BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00022858
         (975 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACJ63313.1| RNA polymerase I large subunit [Drimys winteri]        476   e-132
ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [A...   470   e-130
gb|AAS55440.1| RNA polymerase I largest subunit [Amborella trich...   464   e-128
gb|AAS55443.1| RNA polymerase I largest subunit [Cycas revoluta]      462   e-128
gb|AAS55442.1| RNA polymerase I largest subunit [Pinus nigra]         460   e-127
gb|ACJ63312.1| RNA polymerase I large subunit [Ceratophyllum dem...   458   e-126
gb|AAS55436.1| RNA polymerase I largest subunit [Podocarpus macr...   455   e-125
gb|AAS55444.1| RNA polymerase I largest subunit [Zamia muricata]      453   e-125
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub...   452   e-125
gb|ACJ63314.1| RNA polymerase I large subunit [Illicium parviflo...   451   e-124
gb|AAS55438.1| RNA polymerase I largest subunit [Welwitschia mir...   450   e-124
gb|AAS55445.1| RNA polymerase I largest subunit [Ginkgo biloba]       448   e-123
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   442   e-121
gb|AAS55437.1| RNA polymerase I largest subunit [Taxus canadensis]    434   e-119
gb|ACJ63315.1| RNA polymerase I large subunit [Liriodendron tuli...   433   e-119
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub...   432   e-118
gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza...   432   e-118
gb|ACJ63316.1| RNA polymerase I large subunit [Nymphaea odorata]      429   e-118
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              428   e-117
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   428   e-117

>gb|ACJ63313.1| RNA polymerase I large subunit [Drimys winteri]
          Length = 539

 Score =  476 bits (1225), Expect = e-132
 Identities = 235/325 (72%), Positives = 268/325 (82%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            +TRG  PFT++K GRI +EY G ++ ++ L I  NEL+HG+IDKAQFG YGLVH V ELY
Sbjct: 119  ITRGRPPFTVKKTGRIPREYFGINNGEIKLLIQKNELVHGVIDKAQFGKYGLVHTVQELY 178

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G D AG LLSVFSRLFT FLQMHGFTCGVDDLL+ + SD ER   L  +E + E VH +F
Sbjct: 179  GSDTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIFQQSDRERTMKLGNAEKIGEHVHSQF 238

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
               KD   DP  LQ EIE+VLR +G+SA A LDR+MS+A+N LTSE+N  LFP GL K F
Sbjct: 239  VGAKDGGIDPKTLQMEIERVLRSNGDSAIASLDRLMSSALNRLTSEVNNRLFPRGLFKPF 298

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
              NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD +SR+GG
Sbjct: 299  PRNCLSLMTTTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGG 358

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FISDRFL+GLRPQEYYFHCMAGR+GLVDTAIKTSRSGYLQRCL+KNLE LKV YD+TVRD
Sbjct: 359  FISDRFLSGLRPQEYYFHCMAGREGLVDTAIKTSRSGYLQRCLIKNLESLKVCYDHTVRD 418

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            ADGS++QF YGEDGVDV K+S+I+E
Sbjct: 419  ADGSIIQFCYGEDGVDVHKTSFIAE 443


>ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [Amborella trichopoda]
            gi|548853779|gb|ERN11762.1| hypothetical protein
            AMTR_s00022p00245030 [Amborella trichopoda]
          Length = 1600

 Score =  470 bits (1210), Expect = e-130
 Identities = 223/325 (68%), Positives = 278/325 (85%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            VTRG  PFT+++ GRI   Y G  + +  + ++ NEL+HG+IDKAQFG +GLVHAVHELY
Sbjct: 661  VTRGQPPFTVKRAGRIPAGYFGKKNGEYKVLVHKNELVHGVIDKAQFGKFGLVHAVHELY 720

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G   AG L SVF+RLFT++LQMHGFTCGVDDLL+++ ++M+R R L++SE + + VH  F
Sbjct: 721  GASAAGRLFSVFTRLFTAYLQMHGFTCGVDDLLVRQCAEMDRRRKLDESETIGDHVHSWF 780

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
               KD + DP+++Q  IEK++RG GESA A LDRMMS+A+N LTSE+N +LFP GLSKSF
Sbjct: 781  IGAKDAEMDPIRMQAAIEKLVRGKGESAIARLDRMMSSALNRLTSEVNNSLFPEGLSKSF 840

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
             +NCLSLMT++GAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD ++R+GG
Sbjct: 841  PSNCLSLMTSSGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDSAARAGG 900

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FISDRFL GLRPQEYYFHCMAGR+GLVDTAIKT+RSGYLQR L+KNLECL+V+YD+TVRD
Sbjct: 901  FISDRFLNGLRPQEYYFHCMAGREGLVDTAIKTARSGYLQRRLMKNLECLRVNYDHTVRD 960

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGS+++FIYGEDGVDV+K+S+++E
Sbjct: 961  SDGSIIEFIYGEDGVDVVKTSWLTE 985


>gb|AAS55440.1| RNA polymerase I largest subunit [Amborella trichopoda]
          Length = 542

 Score =  464 bits (1195), Expect = e-128
 Identities = 221/325 (68%), Positives = 276/325 (84%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            VTRG  PFT+++ GRI   Y G  + +  + ++ NEL+HG+IDKAQFG +GLVHAVHELY
Sbjct: 121  VTRGQPPFTVKRAGRIPAGYFGKKNGEYKVLVHKNELVHGVIDKAQFGKFGLVHAVHELY 180

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G   AG L SVF+RLFT++LQMHGFTCGVDDLL+++ ++M+R R L++SE + + VH  F
Sbjct: 181  GASAAGRLFSVFTRLFTAYLQMHGFTCGVDDLLVRQCAEMDRRRKLDESETIGDHVHSWF 240

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
               KD + DP+++Q  I K++RG GESA A LDRMMS+A+N LTSE+N +LFP GLSKSF
Sbjct: 241  IGAKDAEMDPIRMQAAIGKLVRGKGESAIARLDRMMSSALNRLTSEVNNSLFPEGLSKSF 300

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
             +NCLSLMT++GAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD ++R+GG
Sbjct: 301  PSNCLSLMTSSGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDSAARAGG 360

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
             ISDRFL GLRPQEYYFHCMAGR+GLVDTAIKT+RSGYLQR L+KNLECL+V+YD+TVRD
Sbjct: 361  SISDRFLNGLRPQEYYFHCMAGREGLVDTAIKTARSGYLQRRLMKNLECLRVNYDHTVRD 420

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGS+++FIYGEDGVDV+K+S+++E
Sbjct: 421  SDGSIIEFIYGEDGVDVVKTSWLTE 445


>gb|AAS55443.1| RNA polymerase I largest subunit [Cycas revoluta]
          Length = 547

 Score =  462 bits (1190), Expect = e-128
 Identities = 229/325 (70%), Positives = 267/325 (82%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            VTRG  PFT++K GR+  +Y G  S +L + I NNELI G++DKAQFG YGLVH V ELY
Sbjct: 121  VTRGSPPFTMKKAGRVPGDYWGKSSGELKVIIQNNELICGVLDKAQFGKYGLVHIVQELY 180

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G D AG LLSVFSRLFT +LQMHGFTCGV DLLL   ++  R++ L K+EML + VH +F
Sbjct: 181  GADAAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDYREKKLGKAEMLGDTVHSQF 240

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
              +  D  D  +++G+IEK LRG GE A+  LDR+MS+A+N +TSE+N  LFP GL K F
Sbjct: 241  IGVDGDCIDLEQMEGDIEKHLRGKGEVASNRLDRLMSSALNRVTSEVNNVLFPKGLLKPF 300

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
             +NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD  +R+GG
Sbjct: 301  PSNCLSLMTVTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRARAGG 360

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCL+KNLECLKV YDYTVRD
Sbjct: 361  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVHYDYTVRD 420

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGSV+QF YGEDG+DV+K+S ++E
Sbjct: 421  SDGSVIQFTYGEDGLDVMKTSCLTE 445


>gb|AAS55442.1| RNA polymerase I largest subunit [Pinus nigra]
          Length = 547

 Score =  460 bits (1183), Expect = e-127
 Identities = 229/325 (70%), Positives = 266/325 (81%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            +T+G  PFT++K GR+  +Y G  S +L + I NNELI G+IDKAQFG YG+VH V ELY
Sbjct: 114  ITKGRPPFTVKKSGRVPGDYWGKSSGELEVLIQNNELICGVIDKAQFGKYGMVHIVQELY 173

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G D AG LLSVFSRLFT +LQMHGFTCGV DLLL   ++ +R + LEKSE L +++H +F
Sbjct: 174  GADAAGHLLSVFSRLFTGYLQMHGFTCGVVDLLLVPQAEDDRKKKLEKSEKLGDKIHLQF 233

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
                  D D M ++ EIEKVLR  GE A++ LDR+MS+A+N +TSE+N +LFP GL K F
Sbjct: 234  LGGDRADIDVMCIEEEIEKVLRTKGEVASSRLDRLMSSALNRITSEVNNSLFPKGLLKPF 293

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
              NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD  SR+GG
Sbjct: 294  PGNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRSRAGG 353

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCL+KNLECLKV YDYTVRD
Sbjct: 354  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVYYDYTVRD 413

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGSV+QF YGEDG+DV+K S ++E
Sbjct: 414  SDGSVIQFNYGEDGLDVMKISCLTE 438


>gb|ACJ63312.1| RNA polymerase I large subunit [Ceratophyllum demersum]
          Length = 538

 Score =  458 bits (1179), Expect = e-126
 Identities = 223/325 (68%), Positives = 264/325 (81%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            +TRG  PFT+E  G+I+  Y+G++  +  L I  NELIHG+IDKAQF  YGLVH V ELY
Sbjct: 119  ITRGRQPFTVENCGKIKPNYLGSNVEEKNLLIRKNELIHGVIDKAQFEMYGLVHTVQELY 178

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G + AG LLSVFSRLFT FLQMHGFTCGVDDLL+   SD +R R L++SE +SE+ H  F
Sbjct: 179  GSNTAGVLLSVFSRLFTVFLQMHGFTCGVDDLLIIPKSDKKRSRRLKQSEKISEDAHANF 238

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
               K+  +DP+KLQ E+EKVLR HG+ A   LDRMMSNA+  LTS++   L P+GLSK F
Sbjct: 239  LGTKEGSQDPIKLQMELEKVLRRHGDVAVTRLDRMMSNALGELTSKVTNELLPNGLSKPF 298

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
              NCLSLMT TGAKG +VN  QISSLLGQQELEGKRVPRMVSGKTLPCFPPWD SSR+GG
Sbjct: 299  PKNCLSLMTTTGAKGSMVNFNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSSSRAGG 358

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            +I DR+LTGLRPQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCL+K+LE LKV YD+TVRD
Sbjct: 359  YIGDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLESLKVCYDHTVRD 418

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGS+VQF YGEDGVDV K+S++++
Sbjct: 419  SDGSIVQFTYGEDGVDVCKTSFLTQ 443


>gb|AAS55436.1| RNA polymerase I largest subunit [Podocarpus macrophyllus]
          Length = 550

 Score =  455 bits (1171), Expect = e-125
 Identities = 218/325 (67%), Positives = 270/325 (83%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            +T+G   FT+ K G++  +Y G +S +L + I NNEL+ G++DKAQFG YGLVH V EL+
Sbjct: 121  ITKGRPRFTMNKSGKVPGDYWGRNSGELDVLIQNNELVCGVVDKAQFGKYGLVHVVQELF 180

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G +VAG LLS+FSRLFT +LQMHGFTCG+ DLLL   ++  R++ILEKSE L ++VH +F
Sbjct: 181  GANVAGHLLSIFSRLFTGYLQMHGFTCGIADLLLIPQAEDGREKILEKSEKLGDKVHLQF 240

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
                 D  D + L  +IEKVLR  G++A+A LDR+MS+A+N +TS++N ++FP GL KSF
Sbjct: 241  LGGDQDRTDLLNLGEDIEKVLRNKGDAASARLDRLMSSALNRITSDVNNSIFPKGLLKSF 300

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
             +NCLSLMT +GAKGGLVN TQISSLLGQQELEGKRVPRM+SGKTLPCFPPWD  +R+GG
Sbjct: 301  PSNCLSLMTTSGAKGGLVNFTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTRARAGG 360

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FISDRFLTGLRPQEYYFHCMAGRDGLVDTA+KTSRSGYLQRCL+KNLECLKV YDYTVRD
Sbjct: 361  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLKVYYDYTVRD 420

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGS++QF YGEDGVDV+K+S +++
Sbjct: 421  SDGSIIQFHYGEDGVDVMKTSCLTQ 445


>gb|AAS55444.1| RNA polymerase I largest subunit [Zamia muricata]
          Length = 551

 Score =  453 bits (1165), Expect = e-125
 Identities = 224/325 (68%), Positives = 263/325 (80%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            VT+G  PFT++K G++  +Y G  S +L   I NNELI G+IDKAQFG YGLVH V ELY
Sbjct: 121  VTKGHPPFTMKKAGKVPGDYWGKSSGELKAVIQNNELICGVIDKAQFGKYGLVHTVQELY 180

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G   AG LLSVFSRLFT +LQMHGFTCGV DLLL   ++ +R++ LEKSE L + VH +F
Sbjct: 181  GAGTAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDREKKLEKSETLGDSVHSQF 240

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
                 D ++   ++ +IEK LR  GE A++ LDR+MS+A+N LTS++N  LFP GL K F
Sbjct: 241  IGADGDQREFEGMEEDIEKHLRSKGEVASSRLDRLMSSALNRLTSDVNNGLFPKGLLKPF 300

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
             +NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD  +R+GG
Sbjct: 301  PSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRARAGG 360

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FI DRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCL+KNLECLKV YDYTVRD
Sbjct: 361  FIGDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVHYDYTVRD 420

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGSV+QF YGEDG+DV+K+S ++E
Sbjct: 421  SDGSVIQFTYGEDGLDVMKTSCLTE 445


>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
            [Brachypodium distachyon]
          Length = 1868

 Score =  452 bits (1163), Expect = e-125
 Identities = 225/336 (66%), Positives = 271/336 (80%), Gaps = 11/336 (3%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYI-----------GNDSAQLVLHIYNNELIHGMIDKAQFGT 829
            +T+G  PFT+EKKG+I  +Y+             DS Q VL+I++NELI GMIDK QFG 
Sbjct: 928  LTKGHPPFTVEKKGKIPVKYLIPKERHGDKDNAKDSEQ-VLYIHDNELIKGMIDKDQFGN 986

Query: 828  YGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKS 649
            YG+VH V+ELYG + AG LLS+FSRLFT FLQ+HGFTCG+DDLLL + SD +R   L  S
Sbjct: 987  YGIVHTVYELYGAETAGRLLSIFSRLFTLFLQLHGFTCGIDDLLLFQESDKQRTETLMTS 1046

Query: 648  EMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQ 469
            E  SEEVHR+FT   D D+DP+KLQ E+EKV+R  GESAT  LD+MM +A+N L SE+N+
Sbjct: 1047 EKCSEEVHRKFTCAGDYDEDPLKLQMEVEKVVRRIGESATDTLDKMMLSALNGLQSEVNR 1106

Query: 468  TLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCF 289
             LFP GL K F  NCL+LMTATGAKGG VNMTQI+SLLG Q+LEG RVPRM+SGK+LPCF
Sbjct: 1107 RLFPYGLQKPFPRNCLTLMTATGAKGGEVNMTQITSLLGSQDLEGARVPRMISGKSLPCF 1166

Query: 288  PPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLEC 109
            PPWD SSR+GGF+SDRFLTGLRPQEYYFHCMAGR+GL+DTA+KTSRSGYLQRCLVK+LE 
Sbjct: 1167 PPWDTSSRAGGFVSDRFLTGLRPQEYYFHCMAGRNGLIDTAVKTSRSGYLQRCLVKSLES 1226

Query: 108  LKVSYDYTVRDADGSVVQFIYGEDGVDVLKSSYISE 1
            L V+YD+TVR+ DGS+VQF YGEDGVDV KS+++ +
Sbjct: 1227 LFVAYDHTVRNVDGSIVQFRYGEDGVDVHKSNFLDK 1262


>gb|ACJ63314.1| RNA polymerase I large subunit [Illicium parviflorum]
          Length = 540

 Score =  451 bits (1160), Expect = e-124
 Identities = 221/325 (68%), Positives = 266/325 (81%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            VT+G +PFT+++ G++  +Y G +S +L + I NNELI G+IDKAQFG +GLVH V ELY
Sbjct: 119  VTKGSVPFTMKRAGKVPGDYWGKNSGELKVRIQNNELICGVIDKAQFGKHGLVHIVQELY 178

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G DVAG LLSVFSRLFT +LQMHGFTCGV DLLL   ++ +R + LEKSE L + VH +F
Sbjct: 179  GADVAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDRQKKLEKSEELGDNVHFQF 238

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
                 D  D   ++ E EK LR  G++A+A LDR+MS+A+N +TSE+N  LFP GL K F
Sbjct: 239  IGANGDQIDLESMEEETEKHLRSKGDAASARLDRLMSSALNRVTSEVNNALFPKGLLKPF 298

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
             +NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPR++SGKTLPCF PWD  +R+GG
Sbjct: 299  PSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRVISGKTLPCFLPWDSRARAGG 358

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKT+RSGYLQRCL+KNLECLKV YDYTVRD
Sbjct: 359  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTTRSGYLQRCLIKNLECLKVYYDYTVRD 418

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGSV+QF YGEDG+DV+K+S +++
Sbjct: 419  SDGSVIQFNYGEDGLDVMKTSCLTQ 443


>gb|AAS55438.1| RNA polymerase I largest subunit [Welwitschia mirabilis]
          Length = 543

 Score =  450 bits (1158), Expect = e-124
 Identities = 221/324 (68%), Positives = 265/324 (81%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            +T+G LPF+ +K GR+  +Y G DS ++ + I +NELI G+IDKAQFG YGLVH VHELY
Sbjct: 121  ITKGTLPFSSKKAGRVPPDYWGRDSGEIEVLIRDNELICGVIDKAQFGKYGLVHIVHELY 180

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G D AG LLSVFSRLFT+FLQMHGFTCG  DLLL   ++ ER + LEK++ L ++VH +F
Sbjct: 181  GADAAGRLLSVFSRLFTAFLQMHGFTCGAVDLLLVPKAENERRKKLEKAKKLGDKVHLQF 240

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
              +   +    +++ EIEK+LR  GE+A+A LDR+MS+A+N +TS++N +LFP GL   F
Sbjct: 241  LGLSGQELGEGQMEEEIEKILRSKGETASARLDRLMSSALNGVTSDVNNSLFPKGLLVPF 300

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
              NCLSLMT TGAKGG+VN TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD S R+GG
Sbjct: 301  PKNCLSLMTTTGAKGGMVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFSPWDSSPRAGG 360

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FISDRFLTGLR QEYYFHCMAGRDGLVDTA+KTSRSGYLQRCL+KNLECL V YD+TVRD
Sbjct: 361  FISDRFLTGLRLQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRD 420

Query: 75   ADGSVVQFIYGEDGVDVLKSSYIS 4
            +DGSVVQFIYGEDGVDV K+S ++
Sbjct: 421  SDGSVVQFIYGEDGVDVTKTSCLT 444


>gb|AAS55445.1| RNA polymerase I largest subunit [Ginkgo biloba]
          Length = 542

 Score =  448 bits (1153), Expect = e-123
 Identities = 221/325 (68%), Positives = 264/325 (81%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY 796
            VT+G +PFT+++ G++  +Y G +S +L + I NNELI G+IDKAQFG +GLVH V ELY
Sbjct: 121  VTKGSVPFTMKRAGKVPGDYWGKNSGELKVRIQNNELICGVIDKAQFGKHGLVHIVQELY 180

Query: 795  GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF 616
            G DVAG LLSVFSRLFT +LQMHGFTCGV DLLL   ++ +R + LEKSE L + VH +F
Sbjct: 181  GADVAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDRQKKLEKSEELGDNVHFQF 240

Query: 615  TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF 436
                 D  D   ++ E EK LR  G++A+A LDR+MS+A+N +TSE+N  LFP GL K F
Sbjct: 241  IGANGDQIDLESMEEETEKHLRSKGDAASARLDRLMSSALNRVTSEVNNALFPKGLLKPF 300

Query: 435  LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG 256
             +NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRM+SGKTLPCF PWD  +R+GG
Sbjct: 301  PSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMISGKTLPCFLPWDSRARAGG 360

Query: 255  FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD 76
            FISDRFLTGLRPQEYYF CMA RDGLVDTAIKTSRSGYLQRCL+KNLECLKV YDYTVRD
Sbjct: 361  FISDRFLTGLRPQEYYFQCMAARDGLVDTAIKTSRSGYLQRCLIKNLECLKVYYDYTVRD 420

Query: 75   ADGSVVQFIYGEDGVDVLKSSYISE 1
            +DGSV+QF YGEDG+DV+K+S +++
Sbjct: 421  SDGSVIQFNYGEDGLDVMKTSCLTQ 445


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  442 bits (1136), Expect = e-121
 Identities = 223/337 (66%), Positives = 267/337 (79%), Gaps = 12/337 (3%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDS------------AQLVLHIYNNELIHGMIDKAQFG 832
            +T+G  PFT+E+KG+I +E++                ++LVL+I NNELI GMIDKAQFG
Sbjct: 731  LTKGRSPFTVEQKGKISEEHLTPKKFEESESERKIAISELVLYIKNNELIKGMIDKAQFG 790

Query: 831  TYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEK 652
             YG+VH VHELYG D AG LLS FSRLFT FLQ HGFTCGVDDLLL + +D  R  I+ +
Sbjct: 791  QYGIVHTVHELYGADTAGILLSTFSRLFTLFLQFHGFTCGVDDLLLCQKADEARRSIISE 850

Query: 651  SEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEIN 472
            S+  SE+ H  F +     KD  +LQ E+EKV+R  GESAT  +DR +SNA++++TS++N
Sbjct: 851  SDKYSEKAHGTFIKT---GKDGEELQMEVEKVIRRDGESATVNMDREISNALSNITSDVN 907

Query: 471  QTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPC 292
            + +FP GL K F  NCL+LMTATGAKGG VNM QISSLLGQQELEGKRVPRMVSGKTLPC
Sbjct: 908  KNVFPYGLQKPFPGNCLTLMTATGAKGGDVNMYQISSLLGQQELEGKRVPRMVSGKTLPC 967

Query: 291  FPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLE 112
            F PWD SSR+GGFISDRFLTGLRPQEYYFHCMAGR+GL DTA+KTSRSGYLQRCL+K LE
Sbjct: 968  FLPWDTSSRAGGFISDRFLTGLRPQEYYFHCMAGREGLCDTAVKTSRSGYLQRCLIKCLE 1027

Query: 111  CLKVSYDYTVRDADGSVVQFIYGEDGVDVLKSSYISE 1
             LKVSYD+TVRD DGS+VQF YGEDGVDVLK+S++++
Sbjct: 1028 SLKVSYDHTVRDVDGSIVQFCYGEDGVDVLKTSFLNK 1064


>gb|AAS55437.1| RNA polymerase I largest subunit [Taxus canadensis]
          Length = 545

 Score =  434 bits (1117), Expect = e-119
 Identities = 214/318 (67%), Positives = 260/318 (81%)
 Frame = -1

Query: 954  FTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELYGPDVAGT 775
            F  E+   +  +Y G  S +L + I NNE I G+IDKAQFG YGLVH V ELYG +VAG 
Sbjct: 127  FYHEQIWEVPGDYWGKSSGELDVVIQNNEHICGIIDKAQFGKYGLVHIVQELYGANVAGH 186

Query: 774  LLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRFTRMKDDD 595
            LLS+FSRLFT +LQMHGFTCG+ DLLLK  +++ R +IL KSE L E+VH +F      +
Sbjct: 187  LLSIFSRLFTGYLQMHGFTCGIADLLLKPGAEVRRQKILAKSEDLGEKVHLQFL---GGN 243

Query: 594  KDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSFLTNCLSL 415
            +D + +  +IEK+LR  GE+A+A LDR+MS+A+N +TS++N +LFP GL K F +NCLSL
Sbjct: 244  EDLVHMGEDIEKLLRSKGETASARLDRLMSSALNRITSDVNNSLFPKGLLKPFPSNCLSL 303

Query: 414  MTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGGFISDRFL 235
            MT TGAKGGLV+ TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD  +R+GGFISDRFL
Sbjct: 304  MTTTGAKGGLVDFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDTRARAGGFISDRFL 363

Query: 234  TGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRDADGSVVQ 55
            TGLRPQEYYFHCMAGRDGLVDTA+KTSRSGYLQRCL+KNLECLKV YDYT+RD+DGS++Q
Sbjct: 364  TGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLKVYYDYTIRDSDGSIIQ 423

Query: 54   FIYGEDGVDVLKSSYISE 1
            F YGEDGVDV+K+S +++
Sbjct: 424  FYYGEDGVDVMKTSCLTQ 441


>gb|ACJ63315.1| RNA polymerase I large subunit [Liriodendron tulipifera]
          Length = 558

 Score =  433 bits (1114), Expect = e-119
 Identities = 219/350 (62%), Positives = 260/350 (74%), Gaps = 25/350 (7%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQK-------------------------EYIGNDSAQLVLHIYNN 871
            +TRG  PFT++K+G+I+                          ++  +   +  L I+ N
Sbjct: 119  ITRGHPPFTVKKEGKIEDGCFYSEWKEGNMVDGVKKEIVEGCFKHCKSKGKKHKLIIWKN 178

Query: 870  ELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLK 691
            EL+HG+IDK QF  YG+VH V ELYG + AG LLSV SRLFT FLQMHGFTCGVDDLL+ 
Sbjct: 179  ELVHGVIDKNQFAKYGMVHTVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIV 238

Query: 690  RSSDMERDRILEKSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRM 511
            + SD++R  ILEK E +   VH +    K  +  PMKLQ EIE+ +R HGESA   LD +
Sbjct: 239  QQSDLKRQMILEKHENIGTNVHSKLIGAKITE--PMKLQMEIERAIRSHGESAVTYLDML 296

Query: 510  MSNAMNSLTSEINQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGK 331
            MS+ +N +T+EIN  + PSGL K F  NCLSLMT TGAKG  VN TQISSLLGQQ+LEGK
Sbjct: 297  MSHELNGVTTEINDAIIPSGLLKPFPRNCLSLMTTTGAKGSQVNFTQISSLLGQQQLEGK 356

Query: 330  RVPRMVSGKTLPCFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSR 151
            RVPRMVSGKTLPCFPPWD ++R+GGFI DRFLTGLRPQEYYFHCMAGR+GLVDTAIKTSR
Sbjct: 357  RVPRMVSGKTLPCFPPWDTAARAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAIKTSR 416

Query: 150  SGYLQRCLVKNLECLKVSYDYTVRDADGSVVQFIYGEDGVDVLKSSYISE 1
            SGYLQRCL+KNLECL+V YD+TVRDADGSVVQF YGEDGVDV K+S+I+E
Sbjct: 417  SGYLQRCLIKNLECLRVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFITE 466


>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
            brachyantha]
          Length = 1755

 Score =  432 bits (1110), Expect = e-118
 Identities = 221/337 (65%), Positives = 257/337 (76%), Gaps = 35/337 (10%)
 Frame = -1

Query: 906  DSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMH 727
            D ++LVL++++NELI GMIDKAQFG  G+VH VHELYGPD AG LLS FSRLFT  LQ H
Sbjct: 796  DRSELVLYVHDNELIKGMIDKAQFGKDGIVHTVHELYGPDAAGVLLSSFSRLFTMVLQFH 855

Query: 726  GFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF-------------TRMKDDDK-- 592
            GFTCGVDDLLL ++SD  R  IL  SE  S+ VH+ F             TR K+D K  
Sbjct: 856  GFTCGVDDLLLCQASDELRKEILGTSEECSKIVHKEFICPQNKKGDEAEDTRPKEDGKAE 915

Query: 591  --------------------DPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEIN 472
                                D +KLQ E+E+V+R + ESAT +LDR MSN +N +TS++N
Sbjct: 916  DMCLKEDNEAEDTRSKEGVEDQVKLQMEVERVIRRNRESATVMLDRKMSNTLNVITSKVN 975

Query: 471  QTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPC 292
            Q LFP GL K F  NCLSLMT TGAKGGLVNMTQISSLLGQQELEGKRVPRM+SGKTLPC
Sbjct: 976  QELFPYGLQKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQELEGKRVPRMISGKTLPC 1035

Query: 291  FPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLE 112
            FP WD S+R+GGFISDRFLTGLRPQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCL+K+LE
Sbjct: 1036 FPSWDTSARAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLE 1095

Query: 111  CLKVSYDYTVRDADGSVVQFIYGEDGVDVLKSSYISE 1
             LKVSYD+TVRD DGS++QF YGEDGVDVLK+S++ +
Sbjct: 1096 SLKVSYDHTVRDVDGSIIQFCYGEDGVDVLKTSFLDK 1132


>gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
          Length = 1138

 Score =  432 bits (1110), Expect = e-118
 Identities = 221/337 (65%), Positives = 257/337 (76%), Gaps = 35/337 (10%)
 Frame = -1

Query: 906  DSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMH 727
            D ++LVL++++NELI GMIDKAQFG  G+VH VHELYGPD AG LLS FSRLFT  LQ H
Sbjct: 796  DRSELVLYVHDNELIKGMIDKAQFGKDGIVHTVHELYGPDAAGVLLSSFSRLFTMVLQFH 855

Query: 726  GFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF-------------TRMKDDDK-- 592
            GFTCGVDDLLL ++SD  R  IL  SE  S+ VH+ F             TR K+D K  
Sbjct: 856  GFTCGVDDLLLCQASDELRKEILGTSEECSKIVHKEFICPQNKKGDEAEDTRPKEDGKAE 915

Query: 591  --------------------DPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEIN 472
                                D +KLQ E+E+V+R + ESAT +LDR MSN +N +TS++N
Sbjct: 916  DMCLKEDNEAEDTRSKEGVEDQVKLQMEVERVIRRNRESATVMLDRKMSNTLNVITSKVN 975

Query: 471  QTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPC 292
            Q LFP GL K F  NCLSLMT TGAKGGLVNMTQISSLLGQQELEGKRVPRM+SGKTLPC
Sbjct: 976  QELFPYGLQKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQELEGKRVPRMISGKTLPC 1035

Query: 291  FPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLE 112
            FP WD S+R+GGFISDRFLTGLRPQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCL+K+LE
Sbjct: 1036 FPSWDTSARAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLE 1095

Query: 111  CLKVSYDYTVRDADGSVVQFIYGEDGVDVLKSSYISE 1
             LKVSYD+TVRD DGS++QF YGEDGVDVLK+S++ +
Sbjct: 1096 SLKVSYDHTVRDVDGSIIQFCYGEDGVDVLKTSFLDK 1132


>gb|ACJ63316.1| RNA polymerase I large subunit [Nymphaea odorata]
          Length = 542

 Score =  429 bits (1104), Expect = e-118
 Identities = 221/332 (66%), Positives = 251/332 (75%), Gaps = 7/332 (2%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGNDSAQL---VLH----IYNNELIHGMIDKAQFGTYGLV 817
            V  G  PFT+E   +I    I   S Q     LH    I  NE I+G+IDKAQ+G YGLV
Sbjct: 114  VAHGLPPFTVENVAKIHDYNIIPKSCQREANTLHRKCLICKNEFIYGVIDKAQYGKYGLV 173

Query: 816  HAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLS 637
            H V ELYG + AG LLS+ SRLFT+F QMHGFTCGVDD LL   +++ R     + E + 
Sbjct: 174  HMVQELYGENTAGLLLSILSRLFTAFFQMHGFTCGVDDPLLVPEAEVLRTESTNRCESIG 233

Query: 636  EEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFP 457
            E VH +F  M+ D  DP+ LQ EIE VLR +GESAT  LD +MS+ +N LT+E+N+ LFP
Sbjct: 234  ESVHSKFIGMEYDQLDPISLQREIENVLRTNGESATERLDALMSSELNELTNELNKKLFP 293

Query: 456  SGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD 277
             GL K F  NC+ LMTA+GAKG  VN  QISSLLGQQELEGKRVPRMVSGKTLPCFPPWD
Sbjct: 294  VGLVKPFPNNCVFLMTASGAKGSNVNFIQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD 353

Query: 276  VSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVS 97
             + R+GGFISDRFLTGL PQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKV 
Sbjct: 354  TAPRAGGFISDRFLTGLHPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVC 413

Query: 96   YDYTVRDADGSVVQFIYGEDGVDVLKSSYISE 1
            YDYTVRDADGS+VQF YGEDGVDVLKSS ++E
Sbjct: 414  YDYTVRDADGSIVQFYYGEDGVDVLKSSCLTE 445


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  428 bits (1101), Expect = e-117
 Identities = 216/350 (61%), Positives = 257/350 (73%), Gaps = 25/350 (7%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGND-------------------------SAQLVLHIYNN 871
            +TRG  PFT EK G+I +EY G++                           +  L I+ N
Sbjct: 723  ITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKN 782

Query: 870  ELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLK 691
            EL+ G+IDKAQF  YGLVH V ELYG + AG LLSV SRLFT FLQMHGFTCGVDDLL+ 
Sbjct: 783  ELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIS 842

Query: 690  RSSDMERDRILEKSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRM 511
             + D+ R   L+KSE + E VH +F        DP+KLQ E+EK++  +GE+A   LDRM
Sbjct: 843  PNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRM 902

Query: 510  MSNAMNSLTSEINQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGK 331
            M N +N LTS++N+ L   GL K F  NCLSLMT TGAKG  VN +QISS LGQQ+LEGK
Sbjct: 903  MKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGK 962

Query: 330  RVPRMVSGKTLPCFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSR 151
            RVPRMVSGKTLPCFPPWD ++R+GGFISDRFLTGL PQEYYFHCMAGR+GLVDTA+KTSR
Sbjct: 963  RVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSR 1022

Query: 150  SGYLQRCLVKNLECLKVSYDYTVRDADGSVVQFIYGEDGVDVLKSSYISE 1
            SGYLQRCL+KNLECLKV YDYTVRD+DGS+VQF YG+DGVDV ++S+I+E
Sbjct: 1023 SGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITE 1072


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  428 bits (1101), Expect = e-117
 Identities = 216/350 (61%), Positives = 257/350 (73%), Gaps = 25/350 (7%)
 Frame = -1

Query: 975  VTRGCLPFTIEKKGRIQKEYIGND-------------------------SAQLVLHIYNN 871
            +TRG  PFT EK G+I +EY G++                           +  L I+ N
Sbjct: 794  ITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKN 853

Query: 870  ELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLK 691
            EL+ G+IDKAQF  YGLVH V ELYG + AG LLSV SRLFT FLQMHGFTCGVDDLL+ 
Sbjct: 854  ELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIS 913

Query: 690  RSSDMERDRILEKSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRM 511
             + D+ R   L+KSE + E VH +F        DP+KLQ E+EK++  +GE+A   LDRM
Sbjct: 914  PNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRM 973

Query: 510  MSNAMNSLTSEINQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGK 331
            M N +N LTS++N+ L   GL K F  NCLSLMT TGAKG  VN +QISS LGQQ+LEGK
Sbjct: 974  MKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGK 1033

Query: 330  RVPRMVSGKTLPCFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSR 151
            RVPRMVSGKTLPCFPPWD ++R+GGFISDRFLTGL PQEYYFHCMAGR+GLVDTA+KTSR
Sbjct: 1034 RVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSR 1093

Query: 150  SGYLQRCLVKNLECLKVSYDYTVRDADGSVVQFIYGEDGVDVLKSSYISE 1
            SGYLQRCL+KNLECLKV YDYTVRD+DGS+VQF YG+DGVDV ++S+I+E
Sbjct: 1094 SGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITE 1143