BLASTX nr result
ID: Zingiber24_contig00026059
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00026059
(267 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY18724.1| Pumilio 4 isoform 3 [Theobroma cacao] 75 9e-12
gb|EOY18723.1| Pumilio 4 isoform 2 [Theobroma cacao] 75 9e-12
gb|EOY18722.1| Pumilio 4 isoform 1 [Theobroma cacao] 75 9e-12
ref|XP_006436466.1| hypothetical protein CICLE_v10030594mg [Citr... 70 4e-10
gb|EXC32919.1| Pumilio-4-like protein [Morus notabilis] 69 9e-10
gb|EMJ21481.1| hypothetical protein PRUPE_ppa000731mg [Prunus pe... 67 2e-09
ref|XP_002530940.1| pumilio, putative [Ricinus communis] gi|2235... 67 3e-09
ref|XP_002311080.2| hypothetical protein POPTR_0008s03630g [Popu... 66 6e-09
ref|XP_002316382.2| pumilio/Puf RNA-binding domain-containing fa... 64 2e-08
ref|XP_006606263.1| PREDICTED: pumilio homolog 4-like isoform X3... 63 5e-08
ref|XP_006606261.1| PREDICTED: pumilio homolog 4-like isoform X1... 63 5e-08
ref|XP_006589409.1| PREDICTED: pumilio homolog 4-like isoform X2... 62 8e-08
ref|XP_006589408.1| PREDICTED: pumilio homolog 4-like isoform X1... 62 8e-08
gb|ESW15729.1| hypothetical protein PHAVU_007G097100g [Phaseolus... 62 8e-08
ref|XP_002273503.1| PREDICTED: pumilio homolog 4 [Vitis vinifera... 62 8e-08
ref|XP_006407578.1| hypothetical protein EUTSA_v10019985mg [Eutr... 60 2e-07
ref|XP_002278108.2| PREDICTED: pumilio homolog 1-like [Vitis vin... 60 3e-07
ref|XP_002299859.2| pumilio/Puf RNA-binding domain-containing fa... 59 5e-07
ref|XP_006299607.1| hypothetical protein CARUB_v10015786mg [Caps... 59 5e-07
ref|XP_004496247.1| PREDICTED: pumilio homolog 4-like isoform X5... 59 9e-07
>gb|EOY18724.1| Pumilio 4 isoform 3 [Theobroma cacao]
Length = 767
Score = 75.1 bits (183), Expect = 9e-12
Identities = 45/104 (43%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL----EMP 98
+PPP +SKEDWRV QRF GSS G IGD R + + + G SSSLFS+ P L E
Sbjct: 116 LPPPLLSKEDWRVAQRFQASGSSLGNIGD--WRKKKLVDGGDSSSLFSMQPGLSVQQEQN 173
Query: 97 DL------------QKLPGELLEQNSNEFIRMPDVGLGTRRKSF 2
DL +K+ E L++ S+ + + GLG RRKSF
Sbjct: 174 DLMELRNTNARNTSRKMSAEWLDRGSDGLVGLSGTGLGARRKSF 217
>gb|EOY18723.1| Pumilio 4 isoform 2 [Theobroma cacao]
Length = 907
Score = 75.1 bits (183), Expect = 9e-12
Identities = 45/104 (43%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL----EMP 98
+PPP +SKEDWRV QRF GSS G IGD R + + + G SSSLFS+ P L E
Sbjct: 116 LPPPLLSKEDWRVAQRFQASGSSLGNIGD--WRKKKLVDGGDSSSLFSMQPGLSVQQEQN 173
Query: 97 DL------------QKLPGELLEQNSNEFIRMPDVGLGTRRKSF 2
DL +K+ E L++ S+ + + GLG RRKSF
Sbjct: 174 DLMELRNTNARNTSRKMSAEWLDRGSDGLVGLSGTGLGARRKSF 217
>gb|EOY18722.1| Pumilio 4 isoform 1 [Theobroma cacao]
Length = 1026
Score = 75.1 bits (183), Expect = 9e-12
Identities = 45/104 (43%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL----EMP 98
+PPP +SKEDWRV QRF GSS G IGD R + + + G SSSLFS+ P L E
Sbjct: 116 LPPPLLSKEDWRVAQRFQASGSSLGNIGD--WRKKKLVDGGDSSSLFSMQPGLSVQQEQN 173
Query: 97 DL------------QKLPGELLEQNSNEFIRMPDVGLGTRRKSF 2
DL +K+ E L++ S+ + + GLG RRKSF
Sbjct: 174 DLMELRNTNARNTSRKMSAEWLDRGSDGLVGLSGTGLGARRKSF 217
>ref|XP_006436466.1| hypothetical protein CICLE_v10030594mg [Citrus clementina]
gi|567887890|ref|XP_006436467.1| hypothetical protein
CICLE_v10030594mg [Citrus clementina]
gi|568864458|ref|XP_006485615.1| PREDICTED: pumilio
homolog 4-like isoform X1 [Citrus sinensis]
gi|568864460|ref|XP_006485616.1| PREDICTED: pumilio
homolog 4-like isoform X2 [Citrus sinensis]
gi|568864462|ref|XP_006485617.1| PREDICTED: pumilio
homolog 4-like isoform X3 [Citrus sinensis]
gi|557538662|gb|ESR49706.1| hypothetical protein
CICLE_v10030594mg [Citrus clementina]
gi|557538663|gb|ESR49707.1| hypothetical protein
CICLE_v10030594mg [Citrus clementina]
Length = 1029
Score = 69.7 bits (169), Expect = 4e-10
Identities = 45/104 (43%), Positives = 57/104 (54%), Gaps = 16/104 (15%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSLEM----P 98
+PPP +SKEDWRV QRF GSS G I D R + + N G SSLFS+ P + +
Sbjct: 127 LPPPLVSKEDWRVAQRFQGGGSSLGDIAD--WRKKGV-NGGDRSSLFSMQPGISVLQAEN 183
Query: 97 DLQKL------------PGELLEQNSNEFIRMPDVGLGTRRKSF 2
DL +L E LE+ S+ I +P GLG+RRKSF
Sbjct: 184 DLMELRNAARRNLSRDASAEWLERGSDRLIGVPAAGLGSRRKSF 227
>gb|EXC32919.1| Pumilio-4-like protein [Morus notabilis]
Length = 989
Score = 68.6 bits (166), Expect = 9e-10
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL------- 107
+PPP +SKEDWR+ QRF GSSFG IGD R + I+ DG+SSSLFS+ P L
Sbjct: 102 LPPPLLSKEDWRIAQRFQAGGSSFGEIGD--WRKKGIE-DGESSSLFSMQPGLSVQQAED 158
Query: 106 EMPDLQKLPGE---------LLEQNSNEFIRMPDVGLGTRRKSF 2
++ +L+ G ++ N I + GLG RRKSF
Sbjct: 159 DLMELRNASGSNHSWQTSSGWTDRGLNSSIGLSSNGLGARRKSF 202
>gb|EMJ21481.1| hypothetical protein PRUPE_ppa000731mg [Prunus persica]
Length = 1021
Score = 67.4 bits (163), Expect = 2e-09
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSLEMP---- 98
+PPP +S+EDWR+ QRF GSSF G+GD R + + +DG S SLFS L +
Sbjct: 118 LPPPLLSREDWRIAQRFQVGGSSFEGVGD--WRKKKLVDDGDSLSLFSAQLGLSVQKAEN 175
Query: 97 DLQKL------------PGELLEQNSNEFIRMPDVGLGTRRKSF 2
DL +L E L++ S+ I + GLG RRKSF
Sbjct: 176 DLMELRNGNGSNLPKQTSSEWLDRGSDGLIGLSTSGLGARRKSF 219
>ref|XP_002530940.1| pumilio, putative [Ricinus communis] gi|223529499|gb|EEF31455.1|
pumilio, putative [Ricinus communis]
Length = 1024
Score = 66.6 bits (161), Expect = 3e-09
Identities = 40/103 (38%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSLEMPDL-- 92
+PPP +SKEDWRV QRF G G IGD R + ++G SSLFS+ P L L
Sbjct: 120 LPPPLLSKEDWRVAQRFQASGPLLGDIGDL--RKKKFVDEGDGSSLFSLQPRLSAQKLDN 177
Query: 91 -------------QKLPGELLEQNSNEFIRMPDVGLGTRRKSF 2
+ P E L++ S + + GLG RRKSF
Sbjct: 178 DLMGIRNVRNNFSMQNPAEWLDRGSGDSNGLQSAGLGARRKSF 220
>ref|XP_002311080.2| hypothetical protein POPTR_0008s03630g [Populus trichocarpa]
gi|566182194|ref|XP_006379542.1| pumilio/Puf RNA-binding
domain-containing family protein [Populus trichocarpa]
gi|566182196|ref|XP_002311079.2| hypothetical protein
POPTR_0008s03630g [Populus trichocarpa]
gi|550332361|gb|EEE88447.2| hypothetical protein
POPTR_0008s03630g [Populus trichocarpa]
gi|550332362|gb|ERP57339.1| pumilio/Puf RNA-binding
domain-containing family protein [Populus trichocarpa]
gi|550332363|gb|EEE88446.2| hypothetical protein
POPTR_0008s03630g [Populus trichocarpa]
Length = 1031
Score = 65.9 bits (159), Expect = 6e-09
Identities = 45/106 (42%), Positives = 56/106 (52%), Gaps = 18/106 (16%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSLEMPDLQK 86
+PPP +SKEDWRV QRF GS FGGIG+ R + D SSSLFS+ P L + K
Sbjct: 122 LPPPLLSKEDWRVAQRFQSSGSMFGGIGNL--RKNKVVEDSDSSSLFSIQPGL---SVHK 176
Query: 85 LPGELLEQNS---NEFIR----------MPDVG-----LGTRRKSF 2
+ +L+E ++ N IR D G LG RRKSF
Sbjct: 177 VDIDLIESSNSSRNNVIRNASSKWLDRGSSDPGLQRSRLGARRKSF 222
>ref|XP_002316382.2| pumilio/Puf RNA-binding domain-containing family protein [Populus
trichocarpa] gi|550330425|gb|EEF02553.2| pumilio/Puf
RNA-binding domain-containing family protein [Populus
trichocarpa]
Length = 1001
Score = 64.3 bits (155), Expect = 2e-08
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSLEMPDLQK 86
+PPP +SKEDW V QRF GSSFGGIGD RN + ++ SSLFS+ P L + K
Sbjct: 103 LPPPLLSKEDWLVAQRFQSSGSSFGGIGDL--RNNKVVDNSDRSSLFSMQPGL---SVHK 157
Query: 85 LPGELLE-QNSN 53
+ +L E +NSN
Sbjct: 158 VDNDLTELRNSN 169
>ref|XP_006606263.1| PREDICTED: pumilio homolog 4-like isoform X3 [Glycine max]
Length = 982
Score = 62.8 bits (151), Expect = 5e-08
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 17/105 (16%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRG-SSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL------ 107
+PPP +SKEDWRV QRFH G SS G GD + + +G SSSLFS+ P
Sbjct: 118 LPPPLLSKEDWRVAQRFHGGGSSSIEGFGD---WRKNVATNGDSSSLFSMQPGFSVQQAE 174
Query: 106 -EMPDLQKLPG---------ELLEQNSNEFIRMPDVGLGTRRKSF 2
++ +L+K G ++L+++ + RM GLG RR F
Sbjct: 175 NDLMELRKSSGWNVSRQGSSQMLDRHMDGLTRMSGAGLGGRRTGF 219
>ref|XP_006606261.1| PREDICTED: pumilio homolog 4-like isoform X1 [Glycine max]
gi|571568627|ref|XP_006606262.1| PREDICTED: pumilio
homolog 4-like isoform X2 [Glycine max]
Length = 983
Score = 62.8 bits (151), Expect = 5e-08
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 17/105 (16%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRG-SSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL------ 107
+PPP +SKEDWRV QRFH G SS G GD + + +G SSSLFS+ P
Sbjct: 118 LPPPLLSKEDWRVAQRFHGGGSSSIEGFGD---WRKNVATNGDSSSLFSMQPGFSVQQAE 174
Query: 106 -EMPDLQKLPG---------ELLEQNSNEFIRMPDVGLGTRRKSF 2
++ +L+K G ++L+++ + RM GLG RR F
Sbjct: 175 NDLMELRKSSGWNVSRQGSSQMLDRHMDGLTRMSGAGLGGRRTGF 219
>ref|XP_006589409.1| PREDICTED: pumilio homolog 4-like isoform X2 [Glycine max]
Length = 983
Score = 62.0 bits (149), Expect = 8e-08
Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 17/105 (16%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRG-SSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL------ 107
+PPP +SKEDWRV QRFH G SS G GD + + +G SSSLFS+ P
Sbjct: 119 LPPPLLSKEDWRVAQRFHGGGSSSIEGFGD---WRKNVAPNGDSSSLFSMQPGFSVQQVE 175
Query: 106 -EMPDLQKLPG---------ELLEQNSNEFIRMPDVGLGTRRKSF 2
++ +L K G ++L+++ RM GLG RR S+
Sbjct: 176 NDLMELSKASGWNVSRQGSSQMLDRHMGGLTRMSGAGLGGRRTSY 220
>ref|XP_006589408.1| PREDICTED: pumilio homolog 4-like isoform X1 [Glycine max]
Length = 984
Score = 62.0 bits (149), Expect = 8e-08
Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 17/105 (16%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRG-SSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL------ 107
+PPP +SKEDWRV QRFH G SS G GD + + +G SSSLFS+ P
Sbjct: 119 LPPPLLSKEDWRVAQRFHGGGSSSIEGFGD---WRKNVAPNGDSSSLFSMQPGFSVQQVE 175
Query: 106 -EMPDLQKLPG---------ELLEQNSNEFIRMPDVGLGTRRKSF 2
++ +L K G ++L+++ RM GLG RR S+
Sbjct: 176 NDLMELSKASGWNVSRQGSSQMLDRHMGGLTRMSGAGLGGRRTSY 220
>gb|ESW15729.1| hypothetical protein PHAVU_007G097100g [Phaseolus vulgaris]
Length = 928
Score = 62.0 bits (149), Expect = 8e-08
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 17/105 (16%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRG-SSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL------ 107
+PPP +SKEDWRV QRFH G SS G GD + + +G SSSLFS+ P
Sbjct: 116 LPPPLLSKEDWRVAQRFHGGGSSSIEGFGD---WRKNVATNGDSSSLFSMQPGFSVQQAE 172
Query: 106 -EMPDLQKLPG---------ELLEQNSNEFIRMPDVGLGTRRKSF 2
++ +L+K G ++L+++ + RM GLG RR +
Sbjct: 173 NDLMELRKTSGWNVSRQPSSQMLDRHMDGLTRMSGAGLGGRRMGY 217
>ref|XP_002273503.1| PREDICTED: pumilio homolog 4 [Vitis vinifera]
gi|296085990|emb|CBI31431.3| unnamed protein product
[Vitis vinifera]
Length = 1026
Score = 62.0 bits (149), Expect = 8e-08
Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 16/104 (15%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSL------- 107
+PPP +SKEDWRV QRF GSSFGG G + + D SSSLFS P L
Sbjct: 121 LPPPMLSKEDWRVAQRFQ-AGSSFGGSGGWERKRALV--DDNSSSLFSRQPGLSVHKVES 177
Query: 106 EMPDLQKLPG---------ELLEQNSNEFIRMPDVGLGTRRKSF 2
E+ +L+K G + LE+ S+ + GLG R KSF
Sbjct: 178 ELMELRKAAGRHIPRQTSSDWLERGSDGLTGLSGAGLGPRTKSF 221
>ref|XP_006407578.1| hypothetical protein EUTSA_v10019985mg [Eutrema salsugineum]
gi|557108724|gb|ESQ49031.1| hypothetical protein
EUTSA_v10019985mg [Eutrema salsugineum]
Length = 999
Score = 60.5 bits (145), Expect = 2e-07
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 14/102 (13%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSLEMPD--- 95
+PPP +S+EDWRV QRFH S F +G+ R + ++ D SSSLFSV P + +
Sbjct: 125 LPPPLLSREDWRVAQRFHNSESVFDPVGE--WRKKVVEVD-NSSSLFSVQPGIPVEQAEN 181
Query: 94 ----------LQKLPGELLEQNSNEFIRMPDV-GLGTRRKSF 2
+QK + L+Q +E I + GLG RRKSF
Sbjct: 182 DLMELRNAVAVQKTTVQRLDQGRDELIGLSGYPGLGPRRKSF 223
>ref|XP_002278108.2| PREDICTED: pumilio homolog 1-like [Vitis vinifera]
Length = 1015
Score = 60.1 bits (144), Expect = 3e-07
Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRG---------SSFGGIGDR--IGRNEYIKNDGQSSSLFSV 119
+PPP +SKEDWR QR H G SS GGIGDR +GR DG SSLF +
Sbjct: 109 LPPPRLSKEDWRFAQRLHGGGAGGGGSGSSSSVGGIGDRRKVGRG----GDGNGSSLFLM 164
Query: 118 HPSL----EMPDLQKLPGELLEQNSNEFIRMPDVGLGTRRKS 5
P + + + +E + I +P +GLG+R+KS
Sbjct: 165 QPGFNGQKDENGAESRKAQGVEWGGDGLIGLPGLGLGSRQKS 206
>ref|XP_002299859.2| pumilio/Puf RNA-binding domain-containing family protein [Populus
trichocarpa] gi|550348126|gb|EEE84664.2| pumilio/Puf
RNA-binding domain-containing family protein [Populus
trichocarpa]
Length = 1065
Score = 59.3 bits (142), Expect = 5e-07
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSLEM----- 101
+PPP +SKEDWR QR S GGIGDR R ++G S+FS+ P E
Sbjct: 116 LPPPLLSKEDWRSAQRLKGGSSVLGGIGDR--RKGSRADNGNGRSMFSMPPGFESRNQDS 173
Query: 100 -PDLQKLPGELLEQNSNEFIRMPDVGLGTRRKSF 2
+ +K+ G LE + I +P +GL +++KSF
Sbjct: 174 EVESEKVSGS-LEWGGDGLIGLPGLGLASKQKSF 206
>ref|XP_006299607.1| hypothetical protein CARUB_v10015786mg [Capsella rubella]
gi|482568316|gb|EOA32505.1| hypothetical protein
CARUB_v10015786mg [Capsella rubella]
Length = 1002
Score = 59.3 bits (142), Expect = 5e-07
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRGSSFGGIGDRIGRNEYIKNDGQSSSLFSVHPSLEMP---- 98
+PPP +S+EDWRV QRFH S F +G+ ++ + N SSSLFSV P + +
Sbjct: 127 LPPPLLSREDWRVAQRFHNSDSVFDPVGEWRKKSAQVDN---SSSLFSVQPGVPVEQAEN 183
Query: 97 DLQKLPG----------ELLEQNSNEFIRMPDVGLGTRRKSF 2
DL +L + L+Q + I P G+G RRKSF
Sbjct: 184 DLMELRNAVAQGRSQNVQRLDQGREDLIGYP--GIGPRRKSF 223
>ref|XP_004496247.1| PREDICTED: pumilio homolog 4-like isoform X5 [Cicer arietinum]
Length = 981
Score = 58.5 bits (140), Expect = 9e-07
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 20/108 (18%)
Frame = -3
Query: 265 MPPPAISKEDWRVQQRFHPRG-SSFGGIGDRIGRNEYIKN---DGQSSSLFSVHPSL--- 107
+PPP +SKEDWRV QRF G SS G GD + KN +G SSSLFS+ P
Sbjct: 117 LPPPLLSKEDWRVAQRFQVGGSSSIEGFGD------WRKNATPNGDSSSLFSMQPGFSVQ 170
Query: 106 ----EMPDLQKLPG---------ELLEQNSNEFIRMPDVGLGTRRKSF 2
++ +L+K G +LL+++ + RM GLG RR F
Sbjct: 171 QAENDLMELRKASGRNLSRQSSTQLLDRHMDGLARMSGTGLGGRRTCF 218