BLASTX nr result
ID: Zingiber24_contig00023411
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00023411
(1024 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFW58817.1| hypothetical protein ZEAMMB73_714278 [Zea mays] 206 1e-50
ref|NP_001167848.1| uncharacterized protein LOC100381550 [Zea ma... 206 1e-50
ref|XP_004976180.1| PREDICTED: endoribonuclease Dicer homolog 4-... 201 3e-49
ref|XP_004976179.1| PREDICTED: endoribonuclease Dicer homolog 4-... 201 3e-49
ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [S... 198 3e-48
ref|XP_006653591.1| PREDICTED: endoribonuclease Dicer homolog 4-... 197 4e-48
ref|XP_003581414.1| PREDICTED: endoribonuclease Dicer homolog 4-... 196 2e-47
gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indi... 196 2e-47
dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica G... 196 2e-47
dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group] 196 2e-47
sp|A7LFZ6.1|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homo... 196 2e-47
ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group] g... 196 2e-47
emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group] gi... 196 2e-47
gb|EMT06391.1| Endoribonuclease Dicer-4-like protein [Aegilops t... 190 7e-46
gb|EMS51466.1| Endoribonuclease Dicer-like protein 4 [Triticum u... 189 2e-45
ref|XP_006343691.1| PREDICTED: dicer-like protein 4-like isoform... 167 6e-39
ref|XP_006343690.1| PREDICTED: dicer-like protein 4-like isoform... 167 6e-39
ref|NP_001266210.1| dicer-like protein 4 [Solanum lycopersicum] ... 167 6e-39
gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata] 164 5e-38
ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis... 162 3e-37
>gb|AFW58817.1| hypothetical protein ZEAMMB73_714278 [Zea mays]
Length = 306
Score = 206 bits (524), Expect = 1e-50
Identities = 118/268 (44%), Positives = 165/268 (61%), Gaps = 7/268 (2%)
Frame = +1
Query: 4 CQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKAR 183
CQ+ GF LGLPEP K + + VKVE++ING ++ ++N+NSK AR++A+QE LS LK
Sbjct: 55 CQYNGFDLGLPEPTKYNGEFHVKVEVNINGKMISCTAANRNSKDARKVAAQETLSKLKNY 114
Query: 184 GYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSGR 360
GYK K K+L+E+L ST K E+ LIG+DEEPI V D++ + L I +QS+
Sbjct: 115 GYKHKRKSLEEILRSTTKKESELIGYDEEPINVEDDIDMQMNNLLINGERTSIQST---- 170
Query: 361 GNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNV----QTSESSANEKHTN 528
+ ++VD N ++++ M+N T + + E H +
Sbjct: 171 ----------AGDNKVD------KNDANSGRNNKSNVVMQNGCLPRGATDKINQKEYHGD 214
Query: 529 TVFSVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVG--AEYLECF 702
V+K A+S L E+CAA+YW PP FE C ++GPSHL+ FT KV++EI G LEC+
Sbjct: 215 ---MVRKTARSFLYELCAANYWKPPEFELCNDEGPSHLRKFTCKVLIEITGTSVSLLECY 271
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
DPK QK+AAQ+HAAEGALWYLKH GY+
Sbjct: 272 SDPKLQKRAAQEHAAEGALWYLKHLGYL 299
>ref|NP_001167848.1| uncharacterized protein LOC100381550 [Zea mays]
gi|223944409|gb|ACN26288.1| unknown [Zea mays]
Length = 264
Score = 206 bits (524), Expect = 1e-50
Identities = 118/268 (44%), Positives = 165/268 (61%), Gaps = 7/268 (2%)
Frame = +1
Query: 4 CQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKAR 183
CQ+ GF LGLPEP K + + VKVE++ING ++ ++N+NSK AR++A+QE LS LK
Sbjct: 13 CQYNGFDLGLPEPTKYNGEFHVKVEVNINGKMISCTAANRNSKDARKVAAQETLSKLKNY 72
Query: 184 GYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSGR 360
GYK K K+L+E+L ST K E+ LIG+DEEPI V D++ + L I +QS+
Sbjct: 73 GYKHKRKSLEEILRSTTKKESELIGYDEEPINVEDDIDMQMNNLLINGERTSIQST---- 128
Query: 361 GNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNV----QTSESSANEKHTN 528
+ ++VD N ++++ M+N T + + E H +
Sbjct: 129 ----------AGDNKVD------KNDANSGRNNKSNVVMQNGCLPRGATDKINQKEYHGD 172
Query: 529 TVFSVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVG--AEYLECF 702
V+K A+S L E+CAA+YW PP FE C ++GPSHL+ FT KV++EI G LEC+
Sbjct: 173 ---MVRKTARSFLYELCAANYWKPPEFELCNDEGPSHLRKFTCKVLIEITGTSVSLLECY 229
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
DPK QK+AAQ+HAAEGALWYLKH GY+
Sbjct: 230 SDPKLQKRAAQEHAAEGALWYLKHLGYL 257
>ref|XP_004976180.1| PREDICTED: endoribonuclease Dicer homolog 4-like isoform X2 [Setaria
italica]
Length = 1327
Score = 201 bits (512), Expect = 3e-49
Identities = 117/273 (42%), Positives = 168/273 (61%), Gaps = 11/273 (4%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+PIK + VKVE+++NG ++ ++N+NSK AR++A+Q+ LS LK
Sbjct: 1058 LCQCNGFDLGLPKPIKADGEFHVKVEVNVNGKMISCTAANQNSKHARKLAAQDTLSKLKN 1117
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPIVMVDLEHGLEKLQIQNSGDILQSSDSGR 360
GYK KSK+L+E+L + K E LIG+DEEPI + + LE +Q +G++ ++ G
Sbjct: 1118 YGYKHKSKSLEEILRTATKKEPELIGYDEEPIKVDGVP--LEMKNLQMNGEMEENIFFGN 1175
Query: 361 ---------GNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSAN 513
+ + ++K R D RI +S + TQ + ++ +
Sbjct: 1176 NEAFFIGRSATSIQRTGEDNKVDRNDANNGRINKSNVV-----TQNGCLPRGEAAKINKK 1230
Query: 514 EKHTNTVFSVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVG--AE 687
E H + V K A+S L E+CAA+YW PP FE CK++GPSHL+ FT KV+V+I+G A
Sbjct: 1231 EYHGD---MVHKTARSFLYELCAANYWKPPEFELCKDEGPSHLRKFTCKVLVQIMGPSAT 1287
Query: 688 YLECFGDPKPQKKAAQDHAAEGALWYLKHTGYI 786
LEC+ DPK QKKAAQ+HAA+GALW LK GY+
Sbjct: 1288 LLECYSDPKLQKKAAQEHAAQGALWCLKQLGYL 1320
>ref|XP_004976179.1| PREDICTED: endoribonuclease Dicer homolog 4-like isoform X1 [Setaria
italica]
Length = 1632
Score = 201 bits (512), Expect = 3e-49
Identities = 117/273 (42%), Positives = 168/273 (61%), Gaps = 11/273 (4%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+PIK + VKVE+++NG ++ ++N+NSK AR++A+Q+ LS LK
Sbjct: 1363 LCQCNGFDLGLPKPIKADGEFHVKVEVNVNGKMISCTAANQNSKHARKLAAQDTLSKLKN 1422
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPIVMVDLEHGLEKLQIQNSGDILQSSDSGR 360
GYK KSK+L+E+L + K E LIG+DEEPI + + LE +Q +G++ ++ G
Sbjct: 1423 YGYKHKSKSLEEILRTATKKEPELIGYDEEPIKVDGVP--LEMKNLQMNGEMEENIFFGN 1480
Query: 361 ---------GNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSAN 513
+ + ++K R D RI +S + TQ + ++ +
Sbjct: 1481 NEAFFIGRSATSIQRTGEDNKVDRNDANNGRINKSNVV-----TQNGCLPRGEAAKINKK 1535
Query: 514 EKHTNTVFSVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVG--AE 687
E H + V K A+S L E+CAA+YW PP FE CK++GPSHL+ FT KV+V+I+G A
Sbjct: 1536 EYHGD---MVHKTARSFLYELCAANYWKPPEFELCKDEGPSHLRKFTCKVLVQIMGPSAT 1592
Query: 688 YLECFGDPKPQKKAAQDHAAEGALWYLKHTGYI 786
LEC+ DPK QKKAAQ+HAA+GALW LK GY+
Sbjct: 1593 LLECYSDPKLQKKAAQEHAAQGALWCLKQLGYL 1625
>ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
gi|241939333|gb|EES12478.1| hypothetical protein
SORBIDRAFT_06g022180 [Sorghum bicolor]
Length = 698
Score = 198 bits (503), Expect = 3e-48
Identities = 116/278 (41%), Positives = 171/278 (61%), Gaps = 16/278 (5%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
+CQ+ GF LGLP+P + + + VKVE++I+G ++ ++N+NSK AR++A+QEAL LK
Sbjct: 430 ICQYNGFELGLPKPTEDNGEFHVKVEVNIDGKMISCTAANRNSKDARKVAAQEALLKLKN 489
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPIVMVDLEHGLEKLQIQNSGDILQSSDSGR 360
GYK K K+L+E+L +T K E+ LIG+DEEPI + D +Q++N L +
Sbjct: 490 NGYKHKRKSLEEILRATTKKESELIGYDEEPINVED------DIQMKN----LLINGEME 539
Query: 361 GNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESS----------- 507
GN + ++ V L G T + + D++ ++ NN + ++S+
Sbjct: 540 GN------IFFQNKEVSLNGRSETSIQSTTGDNKVDKNDANNGRNNKSNVVVQNGCLPRG 593
Query: 508 ANEKHTNTVF---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIV 678
A +K + V+K A+S L E+CAA+YW PP FE CK +GPSHL+ FT KV+++I
Sbjct: 594 ATDKTNQREYHGDMVRKTARSFLYELCAANYWKPPDFELCKGEGPSHLRKFTCKVLIQIT 653
Query: 679 G--AEYLECFGDPKPQKKAAQDHAAEGALWYLKHTGYI 786
G A LEC+ DPK QKKAA +HAAEGALWYLK GY+
Sbjct: 654 GTSATLLECYSDPKLQKKAAHEHAAEGALWYLKQLGYL 691
>ref|XP_006653591.1| PREDICTED: endoribonuclease Dicer homolog 4-like [Oryza brachyantha]
Length = 1633
Score = 197 bits (502), Expect = 4e-48
Identities = 114/268 (42%), Positives = 161/268 (60%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+P+K + V+VE++I + ++N+NSKAAR+ A+QE LS LK+
Sbjct: 1363 LCQCNGFELGLPKPVKADGEFHVRVEVNIKSKVIICTAANRNSKAARKFAAQETLSKLKS 1422
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GYK ++K+L+E+L+ +K E+ LIG++E+PI V D+ ++ L I D S +
Sbjct: 1423 YGYKHRNKSLEEILVVARKRESELIGYNEDPIDVESDISVKIKSLHIHEERDANISFE-- 1480
Query: 358 RGNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
N C+ +SK AG ++ ++ N Q + S A E V+
Sbjct: 1481 --NTETSCTGSSKILSQRRAGHIRPDNYDVDNGRNNQPKLAMQSGCLPSEATETSNKKVY 1538
Query: 538 ---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVG--AEYLECF 702
V K A+S L E+CAA+YW PP F+ CKE+GPSHL FTYKV+VEI G A LEC
Sbjct: 1539 HGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLPKFTYKVVVEIKGTSATLLECH 1598
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D K QKKAAQ+HAA+GA+W LK G++
Sbjct: 1599 SDAKHQKKAAQEHAAQGAVWCLKQLGHL 1626
>ref|XP_003581414.1| PREDICTED: endoribonuclease Dicer homolog 4-like [Brachypodium
distachyon]
Length = 1627
Score = 196 bits (497), Expect = 2e-47
Identities = 116/268 (43%), Positives = 161/268 (60%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ LGLP+P+K Y VKVE++IN ++ ++N+NSK AR++A++E LS LK
Sbjct: 1356 LCQCNELELGLPKPMKADGEYHVKVEVNINSTMISCTAANRNSKVARKLAARETLSKLKN 1415
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GYK K+K+L+E+L +K E L+G++EEPI V D+ ++ LQI D ++
Sbjct: 1416 YGYKHKNKSLEEILHDARKKEPELLGYNEEPIKVEADISVQMKSLQISEERD----ANFS 1471
Query: 358 RGNDLLKCSVNSKSSRVDLAGAR--ITESCNISNDHQTQQSMRNN-VQTSESSANEKHTN 528
N + +SK+S AG + N ++Q +M+N + + N K
Sbjct: 1472 FKNMEVPIGGSSKTSNQRTAGDTKIFKDDVNNERNNQLMVAMQNGCLLRGTTQKNNKKEY 1531
Query: 529 TVFSVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECF 702
V K AKS L E+CAASYW PP F+ C E+GPSHL+ FTYKVIV+I G LEC+
Sbjct: 1532 KGDMVHKTAKSFLFELCAASYWKPPEFQLCIEEGPSHLRRFTYKVIVQIRGPSETLLECY 1591
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D K QKKAAQ+HAA+GALWYLK Y+
Sbjct: 1592 SDAKLQKKAAQEHAAQGALWYLKQLEYL 1619
>gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group]
Length = 1576
Score = 196 bits (497), Expect = 2e-47
Identities = 114/268 (42%), Positives = 162/268 (60%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+P+K Y VKVE++I + ++N+NSKAAR+ A+QE LS LK
Sbjct: 1311 LCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 1370
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GYK ++K+L+E+L+ +K E+ LIG++E+PI V D+ ++ I Q++++
Sbjct: 1371 YGYKHRNKSLEEILIVARKRESELIGYNEDPIDVEADISVKMKSPHIHEENIPFQNTET- 1429
Query: 358 RGNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
+ +SK +AG + +++N Q + S A EK V+
Sbjct: 1430 ------SFTRSSKFHNQIIAG---SGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKKVY 1480
Query: 538 ---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECF 702
V K A+S L E+CAA+YW PP F+ CKE+GPSHL+ FTYKV+VEI GA LEC
Sbjct: 1481 HGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECH 1540
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D K QKKAAQ+HAA+GALW LK G++
Sbjct: 1541 SDGKLQKKAAQEHAAQGALWCLKQLGHL 1568
>dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1058
Score = 196 bits (497), Expect = 2e-47
Identities = 114/268 (42%), Positives = 162/268 (60%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+P+K Y VKVE++I + ++N+NSKAAR+ A+QE LS LK
Sbjct: 793 LCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 852
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GYK ++K+L+E+L+ +K E+ LIG++E+PI V D+ ++ I Q++++
Sbjct: 853 YGYKHRNKSLEEILIVARKRESELIGYNEDPIDVEADISVKMKSPHIHEENIPFQNTET- 911
Query: 358 RGNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
+ +SK +AG + +++N Q + S A EK V+
Sbjct: 912 ------SFTRSSKFHNQIIAG---SGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKKVY 962
Query: 538 ---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECF 702
V K A+S L E+CAA+YW PP F+ CKE+GPSHL+ FTYKV+VEI GA LEC
Sbjct: 963 HGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECH 1022
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D K QKKAAQ+HAA+GALW LK G++
Sbjct: 1023 SDGKLQKKAAQEHAAQGALWCLKQLGHL 1050
>dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group]
Length = 1631
Score = 196 bits (497), Expect = 2e-47
Identities = 114/268 (42%), Positives = 162/268 (60%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+P+K Y VKVE++I + ++N+NSKAAR+ A+QE LS LK
Sbjct: 1366 LCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 1425
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GYK ++K+L+E+L+ +K E+ LIG++E+PI V D+ ++ I Q++++
Sbjct: 1426 YGYKHRNKSLEEILIVARKRESELIGYNEDPIDVEADISVKMKSPHIHEENIPFQNTET- 1484
Query: 358 RGNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
+ +SK +AG + +++N Q + S A EK V+
Sbjct: 1485 ------SFTRSSKFHNQIIAG---SGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKKVY 1535
Query: 538 ---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECF 702
V K A+S L E+CAA+YW PP F+ CKE+GPSHL+ FTYKV+VEI GA LEC
Sbjct: 1536 HGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECH 1595
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D K QKKAAQ+HAA+GALW LK G++
Sbjct: 1596 SDGKLQKKAAQEHAAQGALWCLKQLGHL 1623
>sp|A7LFZ6.1|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName:
Full=Dicer-like protein 4; Short=OsDCL4; AltName:
Full=Protein SHOOT ORGANIZATION 1
gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza
sativa Japonica Group]
Length = 1657
Score = 196 bits (497), Expect = 2e-47
Identities = 114/268 (42%), Positives = 162/268 (60%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+P+K Y VKVE++I + ++N+NSKAAR+ A+QE LS LK
Sbjct: 1392 LCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 1451
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GYK ++K+L+E+L+ +K E+ LIG++E+PI V D+ ++ I Q++++
Sbjct: 1452 YGYKHRNKSLEEILIVARKRESELIGYNEDPIDVEADISVKMKSPHIHEENIPFQNTET- 1510
Query: 358 RGNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
+ +SK +AG + +++N Q + S A EK V+
Sbjct: 1511 ------SFTRSSKFHNQIIAG---SGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKKVY 1561
Query: 538 ---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECF 702
V K A+S L E+CAA+YW PP F+ CKE+GPSHL+ FTYKV+VEI GA LEC
Sbjct: 1562 HGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECH 1621
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D K QKKAAQ+HAA+GALW LK G++
Sbjct: 1622 SDGKLQKKAAQEHAAQGALWCLKQLGHL 1649
>ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group]
gi|113564849|dbj|BAF15192.1| Os04g0509300, partial [Oryza
sativa Japonica Group]
Length = 1090
Score = 196 bits (497), Expect = 2e-47
Identities = 114/268 (42%), Positives = 162/268 (60%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+P+K Y VKVE++I + ++N+NSKAAR+ A+QE LS LK
Sbjct: 825 LCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 884
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GYK ++K+L+E+L+ +K E+ LIG++E+PI V D+ ++ I Q++++
Sbjct: 885 YGYKHRNKSLEEILIVARKRESELIGYNEDPIDVEADISVKMKSPHIHEENIPFQNTET- 943
Query: 358 RGNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
+ +SK +AG + +++N Q + S A EK V+
Sbjct: 944 ------SFTRSSKFHNQIIAG---SGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKKVY 994
Query: 538 ---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECF 702
V K A+S L E+CAA+YW PP F+ CKE+GPSHL+ FTYKV+VEI GA LEC
Sbjct: 995 HGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECH 1054
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D K QKKAAQ+HAA+GALW LK G++
Sbjct: 1055 SDGKLQKKAAQEHAAQGALWCLKQLGHL 1082
>emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group]
gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2
[Oryza sativa Indica Group]
Length = 1604
Score = 196 bits (497), Expect = 2e-47
Identities = 114/268 (42%), Positives = 162/268 (60%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ GF LGLP+P+K Y VKVE++I + ++N+NSKAAR+ A+QE LS LK
Sbjct: 1339 LCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 1398
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GYK ++K+L+E+L+ +K E+ LIG++E+PI V D+ ++ I Q++++
Sbjct: 1399 YGYKHRNKSLEEILIVARKRESELIGYNEDPIDVEADISVKMKSPHIHEENIPFQNTET- 1457
Query: 358 RGNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
+ +SK +AG + +++N Q + S A EK V+
Sbjct: 1458 ------SFTRSSKFHNQIIAG---SGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKKVY 1508
Query: 538 ---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECF 702
V K A+S L E+CAA+YW PP F+ CKE+GPSHL+ FTYKV+VEI GA LEC
Sbjct: 1509 HGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECH 1568
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D K QKKAAQ+HAA+GALW LK G++
Sbjct: 1569 SDGKLQKKAAQEHAAQGALWCLKQLGHL 1596
>gb|EMT06391.1| Endoribonuclease Dicer-4-like protein [Aegilops tauschii]
Length = 1493
Score = 190 bits (483), Expect = 7e-46
Identities = 111/269 (41%), Positives = 160/269 (59%), Gaps = 7/269 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ LGLPEP+K Y VKVE++IN ++ ++N+NSK AR+ A+QE LS LK
Sbjct: 1223 LCQCHELELGLPEPMKADGEYHVKVEVNINSQVISSAAANRNSKVARKFAAQETLSKLKN 1282
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GY K+K+L+E+L +K E L+G++EEPI V D+ + L+I D ++ S
Sbjct: 1283 YGYTHKNKSLEEILRDARKKEPELLGYNEEPIKVEADISAEMNNLKIGKERD---ANISF 1339
Query: 358 RGNDL-LKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTV 534
+ ++ ++ ++ + S R AG + ++S + Q + +K+
Sbjct: 1340 QNTEISIRGTLRTSSQRT--AGNTMFSKDDVSIERNNQLKVAKQNACLPKGTTQKNIRKE 1397
Query: 535 F---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLEC 699
+ V K AKS L E+CA SYW PP FE CKE+GPSHL+ FTYKV V+I G LEC
Sbjct: 1398 YHGDMVNKTAKSFLFEVCAVSYWKPPEFELCKEEGPSHLRRFTYKVTVQIRGPSETLLEC 1457
Query: 700 FGDPKPQKKAAQDHAAEGALWYLKHTGYI 786
+ D + QKKAAQ+HAA+GALWYL+ GY+
Sbjct: 1458 YSDAQLQKKAAQEHAAQGALWYLRQHGYL 1486
>gb|EMS51466.1| Endoribonuclease Dicer-like protein 4 [Triticum urartu]
Length = 1512
Score = 189 bits (480), Expect = 2e-45
Identities = 110/268 (41%), Positives = 153/268 (57%), Gaps = 6/268 (2%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ LGLPEP+K Y VKVE++IN ++ ++N+NSK AR+ A+QE LS LK
Sbjct: 1242 LCQSHELELGLPEPMKADGEYHVKVEVNINSQVISSAAANRNSKVARKFAAQETLSKLKN 1301
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPI-VMVDLEHGLEKLQIQNSGDILQSSDSG 357
GY K+K+L+E+L +K E L+G++EEPI V D+ L+I D ++
Sbjct: 1302 YGYTHKNKSLEEILRDARKKEPELLGYNEEPIKVEADISAETNNLKIGKERD----ANIS 1357
Query: 358 RGNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
N + ++S AG + ++S + Q + +K+ +
Sbjct: 1358 FQNTAISIRGTLRTSSQRTAGNTMFSKDDVSIERNNQLKVAKQNACLPKGTTQKNIRKEY 1417
Query: 538 ---SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECF 702
V K AKS L E+CA SYW PP FE CKE+GPSHL+ FTYKV V+I G LEC+
Sbjct: 1418 HGDMVNKTAKSFLFEVCAVSYWIPPEFELCKEEGPSHLRRFTYKVTVQIRGPSETLLECY 1477
Query: 703 GDPKPQKKAAQDHAAEGALWYLKHTGYI 786
D + QKKAAQ+HAA+GALWYL+ GY+
Sbjct: 1478 SDAQLQKKAAQEHAAQGALWYLRQHGYL 1505
>ref|XP_006343691.1| PREDICTED: dicer-like protein 4-like isoform X2 [Solanum tuberosum]
Length = 1621
Score = 167 bits (423), Expect = 6e-39
Identities = 107/272 (39%), Positives = 151/272 (55%), Gaps = 10/272 (3%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ G+ L P K +LV+ ++ V + N N K+A+RMA+Q+ S LKA
Sbjct: 1371 LCQSFGWNLKFL-PSKKDSKFLVEARVNGENVSAAASALNINKKSAQRMAAQKVCSSLKA 1429
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPIVMVDLEHGLEKLQIQNSGDILQSSDSGR 360
+GY+ KSK+L++VL + K EA+LIG+DE P V+ + D+ + S R
Sbjct: 1430 QGYRPKSKSLEQVLKTAIKMEAKLIGYDETPCVLTT-----------SCDDLDKHETSER 1478
Query: 361 GNDLLKCSVNSKSSRVDLAGARITESCN---------ISNDHQTQQSMRNNVQTSESSAN 513
DL VN K +R SCN +S + Q + + ++ S +
Sbjct: 1479 DCDLKVFPVNEKLAR----------SCNFKFKSMRKLLSPEASVQCNSDQTIMSNGSKED 1528
Query: 514 EKHTNTVFSVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEI-VGAEY 690
K T S + AKSRL EICAA+ W PPLFECCKE GPSHLK FT++V+VEI +
Sbjct: 1529 SKATGG--SKTESAKSRLHEICAANCWKPPLFECCKETGPSHLKEFTFRVVVEIEETSRV 1586
Query: 691 LECFGDPKPQKKAAQDHAAEGALWYLKHTGYI 786
+E +G+ + +KK A +HAAEGALW+LK GY+
Sbjct: 1587 IESYGEAQAKKKDAAEHAAEGALWFLKQEGYL 1618
>ref|XP_006343690.1| PREDICTED: dicer-like protein 4-like isoform X1 [Solanum tuberosum]
Length = 1622
Score = 167 bits (423), Expect = 6e-39
Identities = 107/272 (39%), Positives = 151/272 (55%), Gaps = 10/272 (3%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ G+ L P K +LV+ ++ V + N N K+A+RMA+Q+ S LKA
Sbjct: 1372 LCQSFGWNLKFL-PSKKDSKFLVEARVNGENVSAAASALNINKKSAQRMAAQKVCSSLKA 1430
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPIVMVDLEHGLEKLQIQNSGDILQSSDSGR 360
+GY+ KSK+L++VL + K EA+LIG+DE P V+ + D+ + S R
Sbjct: 1431 QGYRPKSKSLEQVLKTAIKMEAKLIGYDETPCVLTT-----------SCDDLDKHETSER 1479
Query: 361 GNDLLKCSVNSKSSRVDLAGARITESCN---------ISNDHQTQQSMRNNVQTSESSAN 513
DL VN K +R SCN +S + Q + + ++ S +
Sbjct: 1480 DCDLKVFPVNEKLAR----------SCNFKFKSMRKLLSPEASVQCNSDQTIMSNGSKED 1529
Query: 514 EKHTNTVFSVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEI-VGAEY 690
K T S + AKSRL EICAA+ W PPLFECCKE GPSHLK FT++V+VEI +
Sbjct: 1530 SKATGG--SKTESAKSRLHEICAANCWKPPLFECCKETGPSHLKEFTFRVVVEIEETSRV 1587
Query: 691 LECFGDPKPQKKAAQDHAAEGALWYLKHTGYI 786
+E +G+ + +KK A +HAAEGALW+LK GY+
Sbjct: 1588 IESYGEAQAKKKDAAEHAAEGALWFLKQEGYL 1619
>ref|NP_001266210.1| dicer-like protein 4 [Solanum lycopersicum]
gi|397529815|gb|AFO53518.1| dicer-like protein 4 [Solanum
lycopersicum]
Length = 1620
Score = 167 bits (423), Expect = 6e-39
Identities = 107/264 (40%), Positives = 154/264 (58%), Gaps = 2/264 (0%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ G+ L P K +LV+ ++ V + N N K+A+RMA+Q S LKA
Sbjct: 1370 LCQSFGWNLKFL-PSKKDGNFLVEARVNGENVSAAASALNINKKSAQRMAAQIVCSSLKA 1428
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPIVMVDLEHGLEKLQIQNSGDILQSSDSGR 360
+GY+ KSK+L++VL + K EA+LIG+DE P V+ + L+K + S L+
Sbjct: 1429 QGYRPKSKSLEQVLKAAIKMEAKLIGYDETPCVLTTICDDLDKHETSESDCHLKVFPVNE 1488
Query: 361 GNDLLK-CSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVF 537
+L + C+ SKS+R L + CN + Q++ +N ++ A T
Sbjct: 1489 --ELARSCNFKSKSTR-KLLSTEASVQCN------SDQTIMSNGSKEDAKA------TGG 1533
Query: 538 SVQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEI-VGAEYLECFGDPK 714
S + AKSRL EICAA+ W PPLFECCKE GPSHLK FT++V+VEI + +E +G+ +
Sbjct: 1534 SKTESAKSRLHEICAANCWKPPLFECCKETGPSHLKEFTFRVLVEIEETSRVIESYGEAQ 1593
Query: 715 PQKKAAQDHAAEGALWYLKHTGYI 786
+KK A +HAAEGALW+LK GY+
Sbjct: 1594 AKKKDAAEHAAEGALWFLKQEGYL 1617
>gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata]
Length = 1622
Score = 164 bits (415), Expect = 5e-38
Identities = 104/263 (39%), Positives = 151/263 (57%), Gaps = 1/263 (0%)
Frame = +1
Query: 1 LCQHLGFMLGLPEPIKIHEVYLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKA 180
LCQ G+ L K + YLV+ +++ V + N N KAA RMA+Q+ S LKA
Sbjct: 1373 LCQSYGWHLKFLASKKDSK-YLVEAKVNGENVSEAASALNINKKAAARMAAQQVHSSLKA 1431
Query: 181 RGYKLKSKTLKEVLLSTKKGEARLIGFDEEPIVMVDLEHGLEKLQIQNSGDILQSSDSGR 360
+GY+ KSK+L++V+ + KK EA+LIG+DE P V+ + +EK + S L+
Sbjct: 1432 QGYRRKSKSLEQVVKTAKKMEAKLIGYDEIPCVLTAKCNDVEKNEASESDRDLKVFPI-- 1489
Query: 361 GNDLLKCSVNSKSSRVDLAGARITESCNISNDHQTQQSMRNNVQTSESSANEKHTNTVFS 540
++ L + N K + G + CN ++Q++ N S+S A T +
Sbjct: 1490 -SEELARNCNFKLKACEKVGPKAAVQCN------SEQTIMPNGSNSDSKA------TGGA 1536
Query: 541 VQKPAKSRLMEICAASYWNPPLFECCKEDGPSHLKMFTYKVIVEI-VGAEYLECFGDPKP 717
+ AKS L E+CAA+ W PP FECCKE GPSHLK FT++V+VEI + +E G P+
Sbjct: 1537 INGSAKSILHEVCAANCWKPPRFECCKETGPSHLKEFTFRVVVEIEETSRVIESCGAPRA 1596
Query: 718 QKKAAQDHAAEGALWYLKHTGYI 786
+KK A + AAEGALW+LKH GY+
Sbjct: 1597 KKKDAAEDAAEGALWFLKHEGYM 1619
>ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
gi|223537239|gb|EEF38871.1| Ribonuclease III, putative
[Ricinus communis]
Length = 1633
Score = 162 bits (409), Expect = 3e-37
Identities = 100/246 (40%), Positives = 142/246 (57%), Gaps = 4/246 (1%)
Frame = +1
Query: 61 YLVKVEIDINGVRLTFKSSNKNSKAARRMASQEALSVLKARGYKLKSKTLKEVLLSTKKG 240
+LV+ ++ + L ++N N K A R+AS++ + LK +GY KS L+EVL S +K
Sbjct: 1404 FLVEAKVTGKDICLDASANNSNKKEAIRIASEQIIVKLKDQGYIRKSNYLEEVLRSGQKT 1463
Query: 241 EARLIGFDEEPIVMVDLEH-GLEKLQIQNSGDILQSSDSGRGNDLLKCSVNSKSSRVDLA 417
+A+LIG+DE PI + + GL+ L+IQ+ CS + R +
Sbjct: 1464 DAKLIGYDETPIDITAHDPIGLQNLKIQDPS----------------CSDFNPKIR---S 1504
Query: 418 GARITESCNISNDHQTQQSMRNNVQTS-ESSANEKHTNTVFSVQKPAKSRLMEICAASYW 594
+++T +C+ Q +V + SA + + AKSRL +ICAA+ W
Sbjct: 1505 MSKLTNTCSPCFIAANIQPPSPSVMVGGQPSATVAYPTSDMDKPTSAKSRLHDICAANCW 1564
Query: 595 NPPLFECCKEDGPSHLKMFTYKVIVEIVGAE--YLECFGDPKPQKKAAQDHAAEGALWYL 768
PPLFECC E+GPSHLK F+YKVIVEI A LECFG P+ +KKAA +HAAEGALWYL
Sbjct: 1565 KPPLFECCYEEGPSHLKSFSYKVIVEIEAAPDMILECFGAPREKKKAAAEHAAEGALWYL 1624
Query: 769 KHTGYI 786
+H GY+
Sbjct: 1625 QHVGYL 1630