BLASTX nr result
ID: Zingiber24_contig00022978
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00022978
(1414 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004953401.1| PREDICTED: tRNA pseudouridine synthase A, mi... 476 e-132
gb|AFW72724.1| hypothetical protein ZEAMMB73_421497 [Zea mays] 475 e-131
gb|ACN28181.1| unknown [Zea mays] gi|413938174|gb|AFW72725.1| tR... 474 e-131
ref|NP_001150144.1| LOC100283773 [Zea mays] gi|195637102|gb|ACG3... 473 e-130
ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [S... 471 e-130
ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mi... 467 e-129
gb|EMT13214.1| tRNA pseudouridine synthase A [Aegilops tauschii] 466 e-128
ref|XP_003570061.1| PREDICTED: tRNA pseudouridine synthase A, mi... 464 e-128
dbj|BAK04467.1| predicted protein [Hordeum vulgare subsp. vulgare] 464 e-128
gb|EMS53855.1| tRNA pseudouridine synthase A, mitochondrial [Tri... 462 e-127
gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indi... 459 e-126
ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group] g... 457 e-126
gb|EAZ24127.1| hypothetical protein OsJ_07867 [Oryza sativa Japo... 457 e-126
emb|CBI18897.3| unnamed protein product [Vitis vinifera] 453 e-125
gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK... 450 e-124
ref|XP_004507720.1| PREDICTED: tRNA pseudouridine synthase A, mi... 449 e-123
ref|XP_004507719.1| PREDICTED: tRNA pseudouridine synthase A, mi... 449 e-123
ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudou... 448 e-123
ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi... 448 e-123
ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago trunca... 447 e-123
>ref|XP_004953401.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Setaria
italica]
Length = 538
Score = 476 bits (1226), Expect = e-132
Identities = 252/417 (60%), Positives = 305/417 (73%), Gaps = 13/417 (3%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGF+ RLNA L QI +G+ RVTNSFSAKKFCDRRRY+YLLPV
Sbjct: 109 VSAAAQVVSGRFYVDPPGFIDRLNAQLAPQIHAYGYVRVTNSFSAKKFCDRRRYLYLLPV 168
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPF----SQGSKQEERPDS 1067
F+LDPSAHPDRE+VMAS+GS +ELT+CLECSERGRK+P M S G + P
Sbjct: 169 FALDPSAHPDREAVMASMGSGSELTKCLECSERGRKVPGVMGREGKLPSPGVNGTDAPVE 228
Query: 1066 EQV----EDGKFESTKLEKPDIVARAGAGDDQLG---AQDIILTKNQPETADSISMEGEL 908
V E G + K + P + AG+ +LG A D++ + + A + E +L
Sbjct: 229 GTVNTHDESGSIGAAKGD-PTVSEETQAGNAELGSNGASDVVPSGSADADASIGNEENKL 287
Query: 907 RASNVDECGNPSNRDSFLEERSTMQTVVHDESN--EQLTAKTKFCYDDEQKARFNQILQH 734
A+ +E +Q + + SN E+ K+ F Y+DE K RFN+IL++
Sbjct: 288 EATATEE---------------KVQGMDFENSNGEEKPPTKSDFSYNDEMKERFNRILKY 332
Query: 733 YVGTHNFHNLTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMI 554
YVGTHNFHN TTR K EDP+A+R+IISF A+ VV +DGI+FV+CEVVGQSFMLHQIRKMI
Sbjct: 333 YVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMI 392
Query: 553 GLAVAVMRNCAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMD 374
GLAVAVMRNCAPES+ DVA RKDV++NVPTAPEVGL+LDEC FTSYN +WKDSHE ++M+
Sbjct: 393 GLAVAVMRNCAPESIYDVAFRKDVKLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSME 452
Query: 373 AYAEEAEDFKMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMETSVCAGAHEK 203
Y EEAE+FK+KYI+PHIA+MEHKEGAVALWLHSLNHRNYPD +MET AGA K
Sbjct: 453 PYCEEAEEFKVKYIFPHIAAMEHKEGAVALWLHSLNHRNYPDFRYMET---AGAEAK 506
>gb|AFW72724.1| hypothetical protein ZEAMMB73_421497 [Zea mays]
Length = 565
Score = 475 bits (1223), Expect = e-131
Identities = 256/445 (57%), Positives = 312/445 (70%), Gaps = 34/445 (7%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGF+ RLNA L QI +G+ RVTNSF+AKKFCDRRRY+YLLPV
Sbjct: 114 VSAAAQVVSGRFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLYLLPV 173
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSM--------------DPFSQ 1097
F+LDPSAHPDRE+VMAS+GS +ELT+CLECSERGRKIP M D +
Sbjct: 174 FALDPSAHPDREAVMASMGSGSELTKCLECSERGRKIPGVMGREGKLPSPGQNGVDAPVE 233
Query: 1096 GSKQEERPDSEQVEDGKFESTKLEKPDIVARAGAGDDQLGAQDIILTKNQPETADS-ISM 920
GS +E S + D K + T + + A G + D+ ++ ++ E A++ +
Sbjct: 234 GSSHDE---SGTLGDAKCDHTSSDGNNPFAHGEVGSNSKEKPDLPVSGDRTEVANAKMGS 290
Query: 919 EGE-LRASNVDECGNPSNRDSFLEERSTMQTVVHDESN-----EQLTAKTKFCYDDEQKA 758
G+ S+ D N + LE +T ES E+L K+ F Y DE K
Sbjct: 291 NGDGAVVSSADADIYIGNEEKKLEPAATENKAQGMESEKINGEEKLPTKSTFSYTDEVKE 350
Query: 757 RFNQILQHYVGTHNFHNLTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFM 578
RFN+IL++Y+GTHNFHN TTR K EDP+A+R+IISF A+ VV +DGI+FV+CEVVGQSFM
Sbjct: 351 RFNRILKYYIGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFM 410
Query: 577 LHQIRKMIGLAVAVMRNCAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKD 398
LHQIRKMIGLAVAVMRNCAPES+ DVA RKDV +NVPTAPEVGL+LDEC FTSYN +WKD
Sbjct: 411 LHQIRKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKD 470
Query: 397 SHEPLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMET---- 230
SHE ++M+ Y+EEAE+FK+KYI+ HIA+MEHKEGAVALWLHSLNHRNYPD +MET
Sbjct: 471 SHEAVSMEPYSEEAEEFKVKYIFTHIAAMEHKEGAVALWLHSLNHRNYPDFRYMETAEHN 530
Query: 229 ------SVCAGAHEK---HVENLAE 182
S+ AGA K VEN E
Sbjct: 531 PGAEVESIAAGAEPKVGAEVENTEE 555
>gb|ACN28181.1| unknown [Zea mays] gi|413938174|gb|AFW72725.1| tRNA pseudouridine
synthase family protein [Zea mays]
Length = 562
Score = 474 bits (1221), Expect = e-131
Identities = 255/446 (57%), Positives = 314/446 (70%), Gaps = 35/446 (7%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGF+ RLNA L QI +G+ RVTNSF+AKKFCDRRRY+YLLPV
Sbjct: 114 VSAAAQVVSGRFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLYLLPV 173
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSM--------------DPFSQ 1097
F+LDPSAHPDRE+VMAS+GS +ELT+CLECSERGRKIP M D +
Sbjct: 174 FALDPSAHPDREAVMASMGSGSELTKCLECSERGRKIPGVMGREGKLPSPGQNGVDAPVE 233
Query: 1096 GSKQEERPDSEQVEDGKFESTKLEKPDIVARAGAGDDQLGAQDIILTKNQPETADS---I 926
GS +E S + D K + T + + A G + D+ ++ ++ E A++
Sbjct: 234 GSSHDE---SGTLGDAKCDHTSSDGNNPFAHGEVGSNSKEKPDLPVSGDRTEVANAKMGS 290
Query: 925 SMEGELRASNVDECGNPSNRDSFLEERSTMQTVVHDESN-----EQLTAKTKFCYDDEQK 761
+ +G + +S++ N + LE +T ES E+L K+ F Y DE K
Sbjct: 291 NGDGAVVSSDI----YIGNEEKKLEPAATENKAQGMESEKINGEEKLPTKSTFSYTDEVK 346
Query: 760 ARFNQILQHYVGTHNFHNLTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSF 581
RFN+IL++Y+GTHNFHN TTR K EDP+A+R+IISF A+ VV +DGI+FV+CEVVGQSF
Sbjct: 347 ERFNRILKYYIGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSF 406
Query: 580 MLHQIRKMIGLAVAVMRNCAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWK 401
MLHQIRKMIGLAVAVMRNCAPES+ DVA RKDV +NVPTAPEVGL+LDEC FTSYN +WK
Sbjct: 407 MLHQIRKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWK 466
Query: 400 DSHEPLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMET--- 230
DSHE ++M+ Y+EEAE+FK+KYI+ HIA+MEHKEGAVALWLHSLNHRNYPD +MET
Sbjct: 467 DSHEAVSMEPYSEEAEEFKVKYIFTHIAAMEHKEGAVALWLHSLNHRNYPDFRYMETAEH 526
Query: 229 -------SVCAGAHEK---HVENLAE 182
S+ AGA K VEN E
Sbjct: 527 NPGAEVESIAAGAEPKVGAEVENTEE 552
>ref|NP_001150144.1| LOC100283773 [Zea mays] gi|195637102|gb|ACG38019.1| tRNA
pseudouridine synthase family protein [Zea mays]
Length = 561
Score = 473 bits (1216), Expect = e-130
Identities = 255/442 (57%), Positives = 311/442 (70%), Gaps = 31/442 (7%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGF+ RLNA L QI +G+ RVTNSF+AKKFCDRRRY+YLLPV
Sbjct: 114 VSAAAQVVSGRFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLYLLPV 173
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSM--------------DPFSQ 1097
F+LDPSAHPDRE+VMAS+GS +ELT+CLECSERGRKIP M D +
Sbjct: 174 FALDPSAHPDREAVMASMGSGSELTKCLECSERGRKIPGVMGREGKLPSPGQNGVDAPVE 233
Query: 1096 GSKQEERPDSEQVEDGKFESTKLEKPDIVARAGAGDDQLGAQDIILTKNQPETADS-ISM 920
GS +E S + D K + T + + A G + D+ ++ + E A++ +
Sbjct: 234 GSSHDE---SGTLGDAKCDHTSSDGGNPFAHGEVGSNSKEKPDLPVSGDGTEVANAEMGS 290
Query: 919 EGELRASNVD-ECGNPSNRDSFLEERSTMQTVVHDESN--EQLTAKTKFCYDDEQKARFN 749
G+ + D GN + E Q + ++SN E+L KT F Y DE K RFN
Sbjct: 291 NGDSDVVSSDIYMGNEEKKLPAATENKA-QGMESEKSNGEEKLPTKTTFSYTDEVKERFN 349
Query: 748 QILQHYVGTHNFHNLTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQ 569
+IL++Y+GTHNFHN TTR K EDP+A+R+IISF A+ VV +DGI+FV+CEVVGQSFMLHQ
Sbjct: 350 RILKYYIGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQ 409
Query: 568 IRKMIGLAVAVMRNCAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHE 389
IRKMIGLAVAV+RNCAPES+ DVA RKDV +NVPTAPEVGL+LDEC FTSYN +WKDSHE
Sbjct: 410 IRKMIGLAVAVIRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHE 469
Query: 388 PLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMET------- 230
+ M+ Y+EEAE+FK+KYI+ HIA+MEHKEGAVALWLHSLNHRNYPD +MET
Sbjct: 470 AVFMEPYSEEAEEFKVKYIFTHIAAMEHKEGAVALWLHSLNHRNYPDFRYMETAEHNAGA 529
Query: 229 ---SVCAGAHEK---HVENLAE 182
S+ AGA K VEN E
Sbjct: 530 EVESIAAGAEPKVGAEVENTEE 551
>ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor]
gi|241934333|gb|EES07478.1| hypothetical protein
SORBIDRAFT_04g032290 [Sorghum bicolor]
Length = 567
Score = 471 bits (1213), Expect = e-130
Identities = 248/417 (59%), Positives = 304/417 (72%), Gaps = 21/417 (5%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGF+ RLNA L QI +G+ RVTNSFSAKKFCDRRRY+YLLPV
Sbjct: 114 VSAAAQVVSGRFYVDPPGFIDRLNAQLASQIRAYGYVRVTNSFSAKKFCDRRRYLYLLPV 173
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSM--------------DPFSQ 1097
F+LDPSAHPDRE+VMAS+GS +ELT+CLECSERGRK+P M D ++
Sbjct: 174 FALDPSAHPDREAVMASMGSGSELTKCLECSERGRKVPGVMGREGKLPSPGQNGVDASAE 233
Query: 1096 GSKQEERPDSEQVEDGKFESTKLEKPDIVARAGAGDDQLGAQDIILTKNQPETADSI--S 923
GS +S + D K + T + + A G + D+ ++ + E A++ S
Sbjct: 234 GSVASH-DESGTLGDAKCDHTSPDGGNPCAHGEVGSNSKEKLDLPVSGDGTEVANAETGS 292
Query: 922 MEGELRASNVDECGNPSNRDSFLEERST---MQTVVHDESN--EQLTAKTKFCYDDEQKA 758
G + D N + LE +T Q + ++SN E+L K+ F Y DE K
Sbjct: 293 NGGGDVVPSADADIYIGNEEKKLEPVATEEKAQGMDSEKSNGEEKLPTKSAFSYTDEVKE 352
Query: 757 RFNQILQHYVGTHNFHNLTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFM 578
RFN+IL++YVGTHNFHN TTR K EDP+A+R+IISF A+ VV +DGI+FV+CEVVGQSFM
Sbjct: 353 RFNRILKYYVGTHNFHNFTTRTKAEDPAAKRFIISFGADRVVSLDGIDFVRCEVVGQSFM 412
Query: 577 LHQIRKMIGLAVAVMRNCAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKD 398
LHQIRKMIGLAVAVMRNCAPE++ DVA RKDV +NVPTAPEVGL+LDEC FTSYN +WKD
Sbjct: 413 LHQIRKMIGLAVAVMRNCAPETIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKD 472
Query: 397 SHEPLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMETS 227
SHE ++M+ Y EEAE+FK+KYI+PHIA+MEHKEGAVALWLHSLNHRNYPD +MET+
Sbjct: 473 SHEAVSMEPYYEEAEEFKVKYIFPHIAAMEHKEGAVALWLHSLNHRNYPDFRYMETA 529
>ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
vinifera]
Length = 503
Score = 467 bits (1202), Expect = e-129
Identities = 237/411 (57%), Positives = 295/411 (71%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSA QVVSGRFY+DPPG V RLN++LP QI +FGFKRVT SF+AKKFCDRRRYVYL+PV
Sbjct: 101 VSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPV 160
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVE 1055
F+LDPS+HPDRESV+AS+GS+NEL +CLECSERGRK+ M S SK D E VE
Sbjct: 161 FALDPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIMGKRSFESKVSV-DDREDVE 219
Query: 1054 DGKFESTKLEKPDIVARAGAGDDQLGAQDIILTKNQPETADSISMEGELRASNVDECGNP 875
ES + I+ ++ A ++ + + D ++ + EG N P
Sbjct: 220 G---ESKNIVGAAIL-KSEAKEESMASSD---NRHDGNSISQPIKEGRCFQDNETSESTP 272
Query: 874 SNRDSFLEERSTMQTVVHDESNEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNLTTR 695
+R S E + D+ +L + FCY D+++ RFN+IL HYVGTHNFHN TTR
Sbjct: 273 DSRASAQNEPGVSHSEQSDKGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTR 332
Query: 694 IKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAPE 515
IK EDPSA+R+I+SF+ N++V ++GIEFVKCEVVGQSFMLHQIRKMIGLAVA+MRN APE
Sbjct: 333 IKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPE 392
Query: 514 SLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMKY 335
SL++ AL KDV INVPTAPEVGL+LDEC F+SYN +W+DSHE ++M AYAEEAE+FKMK+
Sbjct: 393 SLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKMKH 452
Query: 334 IYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
+Y HIA+ EHKEG VALWLHSLNHRNYPDL + + E +A+
Sbjct: 453 VYSHIAATEHKEGVVALWLHSLNHRNYPDLCIGDNGAASDGKNGEEETMAD 503
>gb|EMT13214.1| tRNA pseudouridine synthase A [Aegilops tauschii]
Length = 585
Score = 466 bits (1198), Expect = e-128
Identities = 250/449 (55%), Positives = 297/449 (66%), Gaps = 38/449 (8%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGF+ RLNA L QI FG+ RVTNSFSAKKFCDRRRYVYLLPV
Sbjct: 110 VSAAAQVVSGRFYVDPPGFIDRLNAKLAPQIRAFGYVRVTNSFSAKKFCDRRRYVYLLPV 169
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMD-----PFSQGSKQEERPD 1070
+LDPSAHPDRE+V AS GS+N+L +C+ECSERGRK+P M P S+ K + P
Sbjct: 170 LALDPSAHPDREAVKASAGSENQLAKCVECSERGRKVPDIMGREGKLPDSEEEKVLDTPG 229
Query: 1069 SEQVE-DGKFESTKLEKPDIVARAGAGDDQL----------GAQDIILTKNQPETADSIS 923
E V G+ K V G GD + AQ+ L N D +
Sbjct: 230 EETVAAHGELGDAKSVPASSVTETGLGDGVMIDLPSSGNGTEAQNAELGSNGAGKCDIET 289
Query: 922 MEG----------------------ELRASNVDECGNPSNRDSFLEERSTMQTVVHDESN 809
G ++ AS V E N +ER + +
Sbjct: 290 AVGNCHSEAVPTSASETICSTVGSVDVIASVVAEKENNFEPADIEKERMQATNIQKENGE 349
Query: 808 EQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNLTTRIKPEDPSARRYIISFNANSVVC 629
E K F Y DE K +FN+IL+HYVGT NFHN TTR K EDP+A+RYIISF AN+VV
Sbjct: 350 ESPLLKNTFAYTDEVKEKFNRILKHYVGTRNFHNFTTRTKAEDPAAKRYIISFTANTVVS 409
Query: 628 IDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESLMDVALRKDVRINVPTAPEVG 449
+DGI+FV+CEVVGQSFMLHQIRKM+GLAVAVMRNCAPES+ DVA RKD+R+NVPTAPEVG
Sbjct: 410 LDGIDFVRCEVVGQSFMLHQIRKMVGLAVAVMRNCAPESIYDVAFRKDIRLNVPTAPEVG 469
Query: 448 LFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAVALWLHSL 269
L LDEC FTSYN++W D+HE ++++ YAEEAE+FK+KYI+PHIA+MEHKEGAVALWLHSL
Sbjct: 470 LHLDECMFTSYNSKWMDTHEAVSIEPYAEEAEEFKIKYIFPHIAAMEHKEGAVALWLHSL 529
Query: 268 NHRNYPDLGFMETSVCAGAHEKHVENLAE 182
N RNYPD +MET+ VEN+ E
Sbjct: 530 NSRNYPDFRYMETTGSEAKVGAVVENMEE 558
>ref|XP_003570061.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Brachypodium distachyon]
Length = 553
Score = 464 bits (1194), Expect = e-128
Identities = 247/438 (56%), Positives = 299/438 (68%), Gaps = 27/438 (6%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGFV RLNA L QI FG+ RVTNSFSAKKFCDRRRYVYLLPV
Sbjct: 110 VSAAAQVVSGRFYVDPPGFVDRLNAQLAPQIRAFGYVRVTNSFSAKKFCDRRRYVYLLPV 169
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEER--PDSEQ 1061
+LDPSAHPDRE+VMAS+GS N+L +C+ECSERGRK+P M + EE D+ +
Sbjct: 170 LALDPSAHPDREAVMASVGSGNQLAKCVECSERGRKVPDIMGREGKVPNPEEEILLDASR 229
Query: 1060 VE----------DGKFESTKLEKPDIV----ARAGAGDDQL----------GAQDIILTK 953
VE +G + D AG G D + AQ+ L
Sbjct: 230 VETVSTHGEIGSNGNAKFVPASSCDATVTCHGEAGLGGDIMFDIPNSGNGAEAQNAELGS 289
Query: 952 N-QPETADSISMEGELRASNVDECGNPSNRDSFLEERSTMQTVVHDESNEQLTAKTKFCY 776
N + A S+ + G + +C EE+ + + + E K F Y
Sbjct: 290 NGSVDVAASVDVAGSVVTEKEHKCVPVVGG----EEKMEVMDIQKNNGEESPLTKNTFAY 345
Query: 775 DDEQKARFNQILQHYVGTHNFHNLTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEV 596
DE K +FN+IL++YVGTHNFHN TTR K EDP+A+R+IISF AN VV +DGI+FV+CEV
Sbjct: 346 TDEVKEKFNRILKYYVGTHNFHNFTTRTKAEDPAAKRFIISFTANRVVRLDGIDFVRCEV 405
Query: 595 VGQSFMLHQIRKMIGLAVAVMRNCAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSY 416
VGQSFMLHQIRKM+GLAVAVMRNCAPES+ DVA RKD+R+NVPTAPEVGL LDEC FTSY
Sbjct: 406 VGQSFMLHQIRKMVGLAVAVMRNCAPESIYDVAFRKDIRLNVPTAPEVGLHLDECMFTSY 465
Query: 415 NNQWKDSHEPLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFM 236
N +WKD+HE ++++ YAEEAE+FK+KYI+PHIA+MEHKEGAVALWLHSLN RNYPD +M
Sbjct: 466 NAKWKDTHEAVSIEPYAEEAEEFKVKYIFPHIAAMEHKEGAVALWLHSLNSRNYPDFRYM 525
Query: 235 ETSVCAGAHEKHVENLAE 182
E + + VEN+ E
Sbjct: 526 ENAGSEAKVDAIVENMEE 543
>dbj|BAK04467.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 572
Score = 464 bits (1193), Expect = e-128
Identities = 251/453 (55%), Positives = 301/453 (66%), Gaps = 42/453 (9%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGF+ RLNA L QI FG+ RVTNSFSAKKFCDRRRYVYLLPV
Sbjct: 110 VSAAAQVVSGRFYVDPPGFIDRLNAKLAPQIRAFGYVRVTNSFSAKKFCDRRRYVYLLPV 169
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMD-----PFSQGSKQEERPD 1070
+LDPSAHPDRE+V AS GS+N+L +C+ECSERGRK+P M P S+ +K +
Sbjct: 170 LALDPSAHPDREAVKASAGSENQLAKCVECSERGRKVPDIMGREGKLPDSEENKVLDTSG 229
Query: 1069 SEQVE-DGKFESTKLEKP------------------DIVARAGAGDDQLGAQ-------- 971
E V G+ S KP D++ + D+ AQ
Sbjct: 230 EETVAAHGELRSNGEAKPFPTSSVTGTCDGETRLGCDVMIDIASSDNGTEAQNSELESIG 289
Query: 970 ----DIILTKNQPETA------DSISMEGELRASNVDECGNPSNRDSFLEERSTMQTVVH 821
DI + P +A DS ++ AS V E GN +ER +
Sbjct: 290 SGKCDIEPAEAVPTSASETIFSDSTVGSVDVVASVVAEKGNNFEPADSEKERMQATNIQK 349
Query: 820 DESNEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNLTTRIKPEDPSARRYIISFNAN 641
+ K F Y DE K +FN+IL+HYVGT NFHN TTR K EDP+A+RYIISF AN
Sbjct: 350 ENGEGSPLLKNTFAYTDEVKEKFNRILKHYVGTRNFHNFTTRTKAEDPAAKRYIISFTAN 409
Query: 640 SVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESLMDVALRKDVRINVPTA 461
SVV +DGI+FV+CEVVGQSFMLHQIRKM+GLAVAVMRNCAPES+ DVA RKD+R+NVPTA
Sbjct: 410 SVVSLDGIDFVRCEVVGQSFMLHQIRKMVGLAVAVMRNCAPESIYDVAFRKDIRLNVPTA 469
Query: 460 PEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAVALW 281
PEVGL LDEC F SYN++W D+HE ++++ YAEEAE+FK+KYI+PHIA+MEHKEGAVALW
Sbjct: 470 PEVGLHLDECMFASYNSKWMDTHEAVSIEPYAEEAEEFKIKYIFPHIAAMEHKEGAVALW 529
Query: 280 LHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
LHSLN RNYPD +MET+ VEN+ E
Sbjct: 530 LHSLNSRNYPDFRYMETAGSEAKVRAEVENMEE 562
>gb|EMS53855.1| tRNA pseudouridine synthase A, mitochondrial [Triticum urartu]
Length = 575
Score = 462 bits (1190), Expect = e-127
Identities = 250/456 (54%), Positives = 298/456 (65%), Gaps = 45/456 (9%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPPGF+ RLNA L QI FG+ RVTNSF+AKKFCDRRRYVYLLPV
Sbjct: 110 VSAAAQVVSGRFYVDPPGFIDRLNAKLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPV 169
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMD-----PFSQGSKQEERPD 1070
+LDPSAHPDRE+V AS GS+N+L +C+ECSERGRK+P M P S+ K + P
Sbjct: 170 LALDPSAHPDREAVKASAGSENQLAKCVECSERGRKVPDIMGREGKLPDSEEEKVLDTPG 229
Query: 1069 SEQVED-GKFESTKLEKPDIVARAGAGDDQLGAQ---DIILTKNQPET------------ 938
E V G+ K V G+ +LG DI + N E
Sbjct: 230 EETVASHGELGDAKSVPASPVTETCDGETRLGGDVMIDIPSSGNGTEAQNAELGSNGAGK 289
Query: 937 ------------------------ADSISMEGELRASNVDECGNPSNRDSFLEERSTMQT 830
+DS ++ AS V E N +ER
Sbjct: 290 FDIEPALGTCDSEAVPTSASETICSDSTLGSVDVVASVVAEKENNFEPADSEKERMQAIN 349
Query: 829 VVHDESNEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNLTTRIKPEDPSARRYIISF 650
+ + E K F Y DE K +FN+IL+HYVGT NFHN TTR K EDP+A+RYIISF
Sbjct: 350 IQKENGEESPLLKNTFAYTDEVKEKFNRILKHYVGTRNFHNFTTRTKAEDPAAKRYIISF 409
Query: 649 NANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESLMDVALRKDVRINV 470
ANSVV +DGI+FV+CEVVGQSFMLHQIRKM+GLAVAVMRNCAPES+ DVA RKD+R+NV
Sbjct: 410 TANSVVSLDGIDFVRCEVVGQSFMLHQIRKMVGLAVAVMRNCAPESIYDVAFRKDIRLNV 469
Query: 469 PTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAV 290
PTAPEVGL LDEC FTSYN++W D+HE ++++ YAEEAE+FK+KYI+PHIA+MEHKEGAV
Sbjct: 470 PTAPEVGLHLDECMFTSYNSKWMDTHEAVSIEPYAEEAEEFKIKYIFPHIAAMEHKEGAV 529
Query: 289 ALWLHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
ALWLHSLN RNYPD +MET+ VEN+ E
Sbjct: 530 ALWLHSLNSRNYPDFRYMETAGSEAKVGAEVENMEE 565
>gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indica Group]
Length = 581
Score = 459 bits (1180), Expect = e-126
Identities = 247/461 (53%), Positives = 300/461 (65%), Gaps = 50/461 (10%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPP F RLNA L QI FG+ RVTNSF+AKKFCDRRRYVYLLPV
Sbjct: 111 VSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPV 170
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSM------------------- 1112
F+LDPSAHPDRE+VMAS+GS +ELT+CLECSERGRK+P M
Sbjct: 171 FALDPSAHPDREAVMASVGSGSELTKCLECSERGRKVPGVMGREGKVPDPALQEEKSVEA 230
Query: 1111 ---------------DPFSQGSKQEERP--DSE-QVEDGKFESTKLEKPDIVARAGAGDD 986
DP S G + + P D+E + + S EK D+ G
Sbjct: 231 SREEAAVGSNEDANCDPASTGDRSVDLPIPDNETNTQITEMRSNGAEKCDVQLSGGTLCS 290
Query: 985 QLGAQDI------ILTKNQPETADSISMEGELRASN-------VDECGNPSNRDSFLEER 845
+ I IL + +DS+ ++ A V E G D E+
Sbjct: 291 EAVPASISETVCPILNSDSNTNSDSVDVDPSFVAEKKGSIETVVTEDGKKQAMDVVTEDE 350
Query: 844 STMQTVVHDESNEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNLTTRIKPEDPSARR 665
S E++ ++ F Y E K RFN+IL+ YVGTHNFHN TTR K EDP+A+R
Sbjct: 351 KKQDVDYEGSSLEEMPLRSAFSYTHEVKERFNRILKKYVGTHNFHNFTTRTKAEDPAAKR 410
Query: 664 YIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESLMDVALRKD 485
+IISF A+ VV +DGI+F++CEVVGQSFMLHQIRKMIGLAVAVMRNCAPES+ DVA RKD
Sbjct: 411 FIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRKD 470
Query: 484 VRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMKYIYPHIASMEH 305
V +NVPTAPEVGL+LDEC FTSYN +WKDSHE ++M+ Y+EEAE+FK+KYI+PHIA+MEH
Sbjct: 471 VNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPYSEEAEEFKLKYIFPHIAAMEH 530
Query: 304 KEGAVALWLHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
KEGAVALWLHSLN RNYPD +M+ + + VE++ E
Sbjct: 531 KEGAVALWLHSLNSRNYPDFRYMDNAGTEASIAAAVESVDE 571
>ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group]
gi|50251324|dbj|BAD28300.1| putative pseudouridine
synthase 1 [Oryza sativa Japonica Group]
gi|50252138|dbj|BAD28134.1| putative pseudouridine
synthase 1 [Oryza sativa Japonica Group]
gi|113537217|dbj|BAF09600.1| Os02g0668400 [Oryza sativa
Japonica Group]
Length = 581
Score = 457 bits (1176), Expect = e-126
Identities = 247/461 (53%), Positives = 302/461 (65%), Gaps = 50/461 (10%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPP F RLNA L QI FG+ RVTNSF+AKKFCDRRRYVYLLPV
Sbjct: 111 VSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPV 170
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSM------------------- 1112
F+LDPSAHPDRE+VMAS+GS +ELT+CLECSERGRK+P M
Sbjct: 171 FALDPSAHPDREAVMASVGSGSELTKCLECSERGRKVPGVMGREGKVPDPALQEEKSVEA 230
Query: 1111 ---------------DPFSQGSKQEERP--DSE-QVEDGKFESTKLEKPDIVARAGA-GD 989
DP S G + + P D+E + + S EK D+ G
Sbjct: 231 SREEAAVGSNEDANCDPASTGDRSVDLPIPDNETNTQITEMRSNGAEKCDVQLSGGTLCS 290
Query: 988 DQLGAQDI-----ILTKNQPETADSISMEGELRASN-------VDECGNPSNRDSFLEER 845
+ + A + IL + +DS+ ++ A V E G D E+
Sbjct: 291 EAVPASNSETVCPILNSDSNTNSDSVDVDPSFVAEKKGSIETVVTEDGKKQAMDVVTEDE 350
Query: 844 STMQTVVHDESNEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNLTTRIKPEDPSARR 665
S E++ ++ F Y E K RFN+IL+ YVGTHNFHN TTR K EDP+A+R
Sbjct: 351 KKQDVDYEGSSLEEMPLRSAFSYTHEVKERFNRILKKYVGTHNFHNFTTRTKAEDPAAKR 410
Query: 664 YIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESLMDVALRKD 485
+IISF A+ VV +DGI+F++CEVVGQSFMLHQIRKMIGLAVAVMRNCAPES+ DVA RKD
Sbjct: 411 FIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRKD 470
Query: 484 VRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMKYIYPHIASMEH 305
V +NVPTAPEVGL+LDEC FTSYN +WKDSHE ++M+ Y+EEAE+FK+KYI+PHIA+MEH
Sbjct: 471 VNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPYSEEAEEFKLKYIFPHIAAMEH 530
Query: 304 KEGAVALWLHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
KEGAVALWLHSLN RNYPD +M+ + + VE++ E
Sbjct: 531 KEGAVALWLHSLNSRNYPDFRYMDNAGTEASIAAAVESVDE 571
>gb|EAZ24127.1| hypothetical protein OsJ_07867 [Oryza sativa Japonica Group]
Length = 518
Score = 457 bits (1176), Expect = e-126
Identities = 247/461 (53%), Positives = 302/461 (65%), Gaps = 50/461 (10%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSAAAQVVSGRFYVDPP F RLNA L QI FG+ RVTNSF+AKKFCDRRRYVYLLPV
Sbjct: 48 VSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPV 107
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSM------------------- 1112
F+LDPSAHPDRE+VMAS+GS +ELT+CLECSERGRK+P M
Sbjct: 108 FALDPSAHPDREAVMASVGSGSELTKCLECSERGRKVPGVMGREGKVPDPALQEEKSVEA 167
Query: 1111 ---------------DPFSQGSKQEERP--DSE-QVEDGKFESTKLEKPDIVARAGA-GD 989
DP S G + + P D+E + + S EK D+ G
Sbjct: 168 SREEAAVGSNEDANCDPASTGDRSVDLPIPDNETNTQITEMRSNGAEKCDVQLSGGTLCS 227
Query: 988 DQLGAQDI-----ILTKNQPETADSISMEGELRASN-------VDECGNPSNRDSFLEER 845
+ + A + IL + +DS+ ++ A V E G D E+
Sbjct: 228 EAVPASNSETVCPILNSDSNTNSDSVDVDPSFVAEKKGSIETVVTEDGKKQAMDVVTEDE 287
Query: 844 STMQTVVHDESNEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNLTTRIKPEDPSARR 665
S E++ ++ F Y E K RFN+IL+ YVGTHNFHN TTR K EDP+A+R
Sbjct: 288 KKQDVDYEGSSLEEMPLRSAFSYTHEVKERFNRILKKYVGTHNFHNFTTRTKAEDPAAKR 347
Query: 664 YIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESLMDVALRKD 485
+IISF A+ VV +DGI+F++CEVVGQSFMLHQIRKMIGLAVAVMRNCAPES+ DVA RKD
Sbjct: 348 FIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRKD 407
Query: 484 VRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMKYIYPHIASMEH 305
V +NVPTAPEVGL+LDEC FTSYN +WKDSHE ++M+ Y+EEAE+FK+KYI+PHIA+MEH
Sbjct: 408 VNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSMEPYSEEAEEFKLKYIFPHIAAMEH 467
Query: 304 KEGAVALWLHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
KEGAVALWLHSLN RNYPD +M+ + + VE++ E
Sbjct: 468 KEGAVALWLHSLNSRNYPDFRYMDNAGTEASIAAAVESVDE 508
>emb|CBI18897.3| unnamed protein product [Vitis vinifera]
Length = 419
Score = 453 bits (1166), Expect = e-125
Identities = 236/415 (56%), Positives = 294/415 (70%), Gaps = 4/415 (0%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSA QVVSGRFY+DPPG V RLN++LP QI +FGFKRVT SF+AKKFCDRRRYVYL+PV
Sbjct: 47 VSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPV 106
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVE 1055
F+LDPS+HPDRESV+AS+GS+NEL +CLECSERGRK+ M
Sbjct: 107 FALDPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIM------------------- 147
Query: 1054 DGKFESTKLEKPDIVARAGAGDDQLGAQDIILTKNQPETADSISMEGELRAS----NVDE 887
GK K E +IV QLG + N + ++ E++A+ N+D
Sbjct: 148 -GK---RKGESKNIV--------QLG-----IPSNDEAAIVNSEVQEEIKATSNNNNID- 189
Query: 886 CGNPSNRDSFLEERSTMQTVVHDESNEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHN 707
N S ++ EE + + + E +L + FCY D+++ RFN+IL HYVGTHNFHN
Sbjct: 190 -ANNSISETIKEEAAKLSS----EGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHN 244
Query: 706 LTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRN 527
TTRIK EDPSA+R+I+SF+ N++V ++GIEFVKCEVVGQSFMLHQIRKMIGLAVA+MRN
Sbjct: 245 FTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRN 304
Query: 526 CAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDF 347
APESL++ AL KDV INVPTAPEVGL+LDEC F+SYN +W+DSHE ++M AYAEEAE+F
Sbjct: 305 VAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEF 364
Query: 346 KMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
KMK++Y HIA+ EHKEG VALWLHSLNHRNYPDL + + E +A+
Sbjct: 365 KMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCIGDNGAASDGKNGEEETMAD 419
>gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK33588.1| unknown
[Medicago truncatula]
Length = 530
Score = 450 bits (1158), Expect = e-124
Identities = 231/404 (57%), Positives = 292/404 (72%), Gaps = 10/404 (2%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSA QVVSGRFY+DPPGFV RLN++LP QI +FGFKRVT SFSAKKFCDRRRYVYL+PV
Sbjct: 116 VSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIPV 175
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVE 1055
F+LDP H DRE+V+AS+GS+NEL +CL CSERGRK+ + SK+ ++ VE
Sbjct: 176 FALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVG----NSKRNLELEAVDVE 231
Query: 1054 DGKFESTKLEKP----DIVARAGAGDDQLGAQDIILTKNQPETADSISMEGELRASNVDE 887
+G + D+ GDD ++ I + + ++ + + S+ DE
Sbjct: 232 NGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKTVV--SDQDE 289
Query: 886 C----GNPSNRDSFLEERSTMQTVVHDESNEQLTAK--TKFCYDDEQKARFNQILQHYVG 725
G N LEE ++ N + TA + FCY ++++ RFN IL+ YVG
Sbjct: 290 VAPINGGSENNLGILEE---------EKVNREDTAANGSGFCYGEKERERFNNILKCYVG 340
Query: 724 THNFHNLTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLA 545
THNFHN TTRIKPEDPSA+R+IISF+A++ V ++G+EFVKCE+VGQSFMLHQIRKM+GLA
Sbjct: 341 THNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLA 400
Query: 544 VAVMRNCAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYA 365
VA+MRNCAPESL++ AL+KDV I VPTAPEVGL+LDEC FTSYN +WKD+HE ++M AY
Sbjct: 401 VAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYE 460
Query: 364 EEAEDFKMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFME 233
+EAEDFKM+YIYPHIAS E+KEG V LWLHSLNHRNYPDLG ++
Sbjct: 461 KEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLGILD 504
>ref|XP_004507720.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
X2 [Cicer arietinum]
Length = 475
Score = 449 bits (1154), Expect = e-123
Identities = 235/412 (57%), Positives = 297/412 (72%), Gaps = 1/412 (0%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSA QVVSGRFY+DPPGFV RLN++LP QI +FG+KRVT SFSAKKFCDRRRYVYL+PV
Sbjct: 86 VSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGYKRVTASFSAKKFCDRRRYVYLIPV 145
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVE 1055
F+LDP H DRE+V+AS+GS+NEL +CLECSERGRK+ + S+ + + E D E +
Sbjct: 146 FALDPCCHRDRETVLASLGSENELVKCLECSERGRKVEGLVGN-SKRNLELEAMDVETTD 204
Query: 1054 DGKFESTKLEKPDIVARAGAGDDQLGAQDIILTKNQPETADSISMEGELRASNVDECGNP 875
G + + K I G ++ +D+ +K ET +S + E+ N G
Sbjct: 205 KG--DDNRSNKESINDNEG----KVSVEDVN-SKTSFETV--VSGQDEVSPLN----GGS 251
Query: 874 SNRDSFLEERSTMQTVVHDESNEQLTAK-TKFCYDDEQKARFNQILQHYVGTHNFHNLTT 698
N + LEE + E AK ++FCY ++++ RFN+IL+ YVGTHNFHN TT
Sbjct: 252 ENNSAVLEEEKV--------NGEDTPAKRSEFCYGEKERERFNKILKSYVGTHNFHNFTT 303
Query: 697 RIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAP 518
RIKPEDPSA+R+IISF+A++ V I+G+EFVKCE+VGQSFMLHQIRKM+GLAVA+MRNCAP
Sbjct: 304 RIKPEDPSAKRFIISFDASNTVVIEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAP 363
Query: 517 ESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMK 338
ESL++ AL+ DV I VPTAPEVGL+LDEC FTSYN +WKD+HE ++M AY +EAEDFKMK
Sbjct: 364 ESLIEKALQTDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMK 423
Query: 337 YIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
+IY HIAS E KEG V LWLHSLNHRNY DL +E A + +E +AE
Sbjct: 424 FIYSHIASTEQKEGTVGLWLHSLNHRNYSDLRVVEEEGVANEKKSEIEVVAE 475
>ref|XP_004507719.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
X1 [Cicer arietinum]
Length = 505
Score = 449 bits (1154), Expect = e-123
Identities = 235/412 (57%), Positives = 297/412 (72%), Gaps = 1/412 (0%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSA QVVSGRFY+DPPGFV RLN++LP QI +FG+KRVT SFSAKKFCDRRRYVYL+PV
Sbjct: 116 VSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGYKRVTASFSAKKFCDRRRYVYLIPV 175
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVE 1055
F+LDP H DRE+V+AS+GS+NEL +CLECSERGRK+ + S+ + + E D E +
Sbjct: 176 FALDPCCHRDRETVLASLGSENELVKCLECSERGRKVEGLVGN-SKRNLELEAMDVETTD 234
Query: 1054 DGKFESTKLEKPDIVARAGAGDDQLGAQDIILTKNQPETADSISMEGELRASNVDECGNP 875
G + + K I G ++ +D+ +K ET +S + E+ N G
Sbjct: 235 KG--DDNRSNKESINDNEG----KVSVEDVN-SKTSFETV--VSGQDEVSPLN----GGS 281
Query: 874 SNRDSFLEERSTMQTVVHDESNEQLTAK-TKFCYDDEQKARFNQILQHYVGTHNFHNLTT 698
N + LEE + E AK ++FCY ++++ RFN+IL+ YVGTHNFHN TT
Sbjct: 282 ENNSAVLEEEKV--------NGEDTPAKRSEFCYGEKERERFNKILKSYVGTHNFHNFTT 333
Query: 697 RIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAP 518
RIKPEDPSA+R+IISF+A++ V I+G+EFVKCE+VGQSFMLHQIRKM+GLAVA+MRNCAP
Sbjct: 334 RIKPEDPSAKRFIISFDASNTVVIEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAP 393
Query: 517 ESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMK 338
ESL++ AL+ DV I VPTAPEVGL+LDEC FTSYN +WKD+HE ++M AY +EAEDFKMK
Sbjct: 394 ESLIEKALQTDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMK 453
Query: 337 YIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE 182
+IY HIAS E KEG V LWLHSLNHRNY DL +E A + +E +AE
Sbjct: 454 FIYSHIASTEQKEGTVGLWLHSLNHRNYSDLRVVEEEGVANEKKSEIEVVAE 505
>ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 448 bits (1152), Expect = e-123
Identities = 233/393 (59%), Positives = 284/393 (72%), Gaps = 3/393 (0%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSA QVVSGRFY+DPPGFV RLN++L QI +FG+KRVT SF+AKKFCDRRRYVYL+PV
Sbjct: 117 VSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPV 176
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVE 1055
F+LDP+ H DRESV AS+GSDNEL +CLECSERGRK+ + G + E +
Sbjct: 177 FALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLI-----GKRNFEVKTAITES 231
Query: 1054 DGKFESTK-LEKPDIVARAGAGDDQLGAQDIILTKNQPETADSISMEGELRASNVDECGN 878
D + +E D+ A G + T + S+ +E NV G
Sbjct: 232 DISSNTVNAIEVSDVQAN--------GVLEDSATTSDSNKQTSVLVENTATELNVGSEGT 283
Query: 877 PSNRDSFLEER-STMQTVVHDES-NEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNL 704
+ S + S + VV ES N + + F Y +E+KARFN+IL+HYVGTHNFHN
Sbjct: 284 AKSESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNFHNF 343
Query: 703 TTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNC 524
TTR K EDP+ARR+I+SF+A+++V ++GIEFVKCEVVGQSFMLHQIRKM+GLAVA+MRNC
Sbjct: 344 TTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNC 403
Query: 523 APESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFK 344
APESL++ AL+KDV INVPTAPEVGL+LDEC FTSYN +WKD+HE ++M AY E AEDFK
Sbjct: 404 APESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDFK 463
Query: 343 MKYIYPHIASMEHKEGAVALWLHSLNHRNYPDL 245
MK IY HIAS EHK+GAVALWLHSLNHRNYPDL
Sbjct: 464 MKQIYSHIASTEHKDGAVALWLHSLNHRNYPDL 496
>ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis
sativus]
Length = 519
Score = 448 bits (1152), Expect = e-123
Identities = 233/393 (59%), Positives = 284/393 (72%), Gaps = 3/393 (0%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSA QVVSGRFY+DPPGFV RLN++L QI +FG+KRVT SF+AKKFCDRRRYVYL+PV
Sbjct: 117 VSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPV 176
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVE 1055
F+LDP+ H DRESV AS+GSDNEL +CLECSERGRK+ + G + E +
Sbjct: 177 FALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLI-----GKRNFEVKTAITES 231
Query: 1054 DGKFESTK-LEKPDIVARAGAGDDQLGAQDIILTKNQPETADSISMEGELRASNVDECGN 878
D + +E D+ A G + T + S+ +E NV G
Sbjct: 232 DISSNTVNAIEVSDVQAN--------GVLEDSATTSDSNKQTSVLVENTATELNVGSEGT 283
Query: 877 PSNRDSFLEER-STMQTVVHDES-NEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNL 704
+ S + S + VV ES N + + F Y +E+KARFN+IL+HYVGTHNFHN
Sbjct: 284 AKSESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNFHNF 343
Query: 703 TTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNC 524
TTR K EDP+ARR+I+SF+A+++V ++GIEFVKCEVVGQSFMLHQIRKM+GLAVA+MRNC
Sbjct: 344 TTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNC 403
Query: 523 APESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFK 344
APESL++ AL+KDV INVPTAPEVGL+LDEC FTSYN +WKD+HE ++M AY E AEDFK
Sbjct: 404 APESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDFK 463
Query: 343 MKYIYPHIASMEHKEGAVALWLHSLNHRNYPDL 245
MK IY HIAS EHK+GAVALWLHSLNHRNYPDL
Sbjct: 464 MKQIYSHIASTEHKDGAVALWLHSLNHRNYPDL 496
>ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase
[Medicago truncatula]
Length = 530
Score = 447 bits (1151), Expect = e-123
Identities = 231/406 (56%), Positives = 291/406 (71%), Gaps = 12/406 (2%)
Frame = -1
Query: 1414 VSAAAQVVSGRFYVDPPGFVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPV 1235
VSA QVVSGRFY+DPPGFV RLN++LP QI +FGFKRVT SFSAKKFCDRRRYVYL+PV
Sbjct: 116 VSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIPV 175
Query: 1234 FSLDPSAHPDRESVMASIGSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVE 1055
F+LDP H DRE+V+AS+GS+NEL +CL CSERGRK+ + SK+ ++ VE
Sbjct: 176 FALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVG----NSKRNLELEAVDVE 231
Query: 1054 DGKFESTKLEKP----DIVARAGAGDDQLGAQDII------LTKNQPETADSISMEGELR 905
+G + D+ GDD ++ I ++ + + +S E E+
Sbjct: 232 NGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKTVVSDEDEVA 291
Query: 904 ASNVDECGNPSNRDSFLEERSTMQTVVHDESNEQLTAK--TKFCYDDEQKARFNQILQHY 731
N G N LEE ++ N + TA + FCY ++++ RFN IL+ Y
Sbjct: 292 PIN----GGSENNLGILEE---------EKVNREDTAANGSGFCYGEKERERFNNILKCY 338
Query: 730 VGTHNFHNLTTRIKPEDPSARRYIISFNANSVVCIDGIEFVKCEVVGQSFMLHQIRKMIG 551
VGTHNFHN TTRIKPEDPSA+R+IISF+A++ V ++G+EFVKCE+VGQSFMLHQIRKM+G
Sbjct: 339 VGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMG 398
Query: 550 LAVAVMRNCAPESLMDVALRKDVRINVPTAPEVGLFLDECQFTSYNNQWKDSHEPLTMDA 371
LAVA+MRNCAPESL++ AL+KDV I VPTAPEVGL+LDEC FTSYN +WKD+HE ++M A
Sbjct: 399 LAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKA 458
Query: 370 YAEEAEDFKMKYIYPHIASMEHKEGAVALWLHSLNHRNYPDLGFME 233
Y +EAEDFKM+YIYPHIAS E+KEG V LWLHSLNHRNYPDL ++
Sbjct: 459 YEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILD 504