BLASTX nr result
ID: Zingiber24_contig00026486
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00026486
(483 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMS45248.1| hypothetical protein TRIUR3_33408 [Triticum urartu] 61 2e-07
ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group] g... 60 2e-07
gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indi... 60 2e-07
ref|XP_006850605.1| hypothetical protein AMTR_s00034p00130400 [A... 60 4e-07
gb|AAS55478.1| Tha8 [Zea mays] 57 2e-06
ref|XP_003567318.1| PREDICTED: uncharacterized protein LOC100843... 55 7e-06
ref|XP_003565206.1| PREDICTED: pentatricopeptide repeat-containi... 55 7e-06
ref|NP_001105250.1| thylakoid assembly8 [Zea mays] gi|45183621|g... 55 7e-06
>gb|EMS45248.1| hypothetical protein TRIUR3_33408 [Triticum urartu]
Length = 114
Score = 60.8 bits (146), Expect = 2e-07
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 RLVRALTAAGRGKVVANVYREA-KRCAFEPDEYLFKFMIRGLKRLGQEAAAAEVERDYQL 183
RLVRAL A GR + VY A +R E DEY+++ M RG+KRLG EA AAEV+ D+
Sbjct: 26 RLVRALVAKGRARAAWRVYEAAVRREGCEVDEYMYRVMARGMKRLGLEAEAAEVQADFAE 85
Query: 184 W 186
W
Sbjct: 86 W 86
>ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|9757668|dbj|BAB08187.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|15528644|dbj|BAB64665.1| Tha8 -like [Oryza sativa
Japonica Group] gi|113531606|dbj|BAF03989.1|
Os01g0158100 [Oryza sativa Japonica Group]
gi|125569105|gb|EAZ10620.1| hypothetical protein
OsJ_00452 [Oryza sativa Japonica Group]
Length = 267
Score = 60.5 bits (145), Expect = 2e-07
Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 RLVRALTAAGRGKVVANVYREAKRCA-FEPDEYLFKFMIRGLKRLGQEAAAAEVERDYQL 183
RLVRAL A GR + VY A R E DEY+++ M RG+KRLG EA AAEVE D +
Sbjct: 171 RLVRALVAKGRARAAWRVYEAAVRMGGCEVDEYMYRVMARGMKRLGFEAEAAEVEADLRE 230
Query: 184 W 186
W
Sbjct: 231 W 231
>gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indica Group]
Length = 257
Score = 60.5 bits (145), Expect = 2e-07
Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 RLVRALTAAGRGKVVANVYREAKRCA-FEPDEYLFKFMIRGLKRLGQEAAAAEVERDYQL 183
RLVRAL A GR + VY A R E DEY+++ M RG+KRLG EA AAEVE D +
Sbjct: 171 RLVRALVAKGRARAAWRVYEAAVRMGGCEVDEYMYRVMARGMKRLGFEAEAAEVEADLRE 230
Query: 184 W 186
W
Sbjct: 231 W 231
>ref|XP_006850605.1| hypothetical protein AMTR_s00034p00130400 [Amborella trichopoda]
gi|548854274|gb|ERN12186.1| hypothetical protein
AMTR_s00034p00130400 [Amborella trichopoda]
Length = 250
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +1
Query: 1 VPRLVRALTAAGRGKVVANVYREAKRCAFEPDEYLFKFMIRGLKRLGQEAAAAEVERDYQ 180
+ RLVRAL AG + ++Y K F PD++LF+ +IRGLKRLG++A AA+V D++
Sbjct: 173 IARLVRALIGAGNAEGAVSIYEMTKGSGFLPDDFLFRVLIRGLKRLGKQAHAAKVMDDFR 232
>gb|AAS55478.1| Tha8 [Zea mays]
Length = 263
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 RLVRALTAAGRGKVVANVYREA-KRCAFEPDEYLFKFMIRGLKRLGQEAAAAEVERDYQL 183
RL+RAL A GRG+ VY A ++ + DEY+++ M RG+KRLG AAEVE D+
Sbjct: 175 RLLRALVAKGRGRAAWRVYEAAVRKGGLDVDEYVYRVMARGMKRLGFHEEAAEVEADFAE 234
Query: 184 W 186
W
Sbjct: 235 W 235
>ref|XP_003567318.1| PREDICTED: uncharacterized protein LOC100843557 [Brachypodium
distachyon]
Length = 143
Score = 55.5 bits (132), Expect = 7e-06
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 7 RLVRALTAAGRGKVVANVYREA-KRCAFEPDEYLFKFMIRGLKRLGQEAAAAEVERDYQL 183
RLVRAL A GR + VY A ++ E DEY+++ M +G+KRLG + AAEVE D
Sbjct: 59 RLVRALVAKGRARAAWRVYEAAVRKGGCEVDEYMYRVMAKGMKRLGLDEEAAEVEADLAD 118
Query: 184 WLECGCFPVETLP 222
W E P E P
Sbjct: 119 W-EARHLPDEMRP 130
>ref|XP_003565206.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
gi|554793804|pdb|4ME2|A Chain A, Crystal Structure Of
Tha8 Protein From Brachypodium Distachyon
gi|554793836|pdb|4N2Q|A Chain A, Crystal Structure Of
Tha8 In Complex With Zm4 Rna gi|554793838|pdb|4N2S|A
Chain A, Crystal Structure Of Tha8 In Complex With
Zm1a-6 Rna
Length = 257
Score = 55.5 bits (132), Expect = 7e-06
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 7 RLVRALTAAGRGKVVANVYREA-KRCAFEPDEYLFKFMIRGLKRLGQEAAAAEVERDYQL 183
RLVRAL A GR + VY A ++ E DEY+++ M +G+KRLG + AAEVE D
Sbjct: 173 RLVRALVAKGRARAAWRVYEAAVRKGGCEVDEYMYRVMAKGMKRLGLDEEAAEVEADLAD 232
Query: 184 WLECGCFPVETLP 222
W E P E P
Sbjct: 233 W-EARHLPDEMRP 244
>ref|NP_001105250.1| thylakoid assembly8 [Zea mays] gi|45183621|gb|AAS55479.1| Tha8 [Zea
mays] gi|413947428|gb|AFW80077.1| thylakoid assembly8
[Zea mays]
Length = 263
Score = 55.5 bits (132), Expect = 7e-06
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 RLVRALTAAGRGKVVANVYREA-KRCAFEPDEYLFKFMIRGLKRLGQEAAAAEVERDYQL 183
RL+RAL A GRG+ VY A ++ D Y+++ M RG+KRLG + AAEVE D+
Sbjct: 175 RLLRALVAKGRGRAAWRVYEAAVRKGGLNVDAYVYRVMARGMKRLGFQEEAAEVEEDFAE 234
Query: 184 W 186
W
Sbjct: 235 W 235