BLASTX nr result

ID: Zingiber24_contig00026696 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00026696
         (220 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD54295.1| hypothetical protein [Oryza sativa Japonica Grou...    58   1e-06
ref|NP_001066174.1| Os12g0152200 [Oryza sativa Japonica Group] g...    52   4e-06

>dbj|BAD54295.1| hypothetical protein [Oryza sativa Japonica Group]
           gi|222635713|gb|EEE65845.1| hypothetical protein
           OsJ_21616 [Oryza sativa Japonica Group]
          Length = 102

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 29/51 (56%), Positives = 37/51 (72%)
 Frame = +3

Query: 63  RGQSPWLVLYHNPKVDPSAITFYALDERREYTIPVPDPPISDRLFLGSAHG 215
           R Q+P L LY       SA+  Y+L ERREYTIP+PDPPIS+R ++GS+HG
Sbjct: 53  RRQTPCL-LYCTEAAGASAVGMYSLLERREYTIPLPDPPISNRTWIGSSHG 102


>ref|NP_001066174.1| Os12g0152200 [Oryza sativa Japonica Group]
           gi|77553033|gb|ABA95829.1| F-box domain containing
           protein [Oryza sativa Japonica Group]
           gi|77553045|gb|ABA95841.1| F-box domain containing
           protein [Oryza sativa Japonica Group]
           gi|113648681|dbj|BAF29193.1| Os12g0152200 [Oryza sativa
           Japonica Group] gi|125535791|gb|EAY82279.1| hypothetical
           protein OsI_37489 [Oryza sativa Indica Group]
           gi|125535792|gb|EAY82280.1| hypothetical protein
           OsI_37490 [Oryza sativa Indica Group]
           gi|125578521|gb|EAZ19667.1| hypothetical protein
           OsJ_35243 [Oryza sativa Japonica Group]
           gi|125578531|gb|EAZ19677.1| hypothetical protein
           OsJ_35253 [Oryza sativa Japonica Group]
          Length = 419

 Score = 52.4 bits (124), Expect(2) = 4e-06
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +3

Query: 63  RGQSPWLVLYHNPKVDPSAITFYAL-DERREYTIPVPDPPISDRLFLGSAHGW 218
           R Q+P L LY      P A   Y+L D+   YT+P+PDPPI++R  +GS+HGW
Sbjct: 54  RAQTPCL-LYTTAAAGPRAAVLYSLADKTTSYTVPLPDPPIAERHIVGSSHGW 105



 Score = 23.9 bits (50), Expect(2) = 4e-06
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 1   AAVCLPWSAAVRDLSTDALSSAGRAP 78
           AAVC  W A  RD+    L S  + P
Sbjct: 33  AAVCKLWRATARDIRRLGLYSRAQTP 58


Top