BLASTX nr result
ID: Zingiber24_contig00022898
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00022898
(425 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24510.3| unnamed protein product [Vitis vinifera] 112 5e-23
ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation spec... 112 5e-23
gb|EXC20897.1| Cleavage and polyadenylation specificity factor s... 105 5e-21
ref|XP_004308159.1| PREDICTED: cleavage and polyadenylation spec... 105 8e-21
gb|EOY22974.1| Cleavage and polyadenylation specificity factor 1... 104 1e-20
gb|EMJ21509.1| hypothetical protein PRUPE_ppa000211mg [Prunus pe... 103 2e-20
ref|XP_002510905.1| cleavage and polyadenylation specificity fac... 103 2e-20
ref|XP_006401932.1| hypothetical protein EUTSA_v10012441mg [Eutr... 102 7e-20
ref|XP_002864120.1| hypothetical protein ARALYDRAFT_495232 [Arab... 100 3e-19
ref|XP_006490256.1| PREDICTED: cleavage and polyadenylation spec... 98 1e-18
ref|XP_006490255.1| PREDICTED: cleavage and polyadenylation spec... 98 1e-18
ref|XP_006421760.1| hypothetical protein CICLE_v10004147mg [Citr... 98 1e-18
ref|XP_006421759.1| hypothetical protein CICLE_v10004147mg [Citr... 98 1e-18
ref|XP_004514987.1| PREDICTED: cleavage and polyadenylation spec... 97 2e-18
ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation spec... 97 2e-18
dbj|BAB11613.1| cleavage and polyadenylation specificity factor ... 96 4e-18
ref|NP_199979.2| cleavage and polyadenylation specificity factor... 96 4e-18
tpg|DAA38372.1| TPA: hypothetical protein ZEAMMB73_993613 [Zea m... 96 4e-18
gb|AAN41460.1| putative cleavage and polyadenylation specificity... 96 4e-18
gb|ESW24391.1| hypothetical protein PHAVU_004G126600g [Phaseolus... 96 5e-18
>emb|CBI24510.3| unnamed protein product [Vitis vinifera]
Length = 1448
Score = 112 bits (280), Expect = 5e-23
Identities = 54/78 (69%), Positives = 68/78 (87%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 370
MSYAA+KMMH TGIE+CASGFVTHS ++ P +I PI +DDL+S EWP +R++GP+PNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAP-QIAPIQTDDLES-EWPTKRQIGPLPNL 58
Query: 371 VVTAANVLEVYLVRVQED 424
+VTAAN+LEVY+VRVQED
Sbjct: 59 IVTAANILEVYMVRVQED 76
>ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Vitis vinifera]
Length = 1442
Score = 112 bits (280), Expect = 5e-23
Identities = 54/78 (69%), Positives = 68/78 (87%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 370
MSYAA+KMMH TGIE+CASGFVTHS ++ P +I PI +DDL+S EWP +R++GP+PNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAP-QIAPIQTDDLES-EWPTKRQIGPLPNL 58
Query: 371 VVTAANVLEVYLVRVQED 424
+VTAAN+LEVY+VRVQED
Sbjct: 59 IVTAANILEVYMVRVQED 76
>gb|EXC20897.1| Cleavage and polyadenylation specificity factor subunit 1 [Morus
notabilis]
Length = 1479
Score = 105 bits (263), Expect = 5e-21
Identities = 54/79 (68%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWP-GERRVGPVPN 367
MS+AA+KMMH TGIE+CA+GFV+HS ++ P IPPI SDDLD S+WP G R GPVPN
Sbjct: 1 MSFAAYKMMHWPTGIENCAAGFVSHSRADFVP-RIPPIQSDDLD-SDWPAGRRETGPVPN 58
Query: 368 LVVTAANVLEVYLVRVQED 424
LVVTA NVLEVY+VR+QE+
Sbjct: 59 LVVTAGNVLEVYVVRLQEE 77
>ref|XP_004308159.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Fragaria vesca subsp. vesca]
Length = 1439
Score = 105 bits (261), Expect = 8e-21
Identities = 55/78 (70%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 367
MSYAA KMMH TGIE+CA+GF+THS ++ P IP I +DDLDS +WP RR +GPVPN
Sbjct: 1 MSYAAHKMMHWPTGIENCAAGFITHSRADFVP-RIPQIQTDDLDS-DWPAPRREIGPVPN 58
Query: 368 LVVTAANVLEVYLVRVQE 421
LVVTAANVLEVY+VRVQE
Sbjct: 59 LVVTAANVLEVYVVRVQE 76
>gb|EOY22974.1| Cleavage and polyadenylation specificity factor 160 isoform 1
[Theobroma cacao]
Length = 1457
Score = 104 bits (260), Expect = 1e-20
Identities = 51/78 (65%), Positives = 65/78 (83%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 370
MSYAA+KMMH TGIE+CASGFVTH ++ TP +IP ++DL+S EWP R +GPVPNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHCRADFTP-QIPLNQTEDLES-EWPARRGIGPVPNL 58
Query: 371 VVTAANVLEVYLVRVQED 424
+VTAAN+LE+Y+VRVQE+
Sbjct: 59 IVTAANLLEIYVVRVQEE 76
>gb|EMJ21509.1| hypothetical protein PRUPE_ppa000211mg [Prunus persica]
Length = 1459
Score = 103 bits (257), Expect = 2e-20
Identities = 52/79 (65%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 367
MS+AA+KMMH TGIE+CASGF++HS S+ P IPPI ++DL+S EWP RR +GP+P+
Sbjct: 1 MSFAAYKMMHWPTGIENCASGFISHSRSDFVP-RIPPIQTEDLES-EWPTSRREIGPIPD 58
Query: 368 LVVTAANVLEVYLVRVQED 424
LVVTA NVLEVY+VRVQE+
Sbjct: 59 LVVTAGNVLEVYVVRVQEE 77
>ref|XP_002510905.1| cleavage and polyadenylation specificity factor cpsf, putative
[Ricinus communis] gi|223550020|gb|EEF51507.1| cleavage
and polyadenylation specificity factor cpsf, putative
[Ricinus communis]
Length = 1461
Score = 103 bits (257), Expect = 2e-20
Identities = 49/78 (62%), Positives = 64/78 (82%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 370
MSYAA+KM+H TGIE CASG++THS ++ P +IPPI +D+LDS P +R +GP+PNL
Sbjct: 1 MSYAAYKMLHWPTGIESCASGYITHSRADFVP-QIPPIQTDNLDSEWPPSKRGIGPMPNL 59
Query: 371 VVTAANVLEVYLVRVQED 424
+VTA +VLEVY+VRVQED
Sbjct: 60 IVTAGSVLEVYVVRVQED 77
>ref|XP_006401932.1| hypothetical protein EUTSA_v10012441mg [Eutrema salsugineum]
gi|557103022|gb|ESQ43385.1| hypothetical protein
EUTSA_v10012441mg [Eutrema salsugineum]
Length = 1445
Score = 102 bits (253), Expect = 7e-20
Identities = 47/79 (59%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 367
MS+AAFKMMH TG+E+CASG++THS S++T +IP ++ DDL+ +EWP +R +G VPN
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSISDTTTQQIPIVSGDDLE-AEWPAPKRGIGAVPN 59
Query: 368 LVVTAANVLEVYLVRVQED 424
+V+TA N+LEVY+VRVQE+
Sbjct: 60 VVITAGNILEVYVVRVQEE 78
>ref|XP_002864120.1| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp.
lyrata] gi|297309955|gb|EFH40379.1| hypothetical protein
ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata]
Length = 1444
Score = 99.8 bits (247), Expect = 3e-19
Identities = 46/79 (58%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 367
MS+AAFKMMH TG+E+CASG++THS S+ST +IP ++ DD +EWP +R +GP+PN
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSLSDST-LQIPIVSGDDDMEAEWPNHKRGIGPLPN 59
Query: 368 LVVTAANVLEVYLVRVQED 424
+V+TA N+LEVY+VR QE+
Sbjct: 60 VVITAGNILEVYIVRAQEE 78
>ref|XP_006490256.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X2 [Citrus sinensis]
Length = 1457
Score = 97.8 bits (242), Expect = 1e-18
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 370
MS+AA+KMMH TGI +C SGF+THS ++ P +IP I +++LDS E P +R +GPVPNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVP-QIPLIQTEELDS-ELPSKRGIGPVPNL 58
Query: 371 VVTAANVLEVYLVRVQED 424
VVTAANV+E+Y+VRVQE+
Sbjct: 59 VVTAANVIEIYVVRVQEE 76
>ref|XP_006490255.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X1 [Citrus sinensis]
Length = 1458
Score = 97.8 bits (242), Expect = 1e-18
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 370
MS+AA+KMMH TGI +C SGF+THS ++ P +IP I +++LDS E P +R +GPVPNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVP-QIPLIQTEELDS-ELPSKRGIGPVPNL 58
Query: 371 VVTAANVLEVYLVRVQED 424
VVTAANV+E+Y+VRVQE+
Sbjct: 59 VVTAANVIEIYVVRVQEE 76
>ref|XP_006421760.1| hypothetical protein CICLE_v10004147mg [Citrus clementina]
gi|557523633|gb|ESR35000.1| hypothetical protein
CICLE_v10004147mg [Citrus clementina]
Length = 1457
Score = 97.8 bits (242), Expect = 1e-18
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 370
MS+AA+KMMH TGI +C SGF+THS ++ P +IP I +++LDS E P +R +GPVPNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVP-QIPLIQTEELDS-ELPSKRGIGPVPNL 58
Query: 371 VVTAANVLEVYLVRVQED 424
VVTAANV+E+Y+VRVQE+
Sbjct: 59 VVTAANVIEIYVVRVQEE 76
>ref|XP_006421759.1| hypothetical protein CICLE_v10004147mg [Citrus clementina]
gi|557523632|gb|ESR34999.1| hypothetical protein
CICLE_v10004147mg [Citrus clementina]
Length = 1458
Score = 97.8 bits (242), Expect = 1e-18
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 370
MS+AA+KMMH TGI +C SGF+THS ++ P +IP I +++LDS E P +R +GPVPNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVP-QIPLIQTEELDS-ELPSKRGIGPVPNL 58
Query: 371 VVTAANVLEVYLVRVQED 424
VVTAANV+E+Y+VRVQE+
Sbjct: 59 VVTAANVIEIYVVRVQEE 76
>ref|XP_004514987.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Cicer arietinum]
Length = 1447
Score = 97.1 bits (240), Expect = 2e-18
Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 3/81 (3%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPI---NSDDLDSSEWPGERRVGPV 361
MS+AA+KMM TGI++CASGF+THS S+STP IPPI + DD+DS P R + P+
Sbjct: 1 MSFAAYKMMQWPTGIQNCASGFLTHSRSDSTP-RIPPIQHNDDDDIDSDWVPQPRDLAPL 59
Query: 362 PNLVVTAANVLEVYLVRVQED 424
PNLV+TAAN+LEVY VR+Q+D
Sbjct: 60 PNLVITAANILEVYTVRIQQD 80
>ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X1 [Glycine max]
Length = 1449
Score = 97.1 bits (240), Expect = 2e-18
Identities = 49/80 (61%), Positives = 61/80 (76%), Gaps = 2/80 (2%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR--VGPVP 364
MS+AA+KMM TGI++CA+GF+THS S + P+ DDLD++EWP R VGP+P
Sbjct: 1 MSFAAYKMMQCPTGIDNCAAGFLTHSRS-----DFVPLQPDDLDAAEWPSRPRHHVGPLP 55
Query: 365 NLVVTAANVLEVYLVRVQED 424
NLVVTAANVLEVY VR+QED
Sbjct: 56 NLVVTAANVLEVYAVRLQED 75
>dbj|BAB11613.1| cleavage and polyadenylation specificity factor subunit
[Arabidopsis thaliana]
Length = 1448
Score = 96.3 bits (238), Expect = 4e-18
Identities = 45/79 (56%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 367
MS+AA+KMMH TG+E+CASG++THS S+ST +IP ++ D +EWP +R +GP+PN
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDST-LQIPIVSVHDDIEAEWPNPKRGIGPLPN 59
Query: 368 LVVTAANVLEVYLVRVQED 424
+V+TAAN+LEVY+VR QE+
Sbjct: 60 VVITAANILEVYIVRAQEE 78
>ref|NP_199979.2| cleavage and polyadenylation specificity factor subunit 1
[Arabidopsis thaliana]
gi|290457637|sp|Q9FGR0.2|CPSF1_ARATH RecName:
Full=Cleavage and polyadenylation specificity factor
subunit 1; AltName: Full=Cleavage and polyadenylation
specificity factor 160 kDa subunit; Short=AtCPSF160;
Short=CPSF 160 kDa subunit gi|332008729|gb|AED96112.1|
cleavage and polyadenylation specificity factor subunit
1 [Arabidopsis thaliana]
Length = 1442
Score = 96.3 bits (238), Expect = 4e-18
Identities = 45/79 (56%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 367
MS+AA+KMMH TG+E+CASG++THS S+ST +IP ++ D +EWP +R +GP+PN
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDST-LQIPIVSVHDDIEAEWPNPKRGIGPLPN 59
Query: 368 LVVTAANVLEVYLVRVQED 424
+V+TAAN+LEVY+VR QE+
Sbjct: 60 VVITAANILEVYIVRAQEE 78
>tpg|DAA38372.1| TPA: hypothetical protein ZEAMMB73_993613 [Zea mays]
Length = 573
Score = 96.3 bits (238), Expect = 4e-18
Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 7/83 (8%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSN----STPAEIPPINS---DDLDSSEWPGERR 349
MSYAA+KMMHL TGI+HCA+GF+THSP++ STPA P + D+DS+ RR
Sbjct: 1 MSYAAYKMMHLPTGIDHCAAGFITHSPADAAAFSTPAPAPTAAAGPDGDIDSTAARAPRR 60
Query: 350 VGPVPNLVVTAANVLEVYLVRVQ 418
VGP PNLVV+AANVLEVY VR +
Sbjct: 61 VGPTPNLVVSAANVLEVYAVRAE 83
>gb|AAN41460.1| putative cleavage and polyadenylation specificity factor 160 kDa
subunit [Arabidopsis thaliana]
Length = 1442
Score = 96.3 bits (238), Expect = 4e-18
Identities = 45/79 (56%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 367
MS+AA+KMMH TG+E+CASG++THS S+ST +IP ++ D +EWP +R +GP+PN
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDST-LQIPIVSVHDDIEAEWPNPKRGIGPLPN 59
Query: 368 LVVTAANVLEVYLVRVQED 424
+V+TAAN+LEVY+VR QE+
Sbjct: 60 VVITAANILEVYIVRAQEE 78
>gb|ESW24391.1| hypothetical protein PHAVU_004G126600g [Phaseolus vulgaris]
Length = 1445
Score = 95.9 bits (237), Expect = 5e-18
Identities = 49/79 (62%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Frame = +2
Query: 191 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGE-RRVGPVPN 367
MS+AA+KMM +TGI++CA+GF+THS ++S P + +DLD+ EWP RRVGP+PN
Sbjct: 1 MSFAAYKMMQCSTGIDNCAAGFLTHSRADSVP-----LQPEDLDA-EWPSRPRRVGPLPN 54
Query: 368 LVVTAANVLEVYLVRVQED 424
LVVTAANVLEVY VR+QED
Sbjct: 55 LVVTAANVLEVYTVRIQED 73