BLASTX nr result

ID: Zingiber24_contig00023399 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00023399
         (240 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002297868.1| hypothetical protein POPTR_0001s13210g [Popu...    58   1e-06
gb|EOX99667.1| RING finger protein, putative [Theobroma cacao]         55   7e-06

>ref|XP_002297868.1| hypothetical protein POPTR_0001s13210g [Populus trichocarpa]
           gi|222845126|gb|EEE82673.1| hypothetical protein
           POPTR_0001s13210g [Populus trichocarpa]
          Length = 62

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 29/60 (48%), Positives = 38/60 (63%)
 Frame = +3

Query: 3   SLRYEQAI*LVEITCRDQQLHPLSTLQYVRNTIWCSGNSMIMTPNSPAIDHVMTLQYRRS 182
           S R++  I  +EITCR QQL P  TLQ+VR+ IW   +++ + P S   DHVM L Y RS
Sbjct: 3   SSRFDYLI-YIEITCRGQQLVPFLTLQHVRDNIWSPRDALTLLPESSTTDHVMVLHYGRS 61


>gb|EOX99667.1| RING finger protein, putative [Theobroma cacao]
          Length = 342

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 26/50 (52%), Positives = 33/50 (66%)
 Frame = +3

Query: 33  VEITCRDQQLHPLSTLQYVRNTIWCSGNSMIMTPNSPAIDHVMTLQYRRS 182
           +EITCR QQL P  TLQ VR+ IW S +++ + P +   DHVM L Y RS
Sbjct: 292 IEITCRGQQLVPYLTLQNVRDQIWSSRDAVTLLPETSTADHVMVLHYGRS 341


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