BLASTX nr result
ID: Zingiber24_contig00021729
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00021729
(235 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 65 9e-09
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 65 9e-09
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su... 65 9e-09
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su... 65 9e-09
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr... 65 9e-09
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun... 65 9e-09
ref|XP_006412058.1| hypothetical protein EUTSA_v10024193mg [Eutr... 63 5e-08
gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isofo... 63 5e-08
ref|XP_006282990.1| hypothetical protein CARUB_v10003976mg [Caps... 63 5e-08
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 63 5e-08
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 63 5e-08
emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II larg... 63 5e-08
ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Ar... 63 5e-08
ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arab... 63 5e-08
emb|CBI18915.3| unnamed protein product [Vitis vinifera] 63 5e-08
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 63 5e-08
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 63 5e-08
emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana] 63 5e-08
emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana] 63 5e-08
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su... 62 6e-08
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
[Citrus sinensis]
Length = 1790
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Citrus sinensis] gi|568825318|ref|XP_006467028.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1-like
isoform X2 [Citrus sinensis]
Length = 1860
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
gi|557527347|gb|ESR38597.1| hypothetical protein
CICLE_v10024686mg [Citrus clementina]
Length = 1860
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
[Populus trichocarpa] gi|550338614|gb|ERP60834.1|
DNA-directed RNA polymerase II largest subunit family
protein [Populus trichocarpa]
Length = 1837
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_006412058.1| hypothetical protein EUTSA_v10024193mg [Eutrema salsugineum]
gi|557113228|gb|ESQ53511.1| hypothetical protein
EUTSA_v10024193mg [Eutrema salsugineum]
Length = 1837
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFP+SPA+V+KVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSV 33
>gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|508698846|gb|EOX90742.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MD RFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_006282990.1| hypothetical protein CARUB_v10003976mg [Capsella rubella]
gi|482551695|gb|EOA15888.1| hypothetical protein
CARUB_v10003976mg [Capsella rubella]
Length = 1838
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFP+SPA+V+KVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSV 33
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Cucumis sativus]
Length = 1853
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MD RFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MD RFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana] gi|7270532|emb|CAB81489.1|
DNA-directed RNA polymerase (EC 2.7.7.6) II largest
chain [Arabidopsis thaliana]
Length = 1840
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFP+SPA+V+KVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSV 33
>ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|NRPB1_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 1; AltName:
Full=DNA-directed RNA polymerase II subunit RPB1;
Short=DNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase
II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFP+SPA+V+KVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSV 33
>ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata] gi|297312888|gb|EFH43311.1| hypothetical protein
ARALYDRAFT_491060 [Arabidopsis lyrata subsp. lyrata]
Length = 1839
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFP+SPA+V+KVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSV 33
>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MD RFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MD RFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 62.8 bits (151), Expect = 5e-08
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MD RFPYSPA+VAKVR VQFGILSPDEIRQMSV
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSV 33
>emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFP+SPA+V+KVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSV 33
>emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MDTRFP+SPA+V+KVR VQFGILSPDEIRQMSV
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSV 33
>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
tuberosum]
Length = 1839
Score = 62.4 bits (150), Expect = 6e-08
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 100 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSV 2
MD RFP+SPA+VAKVRTVQFGI+SPDEIRQMSV
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSV 33