCL F    A+    D  L+    V+A +I P+LL+TI+KGDPR++ A I+WI 
Sbjct: 998  DKRSNMPCLMFVLRGAS----DSYLDKLSGVLANMIYPVLLETIIKGDPRIYSANIIWIS 1053

Query: 535  PDATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGI 714
            PD T+W  N  K  KGEL L++VLEK+ V+++GDAWR ++D+CLPV HLIDT RS PY I
Sbjct: 1054 PDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAI 1113

Query: 715  QQNRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKAL 894
            +Q +ELLG+SCAF+QAV+RLS S+ MV+KGV+KEHL+L+ANS+TC G+LVGFN+GGYKAL
Sbjct: 1114 KQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKAL 1173

Query: 895  FRSFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWD 1074
             RS  VQVPFT ATLFTP KCFE AAEKC TD+L+SVV++CSWGK VA+GTG+ F +LW 
Sbjct: 1174 SRSLNVQVPFTEATLFTPRKCFEKAAEKCHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQ 1233

Query: 1075 KNQTAMHKDIGKGVYDFLEML-NPTLSGEATGACLADVDDIIEDQEMEVCLSP---VANG 1242
                  ++D G  VYDFL M+ + T   E+   CL +  D +ED E +  LSP   + + 
Sbjct: 1234 TENEEFNQDDGVDVYDFLHMVRSSTGIEESDTGCLGEEVDGLED-EFDWSLSPEHNLCSD 1292

Query: 1243 HMTFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGN-----WQGWESRQDSGKM 1407
               FE+  E +   +      N   E  CR  + D  +K G        GW +    GK 
Sbjct: 1293 KPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKS 1352

Query: 1408 AE---------TNAWSSWDSQ-HMGQITVGSWENKDS---QNCSDPSVELNAWGK--GTE 1542
            ++         +   S W ++   G+ +   WEN  S   ++ S+   E  +WGK  G +
Sbjct: 1353 SDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEA-SWGKSFGDK 1411

Query: 1543 KNVASWETRSVKSSGGDIWNEKVTKNLEEKEGTSVWKNIS-WRPK---GNSNED 1692
                S   ++    G +    K + + +E  G S  K +S W  K   G S+ED
Sbjct: 1412 PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSED 1465


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  444 bits (1142), Expect = e-122
 Identities = 255/609 (41%), Positives = 357/609 (58%), Gaps = 16/609 (2%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C +++C+E A Y V N LKKV LKD A EF IEY+K+       E  SGLVGH
Sbjct: 882  LYLNDCGCGRKYCREHAAYLVKNRLKKVSLKDTAVEFMIEYQKE-RAAGSMEIDSGLVGH 940

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKG----QLSQFIKRVVLSVCECCNYKQP 348
            VHL++  L+  N  + EIL KC++ +  + +KK      + +  KR +LS  ECC++ Q 
Sbjct: 941  VHLNEMLLRELNLGMSEILQKCEETINSFRRKKVGKKMNIGEIFKRTILSYSECCSFHQS 1000

Query: 349  HDGDLCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVW 528
               +    PCL F + D N ++    LE    ++A  ICP+LL T++KGDPR+  A I+W
Sbjct: 1001 SADNRSGSPCLMFFYQDFNNSE----LEAISQMLADFICPVLLKTVIKGDPRISSANIIW 1056

Query: 529  IEPDATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPY 708
            I  ++T+W  +  K+LKGEL L++VLEK+ V+++GDAWR+ +D CLPV+HLIDT RS PY
Sbjct: 1057 INSESTTWIRSPNKSLKGELALDVVLEKSVVKQSGDAWRIALDCCLPVLHLIDTRRSIPY 1116

Query: 709  GIQQNRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYK 888
             I+Q +ELLG+SCAFDQAV+RL++++ MV+KGV+KEHL+L+ANS+TC GN VGFN GGYK
Sbjct: 1117 AIKQVQELLGVSCAFDQAVQRLAKAVAMVAKGVLKEHLILLANSMTCAGNFVGFNPGGYK 1176

Query: 889  ALFRSFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQIL 1068
            AL R+  +QVPFT ATLFTP KCFE AAEKC  DSL+S+V+SCSWGK VA+GTG+ F+IL
Sbjct: 1177 ALSRALNIQVPFTEATLFTPKKCFERAAEKCHMDSLSSIVASCSWGKHVAVGTGSRFEIL 1236

Query: 1069 WDKNQTAMHKDIGKGVYDFLEMLNPTLSGEATGACL-ADVDDIIEDQEM-EVCLSPVANG 1242
            WD  +  +++  G  V++FL M+N     E T A L  ++DD++ D E  +V LSP  N 
Sbjct: 1237 WDTKEGGLNEVGGVDVFNFLHMVNAANGEELTTAALGTEIDDLVPDYENGDVSLSPEHNS 1296

Query: 1243 HM---TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGKMAE 1413
                  FE+  E   +F+   N   +   +S   + +  G K  +W   +     G  AE
Sbjct: 1297 SSDKPVFEDIVEFPDNFE---NVPGKSSWDSI--YTASTGGK--DWGAVKIGTQDGISAE 1349

Query: 1414 TNA--WSSWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVA--SWETRSVKS 1581
            T A   S+W  +   +     W    +     PS    AWG  T K  A  +W  ++ + 
Sbjct: 1350 TQADSTSAWGIKTPREDDTSPWGTAKTATEDAPS----AWGTKTVKEDAPSAWGIKTARE 1405

Query: 1582 SGGDIWNEKVTKNLEEKEGTSVWKNIS-WRPKGNSNEDAFSLPGTLD-SESSKEPW-VVG 1752
                 W    T   +    T+     S W     +  DA S  GT    E +   W    
Sbjct: 1406 DARSPWGTAKTATEDASSATAREDAPSPWGTAKTATGDALSAWGTKTLKEDAPSAWGTKT 1465

Query: 1753 ARDNTGNSW 1779
             R++  + W
Sbjct: 1466 VREDAPSPW 1474


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  442 bits (1137), Expect = e-121
 Identities = 247/584 (42%), Positives = 350/584 (59%), Gaps = 7/584 (1%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLN+C C +++C E A Y V + LKKV LKD A +F IEY +Q   P  S    GLVGH
Sbjct: 884  LYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQ---PTPSGLGPGLVGH 940

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            VHL++  LK  N ++ E+L +CQ+ +  + KKK +++  ++    S+ E C + Q +  +
Sbjct: 941  VHLNRMLLKELNIDMTEVLRRCQETMSSFKKKKKKIAHALR---FSISEHCAFHQWNGEE 997

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL F          D  LE   H++A ++ P+L +TI+KGDPR+  A ++WI PD
Sbjct: 998  SIDMPCLIFWH-----QTRDVHLERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPD 1052

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
            +TSW  N  +   GEL L++ LEK+AV++NGDAWR ++D CLPV+HLIDT RS PY I+Q
Sbjct: 1053 STSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQ 1112

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLGISCAFDQ ++RLS+S+ MVSKGV+ +HL+L+ANS+TCTGN++GFN+GGYKAL R
Sbjct: 1113 VQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSR 1172

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            +  +QVPFT ATLFTP KCFE AAEKC  DSL+S+V+SCSWGK VA+GTG+ F ILWD+ 
Sbjct: 1173 ALNIQVPFTEATLFTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQK 1232

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSGEATGACLA-DVDDI-IEDQEMEVCLSP---VANGH 1245
            +    +D    VY+FL M+    S E T ACL  +++DI +ED+  E+ LSP     +  
Sbjct: 1233 ELGCKQDDVVDVYNFLHMVRSGKSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEK 1292

Query: 1246 MTFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQD--SGKMAETN 1419
              FE++ E E+       +       S  + A   G  S     WES ++  +   ++ N
Sbjct: 1293 PVFEDSAEFEHCLDNYPGE-------SKWEKAPSLGAVSTGGGQWESNENGKATNSSDGN 1345

Query: 1420 AWSSWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVASWETRSVKSSGGDIW 1599
             WS W  +    +TV + +   S          +AW        +SW  ++  SS  + W
Sbjct: 1346 DWSGWGRKAEPDVTVTNAQENTSN---------SAW-----DTTSSWGNKATNSSNDNDW 1391

Query: 1600 NEKVTKNLEEKEGTSVWKNISWRPKGNSNEDAFSLPGTLDSESS 1731
            +   TK +E    TS+ K     PK +   D+ S  GT   + S
Sbjct: 1392 SNCSTKEVERDSFTSMEKT----PK-SGGWDSASTWGTKTKDDS 1430


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score =  438 bits (1127), Expect = e-120
 Identities = 254/627 (40%), Positives = 373/627 (59%), Gaps = 31/627 (4%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLN+C+C KRFC+E A Y V N LKKV LKD A EF +EYRKQ  +       S L GH
Sbjct: 879  LYLNECHCGKRFCQENAAYTVRNKLKKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGH 938

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKY-TKKKGQLSQFIKRVVLSVCECCNYKQPHDG 357
            +HLDKT L+ +N ++ +IL KC+DV+     KKK + +   KR  LSV ECC+++ P   
Sbjct: 939  IHLDKTLLQDWNISMQDILQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFQDPCGR 998

Query: 358  DLCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEP 537
                 PCL F++     +  D  LE  + V+   I P+LL+T++KGDPR+  A I+W   
Sbjct: 999  KDSDMPCLMFSY-----SATDPDLERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSS 1053

Query: 538  DATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQ 717
            D T+W  N   + +GE  L++ +EK+AV+++GDAWR+++DACL V+HLIDT RS PY I+
Sbjct: 1054 DMTTWIRNCHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDACLSVLHLIDTKRSIPYSIK 1113

Query: 718  QNRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALF 897
            Q +ELLG+SCAF+QAV+RLS S+RMVSKGV+KEH++L+AN++TC+GN++GFN+GGYKAL 
Sbjct: 1114 QVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALT 1173

Query: 898  RSFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDK 1077
            RS  ++ PFT ATL TP +CFE AAEKC TDSL++VV SCSWGK+V +GTG+ F++LW++
Sbjct: 1174 RSLNIKAPFTEATLITPRRCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQ 1233

Query: 1078 NQTAMHKDIGKGVYDFLEMLNPTLSGEATGACLADVDDIIEDQEMEVCLSP---VANGHM 1248
             +T +       VY FL+M+  T + +A  +  +   D+ E++  E   SP    A G  
Sbjct: 1234 KETGLDDKEETDVYSFLQMVRSTTNADAYVS--SPGFDVTEEEMAEWAESPERDSALGEP 1291

Query: 1249 TFEENHEVEYSFKKNLNQENRKIENSCRDFAS-DFGDKSGN-W-----QGWESRQDSGKM 1407
             FE++ E +     NL+ E +  E++    +S D G   G+ W      G E+  +S   
Sbjct: 1292 KFEDSAEFQ-----NLHDEGKPSESNWEKSSSWDNGCSGGSEWGVSKNTGGEANPESNWE 1346

Query: 1408 AETN-----AWSSWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVA----SW 1560
              TN     AWSSW+++            KD+Q  S     + AWG  T+ + A    +W
Sbjct: 1347 KTTNVEKEDAWSSWNTK------------KDAQESSKSDSGV-AWGLKTKDDDADTTPNW 1393

Query: 1561 ETRSVKSSG---------GDIWNEK--VTKNLEEKEGTSVWKNISWRPKGNSNEDAFSLP 1707
            ETR  ++            D+W  K    K+ ++K G +     +W   G+++   +   
Sbjct: 1394 ETRPAQTDSIVPENNEPTSDVWGHKSGSDKSWDKKNGGTESAPAAW---GSTDAAVWGSS 1450

Query: 1708 GTLDSESSKEPWVVGARDNTGNSWKNG 1788
               +SE+  +    G+RD   +   +G
Sbjct: 1451 DKKNSETESDAAAWGSRDKKNSEVGSG 1477


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  437 bits (1124), Expect = e-120
 Identities = 259/595 (43%), Positives = 354/595 (59%), Gaps = 31/595 (5%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C +++C+E+A Y V N LK+V LKD A EF IEY+K    P       GLVGH
Sbjct: 883  LYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKK----PEIISDDEGLVGH 938

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKG--QLSQFIKRVVLSVCECCNYKQPHD 354
            +HL+K  L+    ++ +IL KCQ+ L  + KKK   ++ QF K   LS+ ECC+++Q   
Sbjct: 939  IHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCA 998

Query: 355  GDLCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIE 534
                + PCL F    A+    D  L+    V+A +I P+LL+TI+KGDPR+  A I+WI 
Sbjct: 999  DKRSNMPCLMFVLRGAS----DSYLDKLSGVLANMIYPVLLETIIKGDPRICSANIIWIS 1054

Query: 535  PDATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGI 714
            PD T+W  N  K  KGEL L++VLEK+ V+++GDAWR ++D+CLPV HLIDT RS PY I
Sbjct: 1055 PDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAI 1114

Query: 715  QQNRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKAL 894
            +Q +ELLG+SCAF+QAV+RLS S+ MV+KGV+KEHL+L+ANS+TC G+LVGFN+GGYKAL
Sbjct: 1115 KQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKAL 1174

Query: 895  FRSFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWD 1074
             RS  VQVPFT ATLF P KCFE AAEK  TD+L+SVV++CSWGK VA+GTG+ F +LW 
Sbjct: 1175 SRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQ 1234

Query: 1075 KNQTAMHKDIGKGVYDFLEML-NPTLSGEATGACLADVDDIIEDQEMEVCLSP---VANG 1242
                  ++D G  VYDFL M+ + T   E    CL +  D +ED E +  LSP   + + 
Sbjct: 1235 TENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLED-EFDWSLSPEHNLCSD 1293

Query: 1243 HMTFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGN-----WQGWESRQDSGKM 1407
               FE+  E +   +     EN   E  CR  + D  +K G        GW +    GK 
Sbjct: 1294 KPIFEDLVEDQSWLENKQENENWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKS 1353

Query: 1408 AE---------TNAWSSWDSQ-HMGQITVGSWENKDS---QNCSDPSVELNAWGKG---T 1539
            ++         +   S W ++   G+ +   WEN  S   ++ S+   E  +WGK     
Sbjct: 1354 SDDKLEKAGSPSRKPSGWGTEASWGESSSDKWENVGSPAAKSFSEWGTEA-SWGKSFGDK 1412

Query: 1540 EKNVASWETRSVKSSGGDIWNEKVTKNLEEKEGTSVWKNIS-WRPK---GNSNED 1692
             +NV S   ++    G +    K   + +E  G S  K +S W  K   G S+ED
Sbjct: 1413 PENVRSPAAKTSSGWGSEASWGKSPGDRQENVGRSASKPLSGWGAKASWGKSSED 1467


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  431 bits (1109), Expect = e-118
 Identities = 255/621 (41%), Positives = 341/621 (54%), Gaps = 27/621 (4%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C +++C+E A   V N LKKV L+D A E  IEY++    P   E  +GLVGH
Sbjct: 682  LYLNDCCCGRKYCQENASCLVKNHLKKVSLRDAAIELAIEYKRPKLEPESCEIDAGLVGH 741

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            +HL+   LK     + +IL KC++ +    KKK +     KR++LSV +CC +    D  
Sbjct: 742  IHLNSGLLKASGIGMHDILQKCEEQVNLLRKKK-KYGYHFKRILLSVSDCCFFNHS-DSK 799

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL+F + D      D  LE   H+MA +ICP+LLDTI+KGDPR+    I+WI P 
Sbjct: 800  WTDMPCLKFFWQD----MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPG 855

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
             T+W  + C + KGEL +E+ LEK AVR  GDAWR+++D CLPV HLIDT RS PY I+Q
Sbjct: 856  TTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQ 915

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             ++L GISCAFDQAV+RLS S+ MV+KGV+KEHLLL+A+S+TC GNLVGFNT G KAL R
Sbjct: 916  IQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLLLLASSMTCAGNLVGFNTSGIKALCR 975

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            +  VQVPFT ATL+TP KCFE A+EKC  D+L S+V SCSWGK+V+IGTGA F +LW+  
Sbjct: 976  ALNVQVPFTEATLYTPRKCFERASEKCHVDTLASIVGSCSWGKRVSIGTGAKFDLLWETK 1035

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSGEA-TGACLADVDDIIEDQEMEVCLSPVANGHMTFE 1257
            +  M  D    VY+FL +++     E  +G    D++   +D  ME  LSP       FE
Sbjct: 1036 EIEM-ADKPTDVYNFLHLVSSANEEEVDSGGLGEDIESFEKDVYMEPALSPEQENKAVFE 1094

Query: 1258 ENHEVEYSFKKNLNQENRKIENSCRDFASD------------FGDKSGNWQGWESRQDSG 1401
            E  E+        +      E+S   F S              G   G W  W S++D  
Sbjct: 1095 ETLEIGVD-----SDITGADESSWDAFPSSGTGWNANKIDTGSGSAEGGWSSWGSKKDQA 1149

Query: 1402 K---MAETNAWSSWDSQHMGQ----ITVGSWENKDSQNCSDPSVELNAWG---KGTEKNV 1551
                 ++T  WSS  S+   Q       G W+   S   S+       WG   K T    
Sbjct: 1150 NPEDSSKTGGWSSGGSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSPVWGQPVKATNDIS 1209

Query: 1552 ASWETRSVKSSGGDIWNEKVTKNLEEKEGTSV---W-KNISWRPKGNSNEDAFSLPGTLD 1719
               +  S  + GG   N  + K+L ++E +S    W  + SW   G+  +D  S      
Sbjct: 1210 IENDHGSGSAEGGGWANSGMKKDLSKQENSSTAGGWDASKSW--SGSKPKDPSS------ 1261

Query: 1720 SESSKEPWVVGARDNTGNSWK 1782
                   W  G + +  N WK
Sbjct: 1262 ------AWGAGKKTDDNNGWK 1276


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  429 bits (1103), Expect = e-117
 Identities = 254/611 (41%), Positives = 367/611 (60%), Gaps = 16/611 (2%)
 Frame = +1

Query: 1    LYLNDCYCRKRFCKEKAVYAVFNCLKKVCLKDWAREFYIEYRKQIDLPNKSETFSGLVGH 180
            LYLNDC C + +C+E+A Y V N L+KV LKD A+ F IEY+ Q  +P    + +GLVGH
Sbjct: 889  LYLNDCGCGRNYCQERAAYLVKNHLEKVSLKDIAKCFMIEYKSQ-QIPESFGSDAGLVGH 947

Query: 181  VHLDKTQLKLFNQNIDEILGKCQDVLFKYTKKKGQLSQFIKRVVLSVCECCNYKQPHDGD 360
            VHLDK +L+  N     IL KCQ+ +  + KKK ++    K+ +L V E C+++Q  D  
Sbjct: 948  VHLDKRKLQDLNITAQVILEKCQETVNTFRKKK-KVGNLFKKTILLVSESCSFQQCIDES 1006

Query: 361  LCHFPCLQFTFVDANTAQNDESLECAIHVMAKVICPILLDTIVKGDPRVFEAKIVWIEPD 540
                PCL F +  A+    D  LE   +++A +ICP+LL+TI+KGD R+  A I+W  P+
Sbjct: 1007 ----PCLMFFWQGAD----DVHLERTSNILADMICPVLLETIIKGDHRISCANIIWATPE 1058

Query: 541  ATSWAANSCKTLKGELGLEIVLEKAAVRENGDAWRMLMDACLPVMHLIDTSRSCPYGIQQ 720
              +W  N  +T KGEL L+IVLEK+ V+++GDAWR+++D+CLPV+HLI+T+RS PY I+Q
Sbjct: 1059 TNTWIRNPSRTQKGELALDIVLEKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQ 1118

Query: 721  NRELLGISCAFDQAVKRLSRSIRMVSKGVMKEHLLLVANSITCTGNLVGFNTGGYKALFR 900
             +ELLG+SCAFD AV+RLS+S+ MV+KGV+KEHL+L+ NS+TC G+L+GF TGGYK L R
Sbjct: 1119 VQELLGVSCAFDTAVQRLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSR 1178

Query: 901  SFKVQVPFTAATLFTPMKCFETAAEKCQTDSLTSVVSSCSWGKKVAIGTGAPFQILWDKN 1080
            S  +QVPFT ATLFTP KCFE AAEKC TDSL+S+V+SC+WGK V +GTG+ F +LWD  
Sbjct: 1179 SLDIQVPFTEATLFTPRKCFEKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTK 1238

Query: 1081 QTAMHKDIGKGVYDFLEMLNPTLSG-EATGACL-ADVDDI-IEDQEMEVCLSPVANGHM- 1248
            +  ++ +    VY FL M+  T  G E+  ACL A+VDD+ +ED++    LSP  N    
Sbjct: 1239 EACLNPEGSMDVYSFLNMVRSTAGGEESVTACLGAEVDDLMLEDEDWN--LSPEHNSSSD 1296

Query: 1249 --TFEENHEVEYSFKKNLNQENRKIENSCRDFASDFGDKSGNWQGWESRQDSGKMAETNA 1422
              TFE++ E    F+  L   N+  E++    +S   D+S +   W+  ++ G + E   
Sbjct: 1297 KPTFEDSAE----FQDFLG--NQPAESNWEKISS-LKDRSRSSGNWDVDKNDGAVKE-KP 1348

Query: 1423 WS-SWDSQHMGQITVGSWENKDSQNCSDPSVELNAWGKGTEKNVA------SWETRSVKS 1581
            WS   ++     +    W+   ++  +      N+W   +E NVA       W T+  + 
Sbjct: 1349 WSLGMNTAEANDVASSGWDTAAARTTN------NSW--NSENNVAQSNSFSGWATKKPEP 1400

Query: 1582 SGGDIWNEKVTKNLEEKEGTSVW-KNISWRPKGNSNEDAFSLPGTLDSESSKEPW--VVG 1752
              G       TK  EE   ++ W    +W  K   N+ A       ++ +SK  W  V  
Sbjct: 1401 HNG-----FATKVQEEPTTSNDWDAGAAWGRKDRDNKFA-------ETNASKSWWGKVTD 1448

Query: 1753 ARDNTGNSWKN 1785
              ++  N  KN
Sbjct: 1449 GDESGQNKSKN 1459