BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00023932
         (232 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   109   4e-22
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   108   6e-22
emb|CBI40277.3| unnamed protein product [Vitis vinifera]              108   1e-21
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   108   1e-21
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   108   1e-21
ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi...   107   2e-21
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   106   3e-21
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   106   3e-21
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   105   5e-21
ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A...   105   8e-21
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   105   8e-21
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not...   104   1e-20
gb|ADE77570.1| unknown [Picea sitchensis]                             104   1e-20
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus...   103   2e-20
ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutr...   102   5e-20
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   102   7e-20
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   101   1e-19
dbj|BAN19962.1| RNA polymerase II, partial [Echinochloa phyllopo...   100   2e-19
ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutr...   100   3e-19
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...    99   6e-19

>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  109 bits (272), Expect = 4e-22
 Identities = 51/58 (87%), Positives = 55/58 (94%)
 Frame = +1

Query: 22  DPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           D  GY+S EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 139 DSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 196


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  108 bits (271), Expect = 6e-22
 Identities = 51/59 (86%), Positives = 55/59 (93%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +D  GY+S EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP IHIN
Sbjct: 138 SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHIN 196


>emb|CBI40277.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score =  108 bits (269), Expect = 1e-21
 Identities = 50/59 (84%), Positives = 56/59 (94%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +D  GY+S ++KGI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 26  SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 84


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  108 bits (269), Expect = 1e-21
 Identities = 50/59 (84%), Positives = 56/59 (94%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +D  GY+S ++KGI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 138 SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 196


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  108 bits (269), Expect = 1e-21
 Identities = 50/59 (84%), Positives = 56/59 (94%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +D  GY+S ++KGI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 138 SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 196


>ref|XP_001765827.1| predicted protein [Physcomitrella patens]
           gi|162683004|gb|EDQ69418.1| predicted protein
           [Physcomitrella patens]
          Length = 324

 Score =  107 bits (266), Expect = 2e-21
 Identities = 50/64 (78%), Positives = 58/64 (90%)
 Frame = +1

Query: 4   ASAMSADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQ 183
           A+  +AD GG+ES + +GILIVKLR+GQEL+LRAIARKGIGKDHAKWSPAATVTF YEP+
Sbjct: 137 AAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFQYEPE 196

Query: 184 IHIN 195
           IHIN
Sbjct: 197 IHIN 200


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
           gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 3-like [Citrus
           sinensis] gi|557524889|gb|ESR36195.1| hypothetical
           protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  106 bits (265), Expect = 3e-21
 Identities = 51/59 (86%), Positives = 56/59 (94%), Gaps = 1/59 (1%)
 Frame = +1

Query: 22  DPGGYESPEQ-KGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           DP GY+S +Q +GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 139 DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cicer arietinum]
          Length = 319

 Score =  106 bits (265), Expect = 3e-21
 Identities = 51/60 (85%), Positives = 54/60 (90%)
 Frame = +1

Query: 16  SADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           SADP   ES + +GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP IHIN
Sbjct: 138 SADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHIN 197


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  105 bits (263), Expect = 5e-21
 Identities = 50/59 (84%), Positives = 54/59 (91%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +D  GYE+ EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP I IN
Sbjct: 138 SDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRIN 196


>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
           gi|548856809|gb|ERN14637.1| hypothetical protein
           AMTR_s00038p00194050 [Amborella trichopoda]
          Length = 324

 Score =  105 bits (261), Expect = 8e-21
 Identities = 48/58 (82%), Positives = 54/58 (93%)
 Frame = +1

Query: 22  DPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           D  G+++ EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSP ATVTFMYEP+IHIN
Sbjct: 143 DSNGFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPGATVTFMYEPEIHIN 200


>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  105 bits (261), Expect = 8e-21
 Identities = 51/59 (86%), Positives = 53/59 (89%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +D  G ES EQKGI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP I IN
Sbjct: 138 SDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRIN 196


>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 588

 Score =  104 bits (260), Expect = 1e-20
 Identities = 50/59 (84%), Positives = 54/59 (91%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +DP G ES +Q+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP I IN
Sbjct: 138 SDPAGDESGDQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRIN 196


>gb|ADE77570.1| unknown [Picea sitchensis]
          Length = 330

 Score =  104 bits (260), Expect = 1e-20
 Identities = 50/65 (76%), Positives = 57/65 (87%)
 Frame = +1

Query: 1   IASAMSADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 180
           +A   +AD   +++ EQ+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP
Sbjct: 141 VAVDRAADMNVFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 200

Query: 181 QIHIN 195
            IHIN
Sbjct: 201 DIHIN 205


>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  103 bits (258), Expect = 2e-20
 Identities = 47/59 (79%), Positives = 54/59 (91%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +DP   +S E +G++IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IH+N
Sbjct: 138 SDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHLN 196


>ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutrema salsugineum]
           gi|557089698|gb|ESQ30406.1| hypothetical protein
           EUTSA_v10011661mg [Eutrema salsugineum]
          Length = 320

 Score =  102 bits (254), Expect = 5e-20
 Identities = 48/60 (80%), Positives = 54/60 (90%)
 Frame = +1

Query: 16  SADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           + DP   +S EQ+GI+IVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP I+IN
Sbjct: 139 ATDPSATDSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDININ 198


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Glycine max]
          Length = 319

 Score =  102 bits (253), Expect = 7e-20
 Identities = 47/59 (79%), Positives = 53/59 (89%)
 Frame = +1

Query: 19  ADPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +DP   +S   +GI+IVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 139 SDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Glycine max]
          Length = 320

 Score =  101 bits (251), Expect = 1e-19
 Identities = 48/60 (80%), Positives = 55/60 (91%), Gaps = 1/60 (1%)
 Frame = +1

Query: 19  ADPGGYESPEQ-KGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           +DP   +SP+  +GI+IVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP+IHIN
Sbjct: 139 SDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 198


>dbj|BAN19962.1| RNA polymerase II, partial [Echinochloa phyllopogon]
          Length = 257

 Score =  100 bits (249), Expect = 2e-19
 Identities = 48/55 (87%), Positives = 51/55 (92%)
 Frame = +1

Query: 31  GYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           G++  EQ+GILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP I IN
Sbjct: 84  GFDPNEQRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRIN 138


>ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutrema salsugineum]
           gi|557110719|gb|ESQ51010.1| hypothetical protein
           EUTSA_v10022739mg [Eutrema salsugineum]
          Length = 369

 Score =  100 bits (248), Expect = 3e-19
 Identities = 47/58 (81%), Positives = 53/58 (91%)
 Frame = +1

Query: 22  DPGGYESPEQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQIHIN 195
           D  G +S EQ+GI+IVKLRRGQEL+LRAIARKGIGKDHAKWSPA+TVTFMYEP I+IN
Sbjct: 190 DSSGTDSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPASTVTFMYEPDININ 247


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
           [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
           DNA-directed RNA polymerase II 36 kDa polypeptide B
           family protein [Populus trichocarpa]
          Length = 323

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 49/64 (76%), Positives = 53/64 (82%), Gaps = 5/64 (7%)
 Frame = +1

Query: 19  ADPGGYESP-----EQKGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPQ 183
           +DP     P      Q+GI+IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+
Sbjct: 138 SDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPE 197

Query: 184 IHIN 195
           IHIN
Sbjct: 198 IHIN 201