BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00025710
         (1356 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   413   e-113
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi...   412   e-112
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   409   e-111
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   407   e-111
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   404   e-110
ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform ...   404   e-110
ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform ...   404   e-110
gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [The...   394   e-107
gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma ca...   394   e-107
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca...   394   e-107
ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [S...   389   e-105
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   387   e-105
dbj|BAJ84827.1| predicted protein [Hordeum vulgare subsp. vulgare]    387   e-105
ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citr...   385   e-104
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr...   385   e-104
gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]                385   e-104
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ...   384   e-104
ref|XP_006857525.1| hypothetical protein AMTR_s00061p00026580, p...   384   e-104
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 383   e-103
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ...   382   e-103

>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
            gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
            [Oryza sativa Japonica Group]
            gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
            Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
            protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  413 bits (1062), Expect = e-113
 Identities = 241/475 (50%), Positives = 292/475 (61%), Gaps = 30/475 (6%)
 Frame = -3

Query: 1336 SHRHNSVSAIVQRKSFMDSEKAHTHSSVHKFEG--RSTEKMDLDDPTIKS---ENSDDDK 1172
            SH  NSV     ++ F++ +K+      HK  G  R  E  +L  P + S    +SDDDK
Sbjct: 95   SHNSNSVDKSKLKRPFVE-DKSDDSEDDHKPIGLRRKVEDRNLKKPAVGSGTANDSDDDK 153

Query: 1171 PLSVKYSGVINRSAFSHAA------------------EAPQXXXXXXXXXXXXXSNTSEE 1046
            PLS+K +     S+ ++ A                  + P               N S  
Sbjct: 154  PLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGNVS-- 211

Query: 1045 TDDSEDAKPLLSRFQSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGEK 866
             DDSED KPL +RF S V G +SA +S+  +K                +  +T+ +   K
Sbjct: 212  -DDSEDEKPLAARF-SKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTS-RNSIK 268

Query: 865  RPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKSPSSNS 686
            RP+ D N   SS+ KKA+ +  S SA VK      +E K DDND+ P++QR+K   SS S
Sbjct: 269  RPI-DNNNQTSSALKKARPSDVSASASVK------REPKADDNDNVPLSQRLKMGESSKS 321

Query: 685  ASINQNTLLKTASSSFKKSNLTMNKK-------RDSKFSKSLKAPVGSGGEQKWTTLQHN 527
                +N ++K + SS KK N  M  K       ++S+FSK++K P GSGG QKWTTL H+
Sbjct: 322  KPPAKN-IVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHS 380

Query: 526  GVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLI 347
            GVIFPP YKPHG+KMLY GQPVDLTPEQEEVATMFAVMKDTDYA K+ FI NF  DWR I
Sbjct: 381  GVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKI 440

Query: 346  LGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVK 167
            LGKNH+IKKFE CDFTPIYEWHL+EKEKKKQMTS               KYMWAIVDGVK
Sbjct: 441  LGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVK 500

Query: 166  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            EKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P+DITINIGK  PIP+CPIPGE W
Sbjct: 501  EKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESW 555


>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
          Length = 916

 Score =  412 bits (1058), Expect = e-112
 Identities = 240/475 (50%), Positives = 292/475 (61%), Gaps = 30/475 (6%)
 Frame = -3

Query: 1336 SHRHNSVSAIVQRKSFMDSEKAHTHSSVHKFEG--RSTEKMDLDDPTIKS---ENSDDDK 1172
            SH  NSV     ++ F++ +K+      HK  G  R  E  +L  P + S    +SDDDK
Sbjct: 95   SHNSNSVDKSKLKRPFVE-DKSDDSEDDHKPIGLRRKVEDRNLKKPAVGSGTANDSDDDK 153

Query: 1171 PLSVKYSGVINRSAFSHAA------------------EAPQXXXXXXXXXXXXXSNTSEE 1046
            PLS+K +     S+ ++ A                  + P               N S  
Sbjct: 154  PLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGNVS-- 211

Query: 1045 TDDSEDAKPLLSRFQSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGEK 866
             DDSED KPL +RF S V G +SA +S+  +K                +  +T+ +   K
Sbjct: 212  -DDSEDEKPLAARF-SKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTS-RNSIK 268

Query: 865  RPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKSPSSNS 686
            RP+ D N   SS+ KKA+ +  S SA VK      +E K DDND+ P++QR+K   SS S
Sbjct: 269  RPI-DNNNQTSSALKKARPSDVSASASVK------REPKADDNDNVPLSQRLKMGESSKS 321

Query: 685  ASINQNTLLKTASSSFKKSNLTMNKK-------RDSKFSKSLKAPVGSGGEQKWTTLQHN 527
                +N ++K + SS KK N  M  K       ++S+FSK++K P GSGG QKWTTL H+
Sbjct: 322  KPPAKN-IVKKSPSSLKKDNKKMKMKLKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHS 380

Query: 526  GVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLI 347
            GVIFPP YKPHG+K+LY GQPVDLTPEQEEVATMFAVMKDTDYA K+ FI NF  DWR I
Sbjct: 381  GVIFPPPYKPHGVKILYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKI 440

Query: 346  LGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVK 167
            LGKNH+IKKFE CDFTPIYEWHL+EKEKKKQMTS               KYMWAIVDGVK
Sbjct: 441  LGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVK 500

Query: 166  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            EKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P+DITINIGK  PIP+CPIPGE W
Sbjct: 501  EKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESW 555


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  409 bits (1050), Expect = e-111
 Identities = 226/452 (50%), Positives = 279/452 (61%), Gaps = 25/452 (5%)
 Frame = -3

Query: 1282 SEKAHTHSSVHKFEGRSTEKMDLDDPTIKS-------------ENSDDDKPLSVKYSGVI 1142
            S K    + V    G+S     L+ P++ S             ++S+D+ PL +K     
Sbjct: 72   SSKFPLKTYVRSSSGKSLGSKGLNSPSLSSHPPETKVGVKESSDDSEDEIPLLLKLQLKS 131

Query: 1141 NRSAFSHA---AEAPQXXXXXXXXXXXXXSNTSEETDDSEDAKPLLSRFQSNV-IGVSSA 974
             + A S     ++                 N    +DDSED  PL S+F+    +G S  
Sbjct: 132  RKGASSSKLLDSKGLSSPASSRPQSQKAKVNNKNLSDDSEDEIPLSSKFRLKTGMGASLD 191

Query: 973  KVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGEKRPLSDANPAESSSSKKAKLTGTSV 794
            K+ N  EK                  +  +PKG  KRPL  AN +  SSSKK KL   SV
Sbjct: 192  KLDNFDEKKPLTSTLKPNGISKKDDERVKSPKGQNKRPLGQANTSHHSSSKKPKLLDGSV 251

Query: 793  SAKVKQEVSVSKESKEDDND-------HTPIAQRMKKSPSSNSASINQNTLLKTA-SSSF 638
              KVKQ VSV  E K+DD+D       +TP  +R+KKS SS++   ++  ++ ++   + 
Sbjct: 252  KGKVKQ-VSVKAEQKDDDDDDNDDDDEYTPTVKRLKKSVSSDNKKASKTKVIPSSRKKAT 310

Query: 637  KKSNLTMNKKRDSKFSKSLKAPVGSGGEQKWTTLQHNGVIFPPLYKPHGIKMLYKGQPVD 458
            KK+  +    + SK+SKS K P  SG  QKWTTL+HNGVIFPP YKPHG+KMLY G+PVD
Sbjct: 311  KKAKKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVD 370

Query: 457  LTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLILGKNHIIKKFEDCDFTPIYEWHL 278
            LTPEQEEVATMFAVMKDTDYA K +FI+NFM+DWR+ LGKNH+IKKFE CDFTPIYEWH 
Sbjct: 371  LTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHE 430

Query: 277  KEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 98
            KEKEKKKQMT+               KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKM
Sbjct: 431  KEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKM 490

Query: 97   GKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            GKLKKRI P+DITINIGK+ P+P+CPIPGERW
Sbjct: 491  GKLKKRICPSDITINIGKEAPVPECPIPGERW 522


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  407 bits (1047), Expect = e-111
 Identities = 235/450 (52%), Positives = 284/450 (63%), Gaps = 22/450 (4%)
 Frame = -3

Query: 1285 DSEKAHTHSSVH-KFEGRSTEKMDLDDPTIKSENSDDDKPLSVKYSGVINRSAFSHAA-- 1115
            DSE  H    +  K E ++ +K  +   T  +++SDD+KPLS+K +     S  ++ A  
Sbjct: 116  DSEDDHKPIGLRRKVEDKNFKKAAVGSET--ADDSDDNKPLSLKINSTKTPSNSTNKASV 173

Query: 1114 ----------------EAPQXXXXXXXXXXXXXSNTSEETDDSEDAKPLLSRFQSNVIGV 983
                            E P              +N S   DDSED KPL +RF S V G 
Sbjct: 174  LKVTPKIVQPADDSEDEKPLARRLPAKTTLKSGANAS---DDSEDEKPLAARF-SKVTGS 229

Query: 982  SSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGEKRPLSDANPAESSSSKKAKLTG 803
            +SA +S+  +K                ++ T   +   KRP+ D N    S+ KKA+ + 
Sbjct: 230  ASASISSSKDKVQSANLKPSSSSKVS-NNDTNTSRNSIKRPI-DNNNQSISALKKARPSD 287

Query: 802  TSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKSPSSNSASINQNTLLKTASSSFKKSNL 623
             SVSA VK      +ESK DDND+ P++QR+K   SS S    +N ++K   SSFKK + 
Sbjct: 288  VSVSASVK------RESKADDNDNIPLSQRLKMGESSKSKPPAKN-IVKKNPSSFKKDSK 340

Query: 622  TMNKKR---DSKFSKSLKAPVGSGGEQKWTTLQHNGVIFPPLYKPHGIKMLYKGQPVDLT 452
             M  K+   +S+FSK++K P GSGG QKWTTL HNGVIFPP YKPHG+KMLY GQPVDLT
Sbjct: 341  KMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHNGVIFPPPYKPHGVKMLYNGQPVDLT 400

Query: 451  PEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLILGKNHIIKKFEDCDFTPIYEWHLKE 272
            PEQEEVATMF+VMKDTDYA K+ FI NF  DWR ILGKNHIIKKFE CDFTPIYEWHL+E
Sbjct: 401  PEQEEVATMFSVMKDTDYASKQTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYEWHLRE 460

Query: 271  KEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 92
            KEKKKQMTS               KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGK
Sbjct: 461  KEKKKQMTSEEKKAVKEEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 520

Query: 91   LKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            LK+RI+P+DITINIGK  PIP+CPIPGE W
Sbjct: 521  LKRRIQPSDITINIGKGAPIPECPIPGESW 550


>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  404 bits (1037), Expect = e-110
 Identities = 221/428 (51%), Positives = 272/428 (63%), Gaps = 16/428 (3%)
 Frame = -3

Query: 1237 RSTEKMDLDDPTIKSENSDDDKPLSVKYSGVINRSAFS-HAAEAPQXXXXXXXXXXXXXS 1061
            +  E+  L     K+++SDDDKPLS+K    IN S  S + A  P              +
Sbjct: 134  KKVEEKKLKRVDEKADDSDDDKPLSLK----INSSKMSSNCASRP--------VLQKAVA 181

Query: 1060 NTSEETDDSEDAKPLLSRFQSNVIGVSSAKVSNGPE----------KPXXXXXXXXXXXX 911
               +  +DS+D KPL SR  +N    S    S   E          K             
Sbjct: 182  KVEQPDEDSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSS 241

Query: 910  XGISSKTTAPKGGEKRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDH 731
             G+++ +  P+   KRPL ++N   S + KKAK +  S SA VK+E+      K DDND+
Sbjct: 242  KGLNNDSNGPRNLGKRPLDNSNQT-SLALKKAKPSNVSASASVKREI------KADDNDN 294

Query: 730  TPIAQRMKKSPSSNSASINQNTLLKTASSSFK-----KSNLTMNKKRDSKFSKSLKAPVG 566
            TP+AQR+K   SS      +N + K+ +S  K     K  +     ++S+FSK++K P G
Sbjct: 295  TPLAQRLKIGESSKGKPSAKNVVKKSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPG 354

Query: 565  SGGEQKWTTLQHNGVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKK 386
            SGG +KWTTL+HNGVIFPP YKPHG+KMLY GQPVDLTPEQEEVATMFAVMKDTDYA K 
Sbjct: 355  SGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKP 414

Query: 385  QFIKNFMDDWRLILGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXX 206
             FI+NF  DWR +LGKNH+IKKFE CDFTPIYEWHL+EKEKKKQMT+             
Sbjct: 415  TFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQ 474

Query: 205  XXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPK 26
              KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P+DITINIG+D P+P+
Sbjct: 475  EEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPE 534

Query: 25   CPIPGERW 2
            CPIPGERW
Sbjct: 535  CPIPGERW 542


>ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform X2 [Setaria italica]
          Length = 930

 Score =  404 bits (1037), Expect = e-110
 Identities = 221/428 (51%), Positives = 272/428 (63%), Gaps = 16/428 (3%)
 Frame = -3

Query: 1237 RSTEKMDLDDPTIKSENSDDDKPLSVKYSGVINRSAFS-HAAEAPQXXXXXXXXXXXXXS 1061
            +  E+  L     K+++SDDDKPLS+K    IN S  S + A  P              +
Sbjct: 134  KKVEEKKLKRVDEKADDSDDDKPLSLK----INSSKMSSNCASRP--------VLQKAVA 181

Query: 1060 NTSEETDDSEDAKPLLSRFQSNVIGVSSAKVSNGPE----------KPXXXXXXXXXXXX 911
               +  +DS+D KPL SR  +N    S    S   E          K             
Sbjct: 182  KVEQPDEDSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSS 241

Query: 910  XGISSKTTAPKGGEKRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDH 731
             G+++ +  P+   KRPL ++N   S + KKAK +  S SA VK+E+      K DDND+
Sbjct: 242  KGLNNDSNGPRNLGKRPLDNSNQT-SLALKKAKPSNVSASASVKREI------KADDNDN 294

Query: 730  TPIAQRMKKSPSSNSASINQNTLLKTASSSFK-----KSNLTMNKKRDSKFSKSLKAPVG 566
            TP+AQR+K   SS      +N + K+ +S  K     K  +     ++S+FSK++K P G
Sbjct: 295  TPLAQRLKIGESSKGKPSAKNVVKKSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPG 354

Query: 565  SGGEQKWTTLQHNGVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKK 386
            SGG +KWTTL+HNGVIFPP YKPHG+KMLY GQPVDLTPEQEEVATMFAVMKDTDYA K 
Sbjct: 355  SGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKP 414

Query: 385  QFIKNFMDDWRLILGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXX 206
             FI+NF  DWR +LGKNH+IKKFE CDFTPIYEWHL+EKEKKKQMT+             
Sbjct: 415  TFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQ 474

Query: 205  XXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPK 26
              KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P+DITINIG+D P+P+
Sbjct: 475  EEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPE 534

Query: 25   CPIPGERW 2
            CPIPGERW
Sbjct: 535  CPIPGERW 542


>ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Setaria italica]
          Length = 932

 Score =  404 bits (1037), Expect = e-110
 Identities = 221/428 (51%), Positives = 272/428 (63%), Gaps = 16/428 (3%)
 Frame = -3

Query: 1237 RSTEKMDLDDPTIKSENSDDDKPLSVKYSGVINRSAFS-HAAEAPQXXXXXXXXXXXXXS 1061
            +  E+  L     K+++SDDDKPLS+K    IN S  S + A  P              +
Sbjct: 134  KKVEEKKLKRVDEKADDSDDDKPLSLK----INSSKMSSNCASRP--------VLQKAVA 181

Query: 1060 NTSEETDDSEDAKPLLSRFQSNVIGVSSAKVSNGPE----------KPXXXXXXXXXXXX 911
               +  +DS+D KPL SR  +N    S    S   E          K             
Sbjct: 182  KVEQPDEDSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSS 241

Query: 910  XGISSKTTAPKGGEKRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDH 731
             G+++ +  P+   KRPL ++N   S + KKAK +  S SA VK+E+      K DDND+
Sbjct: 242  KGLNNDSNGPRNLGKRPLDNSNQT-SLALKKAKPSNVSASASVKREI------KADDNDN 294

Query: 730  TPIAQRMKKSPSSNSASINQNTLLKTASSSFK-----KSNLTMNKKRDSKFSKSLKAPVG 566
            TP+AQR+K   SS      +N + K+ +S  K     K  +     ++S+FSK++K P G
Sbjct: 295  TPLAQRLKIGESSKGKPSAKNVVKKSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPG 354

Query: 565  SGGEQKWTTLQHNGVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKK 386
            SGG +KWTTL+HNGVIFPP YKPHG+KMLY GQPVDLTPEQEEVATMFAVMKDTDYA K 
Sbjct: 355  SGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKP 414

Query: 385  QFIKNFMDDWRLILGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXX 206
             FI+NF  DWR +LGKNH+IKKFE CDFTPIYEWHL+EKEKKKQMT+             
Sbjct: 415  TFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQ 474

Query: 205  XXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPK 26
              KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P+DITINIG+D P+P+
Sbjct: 475  EEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPE 534

Query: 25   CPIPGERW 2
            CPIPGERW
Sbjct: 535  CPIPGERW 542


>gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [Theobroma cacao]
          Length = 733

 Score =  394 bits (1011), Expect = e-107
 Identities = 220/420 (52%), Positives = 267/420 (63%), Gaps = 6/420 (1%)
 Frame = -3

Query: 1243 EGRSTEKMDLDDPTIKSENSDDDKPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXX 1064
            EGRS  K    +P    ++ DD  PLS +  G+ N+     +  AP              
Sbjct: 7    EGRSPIK-GTTEPNSDDDDDDDSLPLSARLKGISNQGNKGASTSAPAQSRRLVPKT---- 61

Query: 1063 SNTSEETDDSEDAKPLLSRF--QSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKT 890
                   +D +D  PL +RF  +SN  G SS+++ +  EK                  + 
Sbjct: 62   -EVKVSAEDPDDEAPLSARFNVKSNT-GTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQN 119

Query: 889  TAPKGGEKRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRM 710
            ++   G KRPL   N ++ SS+KK K +    + K KQ V+V  E  ++D+DH PIAQRM
Sbjct: 120  SSTLSG-KRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQ-VTVKAEKADEDDDHMPIAQRM 177

Query: 709  KKSPSSNS--ASINQNTLLKTASSSFKKSNLTMNKK-RDSKFSKSLKAPVGSG-GEQKWT 542
            KKS +SNS  +S+ Q T  K  SSSFKK N    K+ + SK+ KS K P  SG G++KW+
Sbjct: 178  KKSTASNSKLSSMKQKTT-KVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWS 236

Query: 541  TLQHNGVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMD 362
            TL HNGVIFP  Y PHG+KMLY G+PVDLTPEQEEVATMFAVMKDTDY  K QF KNF +
Sbjct: 237  TLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWE 296

Query: 361  DWRLILGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAI 182
            DW  +LGKNH IK  + CDFTPIYEWHL+EKEKKKQM+S               K+MWAI
Sbjct: 297  DWSKLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEKLKQEEKFMWAI 356

Query: 181  VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGKD PIP+CPIPGERW
Sbjct: 357  VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERW 416


>gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
            gi|508720296|gb|EOY12193.1| DNA topoisomerase I alpha
            isoform 3 [Theobroma cacao]
          Length = 836

 Score =  394 bits (1011), Expect = e-107
 Identities = 220/420 (52%), Positives = 267/420 (63%), Gaps = 6/420 (1%)
 Frame = -3

Query: 1243 EGRSTEKMDLDDPTIKSENSDDDKPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXX 1064
            EGRS  K    +P    ++ DD  PLS +  G+ N+     +  AP              
Sbjct: 134  EGRSPIK-GTTEPNSDDDDDDDSLPLSARLKGISNQGNKGASTSAPAQSRRLVPKT---- 188

Query: 1063 SNTSEETDDSEDAKPLLSRF--QSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKT 890
                   +D +D  PL +RF  +SN  G SS+++ +  EK                  + 
Sbjct: 189  -EVKVSAEDPDDEAPLSARFNVKSNT-GTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQN 246

Query: 889  TAPKGGEKRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRM 710
            ++   G KRPL   N ++ SS+KK K +    + K KQ V+V  E  ++D+DH PIAQRM
Sbjct: 247  SSTLSG-KRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQ-VTVKAEKADEDDDHMPIAQRM 304

Query: 709  KKSPSSNS--ASINQNTLLKTASSSFKKSNLTMNKK-RDSKFSKSLKAPVGSG-GEQKWT 542
            KKS +SNS  +S+ Q T  K  SSSFKK N    K+ + SK+ KS K P  SG G++KW+
Sbjct: 305  KKSTASNSKLSSMKQKTT-KVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWS 363

Query: 541  TLQHNGVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMD 362
            TL HNGVIFP  Y PHG+KMLY G+PVDLTPEQEEVATMFAVMKDTDY  K QF KNF +
Sbjct: 364  TLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWE 423

Query: 361  DWRLILGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAI 182
            DW  +LGKNH IK  + CDFTPIYEWHL+EKEKKKQM+S               K+MWAI
Sbjct: 424  DWSKLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEKLKQEEKFMWAI 483

Query: 181  VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGKD PIP+CPIPGERW
Sbjct: 484  VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERW 543


>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao]
          Length = 904

 Score =  394 bits (1011), Expect = e-107
 Identities = 220/420 (52%), Positives = 267/420 (63%), Gaps = 6/420 (1%)
 Frame = -3

Query: 1243 EGRSTEKMDLDDPTIKSENSDDDKPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXX 1064
            EGRS  K    +P    ++ DD  PLS +  G+ N+     +  AP              
Sbjct: 134  EGRSPIK-GTTEPNSDDDDDDDSLPLSARLKGISNQGNKGASTSAPAQSRRLVPKT---- 188

Query: 1063 SNTSEETDDSEDAKPLLSRF--QSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKT 890
                   +D +D  PL +RF  +SN  G SS+++ +  EK                  + 
Sbjct: 189  -EVKVSAEDPDDEAPLSARFNVKSNT-GTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQN 246

Query: 889  TAPKGGEKRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRM 710
            ++   G KRPL   N ++ SS+KK K +    + K KQ V+V  E  ++D+DH PIAQRM
Sbjct: 247  SSTLSG-KRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQ-VTVKAEKADEDDDHMPIAQRM 304

Query: 709  KKSPSSNS--ASINQNTLLKTASSSFKKSNLTMNKK-RDSKFSKSLKAPVGSG-GEQKWT 542
            KKS +SNS  +S+ Q T  K  SSSFKK N    K+ + SK+ KS K P  SG G++KW+
Sbjct: 305  KKSTASNSKLSSMKQKTT-KVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWS 363

Query: 541  TLQHNGVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMD 362
            TL HNGVIFP  Y PHG+KMLY G+PVDLTPEQEEVATMFAVMKDTDY  K QF KNF +
Sbjct: 364  TLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWE 423

Query: 361  DWRLILGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAI 182
            DW  +LGKNH IK  + CDFTPIYEWHL+EKEKKKQM+S               K+MWAI
Sbjct: 424  DWSKLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEKLKQEEKFMWAI 483

Query: 181  VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGKD PIP+CPIPGERW
Sbjct: 484  VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERW 543


>ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
            gi|241940222|gb|EES13367.1| hypothetical protein
            SORBIDRAFT_07g003610 [Sorghum bicolor]
          Length = 921

 Score =  389 bits (998), Expect = e-105
 Identities = 217/413 (52%), Positives = 261/413 (63%), Gaps = 16/413 (3%)
 Frame = -3

Query: 1192 ENSDDDKPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXXSNTSEETDDSEDAKPLL 1013
            ++ DDDKPLS+K    IN S  S+ + +                   +  +DS+D KPL 
Sbjct: 167  DSDDDDKPLSLK----INSSKMSNNSVSKPVLQRIAP-------KVEQPDEDSDDDKPLA 215

Query: 1012 SRFQSNVIGVSSAKVSNGPE----------KPXXXXXXXXXXXXXGISSKTTAPKGGEKR 863
            SR  +N    S   VS   E          K              G++S T   +   KR
Sbjct: 216  SRLPNNACPKSGGNVSEDSEDEKPLAARFSKVAGSGNLKTASSSKGLNSDTNGQRSLGKR 275

Query: 862  PLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKSPSSNSA 683
            PL ++N   S + KKAK +  S SA VK+E+      K DDND+TP+AQR+K   SS   
Sbjct: 276  PLDNSNQT-SLAIKKAKPSNVSASASVKREI------KTDDNDNTPLAQRLKMGESSKGK 328

Query: 682  SINQNTLLKTASSSFK------KSNLTMNKKRDSKFSKSLKAPVGSGGEQKWTTLQHNGV 521
               ++ + K+ +S+        K  L  N K +S+FSK+++ P GSG  +KWTTL+HNGV
Sbjct: 329  PPAKSIVKKSPASAKDIKKLKGKGKLKKNMK-NSQFSKTMRVPPGSGEGKKWTTLEHNGV 387

Query: 520  IFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLILG 341
            IFPP YKPHG+KMLY GQPVDLTPEQEEVATMFAVMKDTDYA K  FI NF  DWR ILG
Sbjct: 388  IFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIDNFFTDWRKILG 447

Query: 340  KNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEK 161
            KNHIIKKFE CDFTPIYEWHL+EKEKKKQMT+               KYMWA+VDGVKEK
Sbjct: 448  KNHIIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEK 507

Query: 160  VGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            VGNFRVEPPGLFRGRGEHPKMGKLK+RI+P+DITINIGK  P+P+CPIPGE W
Sbjct: 508  VGNFRVEPPGLFRGRGEHPKMGKLKRRIQPSDITINIGKGAPVPECPIPGESW 560


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  387 bits (995), Expect = e-105
 Identities = 213/405 (52%), Positives = 261/405 (64%), Gaps = 5/405 (1%)
 Frame = -3

Query: 1201 IKSENSDDDKPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXXSNTSEETDDSEDAK 1022
            +  E+S+DDKPLS +  G  N       A A                +  +E  D +D  
Sbjct: 132  VDDEDSEDDKPLSSRIKGSTNNVNKGVTAPA----------------HVKDEPSD-DDEV 174

Query: 1021 PLLSRF--QSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGEKRPLSDA 848
            PL SRF  +SN    SS  + +   +P                 K++      KRP+ + 
Sbjct: 175  PLSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSVVP--TKRPMDNK 232

Query: 847  NPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKSPSS-NSASINQ 671
             P+  SS+KK KL     + KVKQ V+V  E K DD+DH  I+QRMKK+ SS N +S  +
Sbjct: 233  VPSNHSSAKKPKLLDACTTTKVKQ-VTVKVEQKADDDDHLTISQRMKKADSSANKSSFAK 291

Query: 670  NTLLKTASSSFKKSNLTMNKK-RDSKFSKSLKAPVGSG-GEQKWTTLQHNGVIFPPLYKP 497
              + K  SSS KK+     K+ ++SK+SKS K   GS  G++KWTTL HNGVIFPP YKP
Sbjct: 292  KKVTKVVSSSLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYKP 351

Query: 496  HGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLILGKNHIIKKF 317
            HG+K+LYKG+P+DLTPEQEEVATMFAVMKDTDY  K QF +NF +DWR +LGKNH+I+K 
Sbjct: 352  HGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNHVIQKL 411

Query: 316  EDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEP 137
            +DCDF PIYEWH +EKEKKKQM++               KYMWAIV+GVKEKVGNFRVEP
Sbjct: 412  DDCDFNPIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEP 471

Query: 136  PGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            PGLFRGRGEHPKMGKLK RIRP+DITINIGKD PIP+CPIPGERW
Sbjct: 472  PGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERW 516


>dbj|BAJ84827.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 946

 Score =  387 bits (994), Expect = e-105
 Identities = 227/489 (46%), Positives = 285/489 (58%), Gaps = 38/489 (7%)
 Frame = -3

Query: 1354 DDDKPLSHRHNSVSAIVQRKSFMDSEKAHTHSSVHKFEG-----------RSTEKMDLDD 1208
            DDDKPL+ R    + +  +K     E A+     HK  G            ST K  L  
Sbjct: 118  DDDKPLAFRKKPDTKL--KKVVAGGENAYDSDDDHKPLGMNINSAKVASNNSTSKTVLVK 175

Query: 1207 PTIKSENSDDD-----KPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXXSNTSEE- 1046
               K+   DDD     KPL  +++    + A S++   P               +  E+ 
Sbjct: 176  TAPKTVQPDDDSDDDHKPLGQRFNSA--KGASSNSTNKPVLLKSEPKIVQSDDDSEDEKP 233

Query: 1045 ----------------TDDSEDAKPLLSRFQSNVIGVSSAKVSNGPEKPXXXXXXXXXXX 914
                              DSED KPL +RF     G +S  +SN  +K            
Sbjct: 234  LASRLPTNAASKSRGSASDSEDEKPLSARFSRGTAG-TSVSISNSKDK--------LPSN 284

Query: 913  XXGISSKTTAPKGGEKRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDND 734
              G+++ ++AP+   KRP  D N   SS+ KK K +  SVS  VK      +ESK+DD++
Sbjct: 285  NKGLNNNSSAPRNSVKRP-GDNNNQTSSALKKIKYSDVSVSGSVK------RESKDDDSN 337

Query: 733  HTPIAQRMKKSPSSNSASINQNTLLKTASSSFKKSNLTMNKK-----RDSKFSKSLKAPV 569
              P+ +++    SS S    +N ++K +  S KK N     K     + S+FSKSL+ P 
Sbjct: 338  SIPVERKLTLGESSKSKLPVKN-IVKKSPLSVKKDNKKFKTKTKKAMKSSQFSKSLREPP 396

Query: 568  GSGGEQKWTTLQHNGVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALK 389
            GSGG +KW+TL+HNGVIFPPLY PHG+KMLY GQPV+LTP++EEVATMFAVMKDT+YA K
Sbjct: 397  GSGGGKKWSTLEHNGVIFPPLYDPHGVKMLYNGQPVELTPDEEEVATMFAVMKDTEYATK 456

Query: 388  KQFIKNFMDDWRLILGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXX 209
            K FI NF  DW+ ILGKNHIIKKFE CDFTPI+EWHL+EKEKKKQMTS            
Sbjct: 457  KTFIDNFFGDWKKILGKNHIIKKFELCDFTPIFEWHLREKEKKKQMTSEEKKALREEKLK 516

Query: 208  XXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIP 29
               KYMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGKD P+P
Sbjct: 517  QEEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDTPVP 576

Query: 28   KCPIPGERW 2
            +CPI GE W
Sbjct: 577  ECPIEGESW 585


>ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
            gi|557555706|gb|ESR65720.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
          Length = 824

 Score =  385 bits (990), Expect = e-104
 Identities = 218/415 (52%), Positives = 267/415 (64%), Gaps = 11/415 (2%)
 Frame = -3

Query: 1213 DDPTIKSENSD--DDKPLSVKYSGV---INRSAFSHAAEAPQXXXXXXXXXXXXXSNTSE 1049
            D   +KS+++D  DDKPLS +  G    +N+   +  A+A                N   
Sbjct: 142  DGNGLKSDDNDSEDDKPLSARLKGNTKNVNQGIGASKADAA-----------ISEVNVKT 190

Query: 1048 ETDDSEDAKPLLSRFQSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGE 869
            + +DS+D  PL SRF  +  G S AK  +  EK                +S+ T  K   
Sbjct: 191  DPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGS----TSRETQQKSSS 246

Query: 868  ---KRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKS- 701
               KRPL  A+ + +SS+KK K++ TS   KVKQ V+V  E K DD+DH PI+QRMK S 
Sbjct: 247  VPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQ-VTVKVEKKADDDDHIPISQRMKNSA 305

Query: 700  PSSNSASINQNTLLKTASSSFKKSNLTMNKK-RDSKFSKSLKAPVGSG-GEQKWTTLQHN 527
            PS   +  N     K+ SSS KK N    K  ++S++SKS K   GSG G++KWTTL HN
Sbjct: 306  PSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHN 365

Query: 526  GVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLI 347
            GVIFPP Y PHG+KMLYKG+ V+LTPEQEEVATMFAVM DTDY  K +F +NF +DWR +
Sbjct: 366  GVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKL 425

Query: 346  LGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVK 167
            LGKNH+I+  E CDF PIY+WH ++KEKKKQM+S               KYMWAIVDGVK
Sbjct: 426  LGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVK 485

Query: 166  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            EKVGNFRVEPPGLFRGRGEHPKMGKLKKRI+P+DITINIGKDVPIP+CPIPGE W
Sbjct: 486  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESW 540


>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
            gi|567920950|ref|XP_006452481.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555705|gb|ESR65719.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555707|gb|ESR65721.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
          Length = 902

 Score =  385 bits (990), Expect = e-104
 Identities = 218/415 (52%), Positives = 267/415 (64%), Gaps = 11/415 (2%)
 Frame = -3

Query: 1213 DDPTIKSENSD--DDKPLSVKYSGV---INRSAFSHAAEAPQXXXXXXXXXXXXXSNTSE 1049
            D   +KS+++D  DDKPLS +  G    +N+   +  A+A                N   
Sbjct: 142  DGNGLKSDDNDSEDDKPLSARLKGNTKNVNQGIGASKADAA-----------ISEVNVKT 190

Query: 1048 ETDDSEDAKPLLSRFQSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGE 869
            + +DS+D  PL SRF  +  G S AK  +  EK                +S+ T  K   
Sbjct: 191  DPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGS----TSRETQQKSSS 246

Query: 868  ---KRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKS- 701
               KRPL  A+ + +SS+KK K++ TS   KVKQ V+V  E K DD+DH PI+QRMK S 
Sbjct: 247  VPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQ-VTVKVEKKADDDDHIPISQRMKNSA 305

Query: 700  PSSNSASINQNTLLKTASSSFKKSNLTMNKK-RDSKFSKSLKAPVGSG-GEQKWTTLQHN 527
            PS   +  N     K+ SSS KK N    K  ++S++SKS K   GSG G++KWTTL HN
Sbjct: 306  PSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHN 365

Query: 526  GVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLI 347
            GVIFPP Y PHG+KMLYKG+ V+LTPEQEEVATMFAVM DTDY  K +F +NF +DWR +
Sbjct: 366  GVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKL 425

Query: 346  LGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVK 167
            LGKNH+I+  E CDF PIY+WH ++KEKKKQM+S               KYMWAIVDGVK
Sbjct: 426  LGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVK 485

Query: 166  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            EKVGNFRVEPPGLFRGRGEHPKMGKLKKRI+P+DITINIGKDVPIP+CPIPGE W
Sbjct: 486  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESW 540


>gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]
          Length = 949

 Score =  385 bits (988), Expect = e-104
 Identities = 228/488 (46%), Positives = 283/488 (57%), Gaps = 37/488 (7%)
 Frame = -3

Query: 1354 DDDKPLSHRHNSVSAIVQRKSFMDSEKAHTHSSVHKFEGRS--TEKMDLDDPTIKS---- 1193
            DDDKPL+ R      +  +K     E A+     HK  G +  + K+  ++ T K+    
Sbjct: 119  DDDKPLAFRKKPDMKL--KKVDTGGENAYGSEDDHKPLGMNINSAKVASNNSTNKTVLLK 176

Query: 1192 -----------ENSDDDKPLSVKYS---GVINRSA-----FSHAAEAPQXXXXXXXXXXX 1070
                       ++ DD KPL  +++   G  N S      F  A +  Q           
Sbjct: 177  TAPLKTLQPDDDSDDDHKPLVQRFNPAKGASNNSTSKPVLFKAAPKIVQSDDDSEDEKPL 236

Query: 1069 XXS-------NTSEETDDSEDAKPLLSRFQSNVIGVSSAKVSNGPEKPXXXXXXXXXXXX 911
                       +   T DSED KPL +RF     G +SA +SN  +K             
Sbjct: 237  ASRLPTNAAPKSRASTSDSEDEKPLSARFSRGTAG-TSASISNSKDKLPSNNKGP----- 290

Query: 910  XGISSKTTAPKGGEKRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDH 731
               S  ++AP+   KRP  + N   SS+ KKAK +  S S  VK      +ESK DDN+ 
Sbjct: 291  ---SINSSAPRNSVKRPSDNNNNQTSSALKKAKSSDASASGSVK------RESKVDDNNS 341

Query: 730  TPIAQRMKKSPSSNSASINQNTLLKTASSSFKKSNLTMNKK-----RDSKFSKSLKAPVG 566
             P+ +++    SS S    +N ++K +  S KK N     K     + S+FSKSL+ P G
Sbjct: 342  VPVERKLTPGESSKSKPPVKN-IVKKSPLSVKKDNKKFKTKTKKTMKSSQFSKSLRVPPG 400

Query: 565  SGGEQKWTTLQHNGVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKK 386
            SGG +KW+TL+HNGVIFPP Y PHG+KMLY GQPV+LTPE+EEVATMFAVMKDT+YA KK
Sbjct: 401  SGGGKKWSTLEHNGVIFPPPYNPHGVKMLYNGQPVELTPEEEEVATMFAVMKDTEYAAKK 460

Query: 385  QFIKNFMDDWRLILGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXX 206
             FI NF  DW+ ILGKNHIIKKFE CDFTPIYEWHL+EKEKKKQMTS             
Sbjct: 461  TFIDNFFGDWKKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEERKALREEKLKQ 520

Query: 205  XXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPK 26
              KYMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGK  P+P+
Sbjct: 521  EEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKGTPVPE 580

Query: 25   CPIPGERW 2
            CPI GE W
Sbjct: 581  CPIEGESW 588


>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
            gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Citrus sinensis]
            gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
            topoisomerase 1-like isoform X3 [Citrus sinensis]
            gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
            topoisomerase 1-like isoform X4 [Citrus sinensis]
          Length = 902

 Score =  384 bits (985), Expect = e-104
 Identities = 217/415 (52%), Positives = 266/415 (64%), Gaps = 11/415 (2%)
 Frame = -3

Query: 1213 DDPTIKSENSD--DDKPLSVKYSGV---INRSAFSHAAEAPQXXXXXXXXXXXXXSNTSE 1049
            D   +KS+++D  DDKPLS +  G    +N+   +  A+A                N   
Sbjct: 142  DGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAA-----------ISEVNVKT 190

Query: 1048 ETDDSEDAKPLLSRFQSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGE 869
            + +DS+D  PL SRF  +  G S AK  +  EK                +S+ T  K   
Sbjct: 191  DPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGS----TSRETQQKSSS 246

Query: 868  ---KRPLSDANPAESSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKS- 701
               KRPL  A+ + +SS+KK K++ TS   KVKQ V+V  E K DD+DH PI+QRMK S 
Sbjct: 247  VPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQ-VTVKVEKKADDDDHIPISQRMKNSA 305

Query: 700  PSSNSASINQNTLLKTASSSFKKSNLTMNKK-RDSKFSKSLKAPVGSG-GEQKWTTLQHN 527
            PS   +  N     K+ SSS  K N    K  ++S++SKS K   GSG G++KWTTL HN
Sbjct: 306  PSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHN 365

Query: 526  GVIFPPLYKPHGIKMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLI 347
            GVIFPP Y PHG+KMLYKG+ V+LTPEQEEVATMFAVM DTDY  K +F +NF +DWR +
Sbjct: 366  GVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKL 425

Query: 346  LGKNHIIKKFEDCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVK 167
            LGKNH+I+  E CDF PIY+WH ++KEKKKQM+S               KYMWAIVDGVK
Sbjct: 426  LGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVK 485

Query: 166  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            EKVGNFRVEPPGLFRGRGEHPKMGKLKKRI+P+DITINIGKDVPIP+CPIPGE W
Sbjct: 486  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESW 540


>ref|XP_006857525.1| hypothetical protein AMTR_s00061p00026580, partial [Amborella
            trichopoda] gi|548861621|gb|ERN18992.1| hypothetical
            protein AMTR_s00061p00026580, partial [Amborella
            trichopoda]
          Length = 595

 Score =  384 bits (985), Expect = e-104
 Identities = 231/456 (50%), Positives = 276/456 (60%), Gaps = 5/456 (1%)
 Frame = -3

Query: 1354 DDDKPLSHRHNSVSAIVQRKSFMDSEKAHTHSSVHKFEGRSTEKMDLDDPTIKSENSDDD 1175
            DDDKPL+ R  +V+  V+  S   +    + + V K   +S   +    P    ++SDD+
Sbjct: 137  DDDKPLNSRVAAVAKTVRNNSSGPNLPLPSSAMVLKMSVKSPVNVVKRSP----DDSDDE 192

Query: 1174 KPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXXSNTSEETDDSEDAKPLLSRFQSN 995
            KPLS K+    +  A +  +  P                     DDS++ KPL+S+FQ N
Sbjct: 193  KPLSQKFPQKSSSGAVAGTSIKPAY-------------------DDSDEEKPLVSKFQQN 233

Query: 994  VIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGEKRPLSDANPAESSSSKKA 815
                SS K  NG                  I  K  A   GE + L         + K  
Sbjct: 234  ---GSSKKNLNG----------ELSLKANHILKKRLA---GEPQML---------AKKPK 268

Query: 814  KLTGTSVSAKVKQEVSVSKESKE--DDNDHTPIAQRMKKSPS-SNSASINQ-NTLLKTAS 647
              T  S S+KVK EV V  E+ E  DD D  PI+QRMKKS S S  AS  + +   K  S
Sbjct: 269  PSTDPSPSSKVKIEVDVKAETSEKGDDEDDLPISQRMKKSASVSGQASAKKISVKTKVVS 328

Query: 646  SSFKKSNLTMNKK-RDSKFSKSLKAPVGSGGEQKWTTLQHNGVIFPPLYKPHGIKMLYKG 470
            SSFKK+     K+ +  K SKS K P GSG  QKWTTL+HNGVIFPP YKPHG+KMLY G
Sbjct: 329  SSFKKTGKNTKKEIKKLKQSKSAKGPPGSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYNG 388

Query: 469  QPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLILGKNHIIKKFEDCDFTPIY 290
             PVDLTPEQEEVATMFAVMKDT+YA K +F++NFM+DWR+ILGKNHIIKKFE CD TPIY
Sbjct: 389  LPVDLTPEQEEVATMFAVMKDTEYATKPKFVENFMNDWRVILGKNHIIKKFELCDLTPIY 448

Query: 289  EWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 110
            EWHLKEKEKKK M++               KYMWAIVDGVKEKVGNFRVEPPGLFRGRGE
Sbjct: 449  EWHLKEKEKKKHMSAEEKKALKEEKAKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 508

Query: 109  HPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            HPKMGKLK+RI P DITINIGK+ P+P+CPI G+RW
Sbjct: 509  HPKMGKLKRRIFPKDITINIGKNAPVPECPILGQRW 544


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  383 bits (983), Expect = e-103
 Identities = 204/401 (50%), Positives = 250/401 (62%), Gaps = 3/401 (0%)
 Frame = -3

Query: 1195 SENSDDDKPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXXSNTSEETDDSEDAKPL 1016
            SE+SDD KPLS+++S   ++   +  ++                  +  E +DS+D KPL
Sbjct: 163  SEDSDDGKPLSLRHSASSSKGNTNQVSKE----------------GSKPENEDSDDEKPL 206

Query: 1015 LSRFQ-SNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGEKRPLSDANPA 839
             SRF   + +G S++K  +  +                            KRP  D   +
Sbjct: 207  SSRFPLKSGVGESTSKAYDSDDDKPLAKKLQHNGSAMRDGQPNKYSNMSNKRPPGDIKSS 266

Query: 838  ESSSSKKAKLTGTSVSAKVKQ-EVSVSKESKEDDNDHTPIAQRMKKSPSSNSASINQNTL 662
               S KK KL+  +     KQ  V    ++++DD+DH PI+QR+KKSP+S S S +    
Sbjct: 267  NQLSVKKPKLSSVTAPTNKKQASVKPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKT 326

Query: 661  LKTASSSFKKSNLTMNK-KRDSKFSKSLKAPVGSGGEQKWTTLQHNGVIFPPLYKPHGIK 485
             K  SSS KK N    K  ++SK+SKS K P  SG  +KW  L+HNGVIFPP YKPHGIK
Sbjct: 327  TKVVSSSVKKVNKKSKKVMKNSKYSKSSKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIK 386

Query: 484  MLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLILGKNHIIKKFEDCD 305
            MLYKG+PVDLTPEQEEVATMFAVM DTDY  K +F +NF  DW+ ILGKNH+I+  E+CD
Sbjct: 387  MLYKGKPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENFFGDWKKILGKNHVIQNLENCD 446

Query: 304  FTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLF 125
            F+PIYEWH  EKEKKKQMT+               KYMWA VDG KEKVGNFRVEPPGLF
Sbjct: 447  FSPIYEWHQSEKEKKKQMTTEEKKALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLF 506

Query: 124  RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            RGRGEHPKMGKLKKRIRP DITINIGKD PIP+CP+PGERW
Sbjct: 507  RGRGEHPKMGKLKKRIRPCDITINIGKDAPIPECPVPGERW 547


>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
            gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
            putative [Ricinus communis]
          Length = 891

 Score =  382 bits (981), Expect = e-103
 Identities = 215/402 (53%), Positives = 258/402 (64%), Gaps = 5/402 (1%)
 Frame = -3

Query: 1192 ENSDDDKPLSVKYSGVINRSAFSHAAEAPQXXXXXXXXXXXXXSNTSEETDDSEDAKPLL 1013
            E+S+DD PLS +  G  N +  S    AP+                 ++ D  +D  PL 
Sbjct: 150  EDSEDDLPLSARRKG--NTNNVSKVVTAPKRV---------------KDEDSDDDKVPLC 192

Query: 1012 SRF-QSNVIGVSSAKVSNGPEKPXXXXXXXXXXXXXGISSKTTAPKGGEKRPLSDANPAE 836
            SRF   +  G S  K +N  EK                  +  AP    KRPL  AN +E
Sbjct: 193  SRFPMKSTAGTSGNKPNNISEKKPLPSKVQQNGSTSK-DKQQKAPLIPTKRPLDKANSSE 251

Query: 835  SSSSKKAKLTGTSVSAKVKQEVSVSKESKEDDNDHTPIAQRMKKSPSSNSA-SINQNTLL 659
             SS KK KL+  S   KVKQ    + +++EDD D  PIAQR K   SS S  S  +   +
Sbjct: 252  QSSIKKPKLSAGSTITKVKQ---ATVKAEEDDPDDIPIAQRKKSLGSSESKLSSAKQKAI 308

Query: 658  KTASSSFKKSNLTMNKK--RDSKFSKSLKA-PVGSGGEQKWTTLQHNGVIFPPLYKPHGI 488
            K  SSSFKK  +  NKK  +++K+SKS K  P  + G++KWTTL HNGVIFPP YKPHGI
Sbjct: 309  KVVSSSFKKP-IKKNKKQMKNTKYSKSTKVQPSSTDGQKKWTTLIHNGVIFPPPYKPHGI 367

Query: 487  KMLYKGQPVDLTPEQEEVATMFAVMKDTDYALKKQFIKNFMDDWRLILGKNHIIKKFEDC 308
            K+LYKG+PVDL PEQEEVATMFAVMKDTDY  K +F++NF +DWR +LG+NH+I+K EDC
Sbjct: 368  KILYKGRPVDLAPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKLLGRNHVIQKLEDC 427

Query: 307  DFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGL 128
            DFTPIYEWH +EKEKKKQM++               KYMWAIVDGVKEKVGNFRVEPP L
Sbjct: 428  DFTPIYEWHEREKEKKKQMSTEEKKAQKEEKLRQEEKYMWAIVDGVKEKVGNFRVEPPAL 487

Query: 127  FRGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERW 2
            FRGRGEHPKMGKLKKRI+P+DITINIGKD PIP+CPIPGE W
Sbjct: 488  FRGRGEHPKMGKLKKRIQPSDITINIGKDAPIPECPIPGESW 529