BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00021474
         (1370 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]       446   e-122
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   445   e-122
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   441   e-121
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...   440   e-121
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   439   e-120
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   437   e-120
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   425   e-116
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S...   424   e-116
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   424   e-116
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   420   e-115
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   420   e-115
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme...   420   e-115
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   418   e-114
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    418   e-114
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   418   e-114
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps...   415   e-113
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   415   e-113
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...   415   e-113
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     413   e-112
ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutr...   412   e-112

>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score =  446 bits (1147), Expect = e-122
 Identities = 216/393 (54%), Positives = 292/393 (74%), Gaps = 3/393 (0%)
 Frame = -1

Query: 1172 QDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGA 993
            + +  V+QV  GGF  +V AK L ++ ++EVG++WRCR+K+SWTPP+S+P + +      
Sbjct: 7    EKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVI 66

Query: 992  SWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVNRRR-T 816
               +DY++V PHAFVHFA P T   A+DAAGR  LV N ++L+V++G E+   +NRRR  
Sbjct: 67   QRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRN 126

Query: 815  SDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTR 636
            + PFK S+V ++IG  VSRD+F V W+GP   VDFL+DPFDG CK  FS+DTAFSFKGT 
Sbjct: 127  TTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTT 186

Query: 635  DLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLL 456
            + A+IKC+FK+EFLVRDINE++ Y + +  V+  QL S+P V+YRTADD+I ESVP++LL
Sbjct: 187  EYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLL 246

Query: 455  DDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRI--DDVRPKHRQI 282
            DD+D WIRTTDFTPS A+GRCN+YR++  PR G K++++L YLR++R+  D VR   R  
Sbjct: 247  DDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLR-- 304

Query: 281  IRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDI 102
            I DEP++G    DPF+CI YKEGI F  MFLVNA++HKGI NQHQL+E+FF+LLR Q   
Sbjct: 305  ISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPRE 364

Query: 101  INESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +N +AL  I+SY+R  FDA +RLK V D LL++
Sbjct: 365  VNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRN 397


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  445 bits (1144), Expect = e-122
 Identities = 219/398 (55%), Positives = 288/398 (72%), Gaps = 4/398 (1%)
 Frame = -1

Query: 1184 THKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPV 1005
            T + +    V+QV FGGFD +VTA+ L  +L++E+G +WRCR+K+SWTPP+S+P + +  
Sbjct: 3    TKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITD 62

Query: 1004 GGGASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN- 828
                   + Y RV PHAFVHFA P++   A +AAG   L  NGR ++V++G E+   +N 
Sbjct: 63   TAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQ 122

Query: 827  RRRTSDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSF 648
            RRRT+ PFK S+V VEIG  VSRD+FLV W+GP   VDFL+DPFDG+CK  F++DTAFSF
Sbjct: 123  RRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSF 182

Query: 647  KGTRDLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVP 468
            KGT + A+I+C+FKLEFLVRDINE++ Y D +  V+  QL SAPSV+YRTADDDI   VP
Sbjct: 183  KGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVP 242

Query: 467  YNLLDDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDD---VRP 297
            ++LLDD+DPWIRTTDFTPS A+GRCNSYR+   PR G K++R+L +LR+RR+ +    RP
Sbjct: 243  FDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRP 302

Query: 296  KHRQIIRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLR 117
             H   +  EP Y +   DPFFCI ++EG+ F+ MFLVNA++HKGI NQHQL++ FF LLR
Sbjct: 303  LH---VTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLR 359

Query: 116  QQSDIINESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
             Q   +N +AL  I SYK   FDA +RLK VQ  LLK+
Sbjct: 360  NQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKN 397


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  441 bits (1134), Expect = e-121
 Identities = 217/393 (55%), Positives = 291/393 (74%), Gaps = 3/393 (0%)
 Frame = -1

Query: 1172 QDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGA 993
            + ++ V+Q+  GGFD  VTA +L  +LED +G + RCR+K+S TPP+S+P + +      
Sbjct: 7    EKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKI 66

Query: 992  SWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRT 816
               EDY++V PHAFVHF  PE    A+DAAG++ L L+G+ L+V++G E+   +N RRRT
Sbjct: 67   ERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRT 126

Query: 815  SDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTR 636
            + PFKF +VR+EIG  VSRD++   W+GP   VDFL+DPFDG CK LF+KDTAFSFKG  
Sbjct: 127  TFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMP 186

Query: 635  DLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLL 456
              A+IKCNFK+EFLVR+INEVR  +D +  ++  QL S+P VYYRTADDDI E+VP++LL
Sbjct: 187  KHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLL 246

Query: 455  DDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRID--DVRPKHRQI 282
            DD+DPWIRTTDFT S A+GRCNSYRI   PR+G K+++++ YLR RR++  +  PK +  
Sbjct: 247  DDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLR 306

Query: 281  IRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDI 102
            +RDEP++G+   DPFFCIQ+KEGI F  MFLVNA++HKGI+NQHQL+++FF LLR Q   
Sbjct: 307  VRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKD 366

Query: 101  INESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            IN +AL  I SY+   FDA +RLK+V   LLK+
Sbjct: 367  INIAALKHICSYRHPVFDAYQRLKLVHKWLLKN 399


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  440 bits (1131), Expect = e-121
 Identities = 214/391 (54%), Positives = 284/391 (72%), Gaps = 1/391 (0%)
 Frame = -1

Query: 1172 QDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGA 993
            ++   V+QV FGGF  +  AK L  +LEDE+G+++RCR+K+SWTPP+SFP + +      
Sbjct: 7    ENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEINTAD-V 65

Query: 992  SWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVNRRR-T 816
               +DY RV PHAFVHF  P++   AMDAAGR  L  N   L+V++G E+   +NRRR T
Sbjct: 66   KRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRT 125

Query: 815  SDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTR 636
              PFK S+V VEIG+ V +D+F  +W+GP   VDF++DPFDG CK  F+ DTAFSFKGT+
Sbjct: 126  KTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTK 185

Query: 635  DLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLL 456
              A+IKC+FK+EFLVR+I E++ Y D +  V+  +L S+P V YRTADDDI +SVP++LL
Sbjct: 186  KHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLL 245

Query: 455  DDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIR 276
            DD+DPWIRTTDFTPS A+GRCNSYR+L  PR G K+++++ YLR+RR+ +V  K    I+
Sbjct: 246  DDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQ 305

Query: 275  DEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDIIN 96
            DEP++G+   +PFF IQY+EGI F  MFLVNA++HKG VNQHQL++ FF LLR Q   IN
Sbjct: 306  DEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEIN 365

Query: 95   ESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
             +AL  + SY+   FDA  RLKVVQD LLK+
Sbjct: 366  VAALKHLCSYRSPVFDACERLKVVQDWLLKN 396


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  439 bits (1129), Expect = e-120
 Identities = 210/386 (54%), Positives = 284/386 (73%), Gaps = 1/386 (0%)
 Frame = -1

Query: 1157 VSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGASWKED 978
            V+QV  GGFD +VTAK L ++LE E+G++WRCR+K+SWTPP+S+P + +      +  ED
Sbjct: 12   VTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTED 71

Query: 977  YERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDPFK 801
            Y RV PHAFVHFA P++   A+DAA R  L LN + L+ ++G E+   +N RRR + PFK
Sbjct: 72   YRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFK 131

Query: 800  FSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTRDLALI 621
             S V VEIG  VSRD+F V W+GP   VDFL+DPFDG C+  FS++TAFSFK T + A+I
Sbjct: 132  LSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVI 191

Query: 620  KCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLLDDEDP 441
            KC+FK+EFLVRDINE++ Y + +  V+  QL SAP V+YRTADDDI  SVP++LLDD+DP
Sbjct: 192  KCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDP 251

Query: 440  WIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIRDEPNY 261
            WIRTTDFT S A+GRC+SYR+   PR G K+++++ +L++RR+ +   +    IRDEP++
Sbjct: 252  WIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDEPDF 311

Query: 260  GVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDIINESALL 81
            G+   DPFFCI +KEGI F  +FLVNA++HKGI NQHQL+ +FF LLR Q   +N +AL 
Sbjct: 312  GMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALK 371

Query: 80   DIWSYKRSSFDAPRRLKVVQDCLLKD 3
             I+ Y+R  FDA ++LKV Q+ LLK+
Sbjct: 372  HIYPYRRPVFDAYKKLKVAQEWLLKN 397


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  437 bits (1123), Expect = e-120
 Identities = 214/389 (55%), Positives = 288/389 (74%), Gaps = 4/389 (1%)
 Frame = -1

Query: 1157 VSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGASWKED 978
            V+QV  GGFD +VTAK L ++L+  +G++WRCR+K+SWTPP+S+P + +         ED
Sbjct: 12   VTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIERTED 71

Query: 977  YERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSDPFK 801
            Y RVVPHAFVHFA P++   AM+A+GR  L LN + L+V++G ++   +N RRRT+ PFK
Sbjct: 72   YRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTTPFK 131

Query: 800  FSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTRDLALI 621
             S+V  EIGN VSRD+F V W+GP   VDFL+DPFDG CK  FS++TAFS K T + A+I
Sbjct: 132  LSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVI 191

Query: 620  KCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLLDDEDP 441
            KC+FK+EFLVRDINE+  Y + +  V+  QL SAP V+YRTADDDI   VP++LLDD+DP
Sbjct: 192  KCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDP 251

Query: 440  WIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPK-HRQIIR--DE 270
            WIRTTDFT S A+GRC+SYR+   PR G K+++++ YL++RR+  ++ + HR+ IR  DE
Sbjct: 252  WIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRILDE 311

Query: 269  PNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDIINES 90
            P++G+   DPFFCI +KEGI F  +FLVNA++HKGI NQHQL+ +FF LLR Q   +N S
Sbjct: 312  PDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVS 371

Query: 89   ALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            AL  I +Y+R  F+A RRLK VQ+ LLK+
Sbjct: 372  ALKHICTYRRPVFNAYRRLKAVQEWLLKN 400


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score =  425 bits (1092), Expect = e-116
 Identities = 196/393 (49%), Positives = 283/393 (72%), Gaps = 1/393 (0%)
 Frame = -1

Query: 1178 KEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGG 999
            +E + + V+QV FGGFD++V A+ L  +LE E+G++ RCR+K+SWTPP+S+P + V    
Sbjct: 4    EEGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVA 63

Query: 998  GASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RR 822
                 +DY++VVPHAFVHF  P++  +A+ AAGR  L+ N ++L+ ++G ES   +N RR
Sbjct: 64   NVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRR 123

Query: 821  RTSDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKG 642
            RT  PFK S+V+V+IGN    D F VAW+GP   +DFL+DPFDG CK  F+KDTAFSFK 
Sbjct: 124  RTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKD 183

Query: 641  TRDLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYN 462
                  +KC++K+EF+VRDIN++  Y D + +V+  QL S+P ++YRTADDDI + VPY+
Sbjct: 184  NNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAKLVPYD 243

Query: 461  LLDDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQI 282
            LLDD+DPWIRTTDFT S A+GRCN++R+   PR+G+K+  ++ YL+++R+  V       
Sbjct: 244  LLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPK 303

Query: 281  IRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDI 102
            I +EP+YGV   D FFCI YK+ I F  +FLVNA++HKGI+NQHQ+++ FF LLR Q + 
Sbjct: 304  ILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNE 363

Query: 101  INESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +N +AL  I +++R   DA ++LK+VQ+ LLK+
Sbjct: 364  VNLAALSHIHAFRRPVLDACKKLKLVQEWLLKN 396


>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
            gi|241929916|gb|EES03061.1| hypothetical protein
            SORBIDRAFT_03g022880 [Sorghum bicolor]
          Length = 1207

 Score =  424 bits (1090), Expect = e-116
 Identities = 209/406 (51%), Positives = 283/406 (69%), Gaps = 7/406 (1%)
 Frame = -1

Query: 1214 GILDAMDLPPTHKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPP 1035
            G L     P       +L  +QV  GGFDA V A  LADFLE + G++WRCRVK+SWTPP
Sbjct: 2    GSLRGAAAPSPAPRAGDLVTTQVSLGGFDATVKALDLADFLELKAGLVWRCRVKTSWTPP 61

Query: 1034 DSFPVYHVP-VGGGASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVN 858
            D++P + +P V   A+    Y+RV PHAFVHFARPE  + A DAAGR+ L+L+G+ LR  
Sbjct: 62   DAYPDFLLPTVTSAAAQPPQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAA 121

Query: 857  MGTESSLLVNRRRTSDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKI 678
               ESSL  +RRR+  PF+F   R+E+G+  ++D FL AW+GP   ++F +DPFDG C++
Sbjct: 122  SAQESSLRASRRRSVSPFRFPGSRLEVGDLPAKDAFLAAWRGPASGLEFSVDPFDGSCRL 181

Query: 677  LFSKDTAFSFKGTRDLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRT 498
            +F++DTAF  +  R+  +++C+ KLEF VRD+ EVRV++ +   ++  +L +AP VYYRT
Sbjct: 182  IFARDTAFKVREFRESVVMRCDVKLEFPVRDVAEVRVFRLDCSLLI--RLSAAPLVYYRT 239

Query: 497  ADDDIYESVPYNLLDDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDR 318
            ADDDI+ESVP++LLDD+DPWIRTTD TPS A+GRC +YRI FSPRF  KM+R+LAY+RDR
Sbjct: 240  ADDDIHESVPFDLLDDDDPWIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALAYMRDR 299

Query: 317  RIDDV------RPKHRQIIRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVN 156
            R+  V        +    +RDEP +G    D FFC+Q+ EG+KF  +FLVNALVHKG++N
Sbjct: 300  RVPIVDCGGGWGARRGLTVRDEPEFGERMQDLFFCVQHSEGLKFPVLFLVNALVHKGVIN 359

Query: 155  QHQLTEEFFSLLRQQSDIINESALLDIWSYKRSSFDAPRRLKVVQD 18
            QH LT EFF LL+++ D +N +AL + W  K   FDA  RLK +QD
Sbjct: 360  QHHLTPEFFGLLQRKEDDVNVAALREFWGDKFPVFDACGRLKNLQD 405


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score =  424 bits (1089), Expect = e-116
 Identities = 195/393 (49%), Positives = 283/393 (72%), Gaps = 1/393 (0%)
 Frame = -1

Query: 1178 KEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGG 999
            +E + + V+QV FGGFD++V A+ L  +LE E+G++ RCR+K+SWTPP+S+P + V    
Sbjct: 4    EEGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVA 63

Query: 998  GASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RR 822
                 +DY++VVPHAFVHF  P++  +A+ AAGR  L+ N ++L+ ++G ES   +N RR
Sbjct: 64   NVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRR 123

Query: 821  RTSDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKG 642
            RT  PFK S+V+V+IGN    D F VAW+GP   +DFL+DPFDG CK  F+KDTAFSFK 
Sbjct: 124  RTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKD 183

Query: 641  TRDLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYN 462
                  +KC++K+EF+VRDIN++  Y D + +V+  QL ++P ++YRTADDDI + VPY+
Sbjct: 184  NNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKLVPYD 243

Query: 461  LLDDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQI 282
            LLDD+DPWIRTTDFT S A+GRCN++R+   PR+G+K+  ++ YL+++R+  V       
Sbjct: 244  LLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPK 303

Query: 281  IRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDI 102
            I +EP+YGV   D FFCI YK+ I F  +FLVNA++HKGI+NQHQ+++ FF LLR Q + 
Sbjct: 304  ILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNE 363

Query: 101  INESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +N +AL  I +++R   DA ++LK+VQ+ LLK+
Sbjct: 364  VNLAALSHIHAFRRPVLDACKKLKLVQEWLLKN 396


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
            sinensis]
          Length = 1025

 Score =  420 bits (1080), Expect = e-115
 Identities = 211/388 (54%), Positives = 275/388 (70%), Gaps = 1/388 (0%)
 Frame = -1

Query: 1163 LTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGASWK 984
            L  +QV FGGFD NV A +L  +LE+EVG +WRCR+K+S TP +S+P + V         
Sbjct: 10   LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKT 69

Query: 983  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVNRR-RTSDP 807
            +DYE+V PHAFVHFA P    +A+DAAGR  L LNG+ L+V++G E+   +N+R RTS P
Sbjct: 70   DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 806  FKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTRDLA 627
            FK  +V VEIG  VSRD+F VAW+GP    DFL+DPFDG CK  F++D AF+ K + + A
Sbjct: 130  FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189

Query: 626  LIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLLDDE 447
            +IKC FK+EFLVR+IN V+ Y + +   +  QL S+P V+YRTADDDI   VP+++LDD+
Sbjct: 190  VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDD 249

Query: 446  DPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIRDEP 267
            DPWIRTTDFTPS A+GRCNSYRI  S R   K+ + + YL +RR+          IR+EP
Sbjct: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309

Query: 266  NYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDIINESA 87
            ++ V   DPFFCI Y+EGI F  MFLVNA++HKGI+NQHQL++ FF LLR QS  +N +A
Sbjct: 310  DFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAA 369

Query: 86   LLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            L  I+SYK   FDA +RLK+VQ+ LLKD
Sbjct: 370  LKHIYSYKWPVFDACKRLKLVQEWLLKD 397


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  420 bits (1080), Expect = e-115
 Identities = 211/388 (54%), Positives = 275/388 (70%), Gaps = 1/388 (0%)
 Frame = -1

Query: 1163 LTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGASWK 984
            L  +QV FGGFD NV A +L  +LE+EVG +WRCR+K+S TP +S+P + V         
Sbjct: 10   LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKT 69

Query: 983  EDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVNRR-RTSDP 807
            +DYE+V PHAFVHFA P    +A+DAAGR  L LNG+ L+V++G E+   +N+R RTS P
Sbjct: 70   DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 806  FKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTRDLA 627
            FK  +V VEIG  VSRD+F VAW+GP    DFL+DPFDG CK  F++D AF+ K + + A
Sbjct: 130  FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189

Query: 626  LIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLLDDE 447
            +IKC FK+EFLVR+IN V+ Y + +   +  QL S+P V+YRTADDDI   VP+++LDD+
Sbjct: 190  VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDD 249

Query: 446  DPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIRDEP 267
            DPWIRTTDFTPS A+GRCNSYRI  S R   K+ + + YL +RR+          IR+EP
Sbjct: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309

Query: 266  NYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDIINESA 87
            ++ V   DPFFCI Y+EGI F  MFLVNA++HKGI+NQHQL++ FF LLR QS  +N +A
Sbjct: 310  DFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAA 369

Query: 86   LLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            L  I+SYK   FDA +RLK+VQ+ LLKD
Sbjct: 370  LKHIYSYKWPVFDACKRLKLVQEWLLKD 397


>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
            italica]
          Length = 1211

 Score =  420 bits (1080), Expect = e-115
 Identities = 205/410 (50%), Positives = 282/410 (68%), Gaps = 11/410 (2%)
 Frame = -1

Query: 1214 GILDAMDLPPTHKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPP 1035
            G L     PP      +L ++QV  GGFDA VTA+ LADFLE EVG +WRCRVK+SWTPP
Sbjct: 2    GSLRGAAAPPPAPRAGDLVITQVSLGGFDATVTARDLADFLESEVGQVWRCRVKTSWTPP 61

Query: 1034 DSFPVYHVPV----GGGASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVL 867
            D++P + +P      G A     Y+RV PHAFVHFARPE  ++A DAAGR+ L+L  + L
Sbjct: 62   DAYPDFLLPAVTPAAGAAGQPPQYDRVPPHAFVHFARPEAARRAADAAGRSELILGRKPL 121

Query: 866  RVNMGTESSLLVNRRRTSDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGR 687
            R     +SS+  +RRR   PF+F++ R+E+G+  + D F  AW+GPD  ++F +DPFDG 
Sbjct: 122  RAASAPDSSIRASRRRNVKPFRFTDSRLEVGDLPAPDSFFAAWRGPDAGLEFSVDPFDGT 181

Query: 686  CKILFSKDTAFSFKGTRDLALI-KCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSV 510
            C+ +F++DTAF+++  R  A++ +C+ KLEF VRD+ EVR +Q ++  ++  +L S P V
Sbjct: 182  CRFVFTRDTAFAYQEYRQAAVVMRCDIKLEFPVRDVAEVRTFQLDSSLLL--RLSSTPLV 239

Query: 509  YYRTADDDIYESVPYNLLDDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAY 330
            +YRTADDDI+ESVP++LLDD+DPWIRTTD TPS A+GRC  YR+ F  RF  KM+ +LAY
Sbjct: 240  FYRTADDDIHESVPFDLLDDDDPWIRTTDITPSGAIGRCGVYRVTFPRRFWPKMEHALAY 299

Query: 329  LRDRRIDDVR------PKHRQIIRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHK 168
            +R+RR++ V        +    +RDEP +G    D FFC+Q+ EG+KF  +FLVNALVHK
Sbjct: 300  MRERRVEIVECGGGWGSRRGLSVRDEPEFGERMQDLFFCMQHAEGLKFPVLFLVNALVHK 359

Query: 167  GIVNQHQLTEEFFSLLRQQSDIINESALLDIWSYKRSSFDAPRRLKVVQD 18
            G++ QH LT EFF LL+++ D +N +AL + W  K   FDA RRLK +QD
Sbjct: 360  GVITQHHLTPEFFGLLQRREDEVNVAALREFWGDKFPVFDACRRLKNLQD 409


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score =  418 bits (1075), Expect = e-114
 Identities = 212/402 (52%), Positives = 290/402 (72%), Gaps = 3/402 (0%)
 Frame = -1

Query: 1199 MDLPPTHKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPV 1020
            M+L  + KE     V+QV  GGFD +V A+ L  +LE+EVG++WRCR+K+SWTPP+S+P 
Sbjct: 1    MELEGSVKET---VVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPN 57

Query: 1019 YHVPVGGGASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESS 840
            + +        K++Y++V PHAFVHFA P+    A+DAAGR  L  N ++L+V++G E+ 
Sbjct: 58   FEITDTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENP 117

Query: 839  LLVNRRRT-SDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKD 663
              +NRRR  + PFK  +V +EIG   S D+F+V W+GP   V+FL+DPFD  CK  FS+D
Sbjct: 118  YYLNRRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRD 177

Query: 662  TAFSFKGTRDLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDI 483
            TAFSFKGT + A+IKC+FK+EFLVR+INEV+ Y +   FV+  QL S+P V+YRTADDD 
Sbjct: 178  TAFSFKGTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDF 237

Query: 482  YESVPYNLLDDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRR--ID 309
             ++VP+ LLDD+D WIRTTDFT S A+GRCN+YR+L  PR G+K+++++ YLR+RR  ++
Sbjct: 238  EKTVPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVE 297

Query: 308  DVRPKHRQIIRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFF 129
            D+R + R  IRDEP++G    D F+ I YKEGI F  MFLVNA++HKGI NQHQL+ +FF
Sbjct: 298  DLRSQLR--IRDEPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFF 354

Query: 128  SLLRQQSDIINESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
             LLR QS  +N +AL  I+SY+   +DA  RLK V D LLK+
Sbjct: 355  RLLRNQSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKN 396


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  418 bits (1075), Expect = e-114
 Identities = 214/393 (54%), Positives = 285/393 (72%), Gaps = 3/393 (0%)
 Frame = -1

Query: 1172 QDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGA 993
            + +L V+Q+  GGFD +V AK L+++LE++VG +WRCR+K S TPPDS+P Y +      
Sbjct: 7    EKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDIDAERVH 66

Query: 992  SWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRT 816
              K DYE+VVPHAFVHFA  E+ K A+ AAG N L+L  + L V++G E+   +N RRRT
Sbjct: 67   RMK-DYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRT 125

Query: 815  SDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTR 636
            + PFKFS+V VE+G  VS+DDF+V W+GP   VDFL+DPF+G CKILF+KDTAFSF+G  
Sbjct: 126  TMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEA 185

Query: 635  DLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLL 456
              A+IKCNFK+EFLVR+INE++  +D    V+ FQL S+P V+YRTADDDI ESV ++LL
Sbjct: 186  RHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLL 245

Query: 455  DDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIR 276
            DD+D WIRTTD T S A+GRCN+YRI   PR G   ++++AY   RR+  V   +R+++R
Sbjct: 246  DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLR 305

Query: 275  --DEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDI 102
              DEP++GV   DPFFC Q  EGI F  MFLVNA++HKGIVNQHQ+T EFF LLR + + 
Sbjct: 306  VKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEE 364

Query: 101  INESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +N +AL  ++SYK    DA ++L  +Q  LLK+
Sbjct: 365  VNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKN 397


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  418 bits (1074), Expect = e-114
 Identities = 201/393 (51%), Positives = 279/393 (70%), Gaps = 1/393 (0%)
 Frame = -1

Query: 1178 KEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGG 999
            + +++  V+QV FGGF ++VTAK+L  +LEDE+G+++RCR+K+SWTPP+S P + +    
Sbjct: 5    ERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAA 64

Query: 998  GASWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RR 822
                 +DY +V PHAFVHFA PE+    MDA GR  L  N + L+ ++G E+   +N RR
Sbjct: 65   DIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRR 124

Query: 821  RTSDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKG 642
            RT  PFK ++VR+EIG+ V  D+F VAWKGPD  VDF++DPFDG CK  F +DTAFSFKG
Sbjct: 125  RTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKG 184

Query: 641  TRDLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYN 462
                A+I C+FK EF VR+I E + Y +    V+  +L+S+P V YRTADDDI +SV ++
Sbjct: 185  LNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFD 244

Query: 461  LLDDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQI 282
            LLDD+DPWIRTTDFTP+ A+GRCN YR+L  PR G K+++++ YL++RR+ ++  K    
Sbjct: 245  LLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPR 304

Query: 281  IRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDI 102
            I+DEP +G    D  F I Y++ I F  +FLVNA++HKGI+NQHQL+E FF LLR Q + 
Sbjct: 305  IQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEE 364

Query: 101  INESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            IN +AL  + SYK   FDA +RLK+VQ+ LL++
Sbjct: 365  INVAALKHLCSYKHPVFDASKRLKLVQEWLLRN 397


>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
            gi|482559225|gb|EOA23416.1| hypothetical protein
            CARUB_v10016597mg [Capsella rubella]
          Length = 1197

 Score =  415 bits (1067), Expect = e-113
 Identities = 205/389 (52%), Positives = 278/389 (71%), Gaps = 1/389 (0%)
 Frame = -1

Query: 1166 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGASW 987
            N  V+QV  GGF  + TAKQL D+LEDEVG++WRCR+K+SWTPP S+P + +        
Sbjct: 9    NSVVTQVSIGGFGESTTAKQLTDYLEDEVGLVWRCRLKNSWTPPGSYPNFEIADTSNIPR 68

Query: 986  KEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSD 810
             +DY++V PHAFVHFA  E+   AMDAAG+  L+L+G+ L+V++G ++   +N RRRT+ 
Sbjct: 69   IDDYKKVEPHAFVHFALSESTNHAMDAAGQCKLILDGQPLKVSLGPKNPYTLNQRRRTTT 128

Query: 809  PFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTRDL 630
            P+K + V +EIG  VSRD+FLV+W+     V+FL+DPFD  CK  FSK TAF+FK     
Sbjct: 129  PYKMTGVSLEIGTLVSRDEFLVSWRADG--VNFLVDPFDNTCKFCFSKSTAFAFKDAVMH 186

Query: 629  ALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLLDD 450
            A+IKC++KLE LVRDI   R Y+++  FV+  QL S+P V+YRTADDDIYE+VP++LLDD
Sbjct: 187  AVIKCDYKLESLVRDIQTFRQYRNSHGFVLLLQLASSPRVWYRTADDDIYETVPFDLLDD 246

Query: 449  EDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIRDE 270
            +DPWIRTTDFT   A+GRC SYR+L SPR+  K+  +L YLR RR+ + R +    IRDE
Sbjct: 247  DDPWIRTTDFTQVGAIGRCLSYRVLISPRYDKKLTTALDYLRMRRVQEERVRWPPRIRDE 306

Query: 269  PNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDIINES 90
            P +G    D FFCI ++EGI F  MFLVN+++H+G+ NQ QLTE FF LLR Q   +N +
Sbjct: 307  PCFGEPVSDHFFCIHHREGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNVA 366

Query: 89   ALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +L  + +YKR  FDA +RLK+V + +LK+
Sbjct: 367  SLKHLCTYKRPVFDAYKRLKLVHEWILKN 395


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  415 bits (1067), Expect = e-113
 Identities = 211/393 (53%), Positives = 282/393 (71%), Gaps = 3/393 (0%)
 Frame = -1

Query: 1172 QDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGA 993
            + +L V+Q+  GGFD +V AK L+++LE++VG +WRCR+K S TPPDS+P Y V      
Sbjct: 7    EKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDVDAARVH 66

Query: 992  SWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRT 816
              K DYE+VVPHAFVHFA  E+ K A+ AAG N L+L  + L V++G E+   +N RRRT
Sbjct: 67   RMK-DYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLNQRRRT 125

Query: 815  SDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTR 636
            + PFKFS+V VE+G  VS+DDF+V W+GP   VDF +DPF+G CKILF+KDTAFSF+G  
Sbjct: 126  TMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFSFRGEA 185

Query: 635  DLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLL 456
              A+IKCNFK+EF+VR+INE++ ++D    V+  QL S+P V+YRTADDDI ESV ++LL
Sbjct: 186  KHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLL 245

Query: 455  DDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQI-- 282
            DD+D WIRTTD T S A+GRCN+YRI   PR G   ++++AY    R+  V   +R++  
Sbjct: 246  DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLR 305

Query: 281  IRDEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDI 102
            +RDEP++GV   DPFFC Q  EGI F  MFLVNA++HKGIVNQHQ+T EFF LLR   + 
Sbjct: 306  VRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEE 364

Query: 101  INESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +N +AL  ++SYK    DA ++L  +Q  LLK+
Sbjct: 365  VNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKN 397


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
            gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
            6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score =  415 bits (1067), Expect = e-113
 Identities = 202/389 (51%), Positives = 280/389 (71%), Gaps = 1/389 (0%)
 Frame = -1

Query: 1166 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGASW 987
            N  V+QV  GGF  + TAKQL D+LEDE+G++WRCR+K+SWTPP S+P + +        
Sbjct: 9    NSVVTQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEIADTSSIPK 68

Query: 986  KEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSD 810
             +DY++V PHAFVHFA PE+  +AMDAAG+  L+L+G+ L+V++G ++   +N RRRT+ 
Sbjct: 69   FDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTLNQRRRTTT 128

Query: 809  PFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTRDL 630
            P+K + + +EIG  VSRD+FLV+W+     VDFL+DPFD  CK  F K TAFSFK     
Sbjct: 129  PYKLAGISLEIGTLVSRDEFLVSWRADG--VDFLVDPFDNTCKFCFRKSTAFSFKDAVMH 186

Query: 629  ALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLLDD 450
            A+I C++KLE LVRDI  VR Y+++  +V+  QL S+P V+YRTADDDI++++P +LLDD
Sbjct: 187  AVINCDYKLELLVRDIQTVRQYKNSHGYVLILQLASSPRVWYRTADDDIHDTIPVDLLDD 246

Query: 449  EDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIRDE 270
            +DPWIRTTDFT   A+GRC+SYR+L SPR+  K+  +L YLR RR+ + R +    IR+E
Sbjct: 247  DDPWIRTTDFTQVGAIGRCHSYRVLISPRYEKKLTTALEYLRMRRVQEERVRWPPRIRNE 306

Query: 269  PNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDIINES 90
            P +G    D FFCI +KEGI F  MFLVN+++H+G+ NQ QLTE FF LLR Q   +N +
Sbjct: 307  PCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIA 366

Query: 89   ALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +L  + +YKR  FDA +RLK+VQ+ +LK+
Sbjct: 367  SLKHLCTYKRPVFDAYKRLKLVQEWILKN 395


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  413 bits (1061), Expect = e-112
 Identities = 210/393 (53%), Positives = 281/393 (71%), Gaps = 3/393 (0%)
 Frame = -1

Query: 1172 QDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGA 993
            +  L V+Q+  GGFD +V AK L+++LE++VG +WRCR+K S TPPDS+P Y +      
Sbjct: 7    EKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDIDAEK-V 65

Query: 992  SWKEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRT 816
                +YE+VVPHAFVHFA  E+ K A+ AAG N L+L  + L V++G E+   +N RRRT
Sbjct: 66   QRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRT 125

Query: 815  SDPFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTR 636
            + PFKFS+V VE+G  VS+DDF+V W+GP   VDFL+DPF+G CKILF+KDTAFSF+G  
Sbjct: 126  TMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEA 185

Query: 635  DLALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLL 456
              A+IKCNFK+EFLVR+INE++  +D    V+ FQL S+P V+YRTADDDI ESV ++LL
Sbjct: 186  RHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLL 245

Query: 455  DDEDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIR 276
            DD+D WIRTTD T S A+GRCN+YRI   PR G   ++++AY   RR+  V   +R+++R
Sbjct: 246  DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLR 305

Query: 275  --DEPNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDI 102
              DEP++GV   DPFFC Q  EGI F  +FLVNA++HKGIVNQHQ+  EFF LLR   + 
Sbjct: 306  VKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEE 364

Query: 101  INESALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +N +AL  ++SYK    DA ++L  +Q  LLK+
Sbjct: 365  VNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKN 397


>ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum]
            gi|557105252|gb|ESQ45586.1| hypothetical protein
            EUTSA_v10010107mg [Eutrema salsugineum]
          Length = 927

 Score =  412 bits (1060), Expect = e-112
 Identities = 206/389 (52%), Positives = 273/389 (70%), Gaps = 1/389 (0%)
 Frame = -1

Query: 1166 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGGASW 987
            N  V+QV  GGF  + TAK+L D+LE EVG IWRCR+K+SWTPP S+P + +        
Sbjct: 25   NSVVTQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEIADTSNIRN 84

Query: 986  KEDYERVVPHAFVHFARPETGKKAMDAAGRNALVLNGRVLRVNMGTESSLLVN-RRRTSD 810
              DY+RV PHAFVHF  PE+   AMDAAG+  L+L+G+ L+V++G E+   +N RRRT+ 
Sbjct: 85   FNDYKRVEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSLGPENPYTLNQRRRTTT 144

Query: 809  PFKFSNVRVEIGNQVSRDDFLVAWKGPDLVVDFLIDPFDGRCKILFSKDTAFSFKGTRDL 630
            P K S + VEIG  VSRD+FLV+W+     VDFL+DPFD  C+  F+K TAFS K T   
Sbjct: 145  PLKLSGISVEIGTLVSRDEFLVSWRAEK--VDFLVDPFDNTCRFCFTKSTAFSLKDTMRH 202

Query: 629  ALIKCNFKLEFLVRDINEVRVYQDNAPFVMQFQLISAPSVYYRTADDDIYESVPYNLLDD 450
            A+I C++KLE LVRDI  VR Y+ +  FV+  QL S+P V+YRTADDDIYE+ P +LLDD
Sbjct: 203  AVINCDYKLELLVRDIRTVRQYRASDGFVLLLQLASSPRVWYRTADDDIYETCPVDLLDD 262

Query: 449  EDPWIRTTDFTPSNAVGRCNSYRILFSPRFGVKMQRSLAYLRDRRIDDVRPKHRQIIRDE 270
            +DPWIRTTDFT + A+GRC SYR+L SPR+  K+  +L YLR +R+ + R +    IRDE
Sbjct: 263  DDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDYLRRQRVKEERVRWPPRIRDE 322

Query: 269  PNYGVLPVDPFFCIQYKEGIKFSTMFLVNALVHKGIVNQHQLTEEFFSLLRQQSDIINES 90
            P +G    D FFCI +KEGI F  MFLVN+++H+G++NQ QLTE FF LLR Q   +N +
Sbjct: 323  PGFGEAVSDHFFCIHHKEGISFEIMFLVNSVLHRGVLNQFQLTERFFDLLRNQPKDVNIA 382

Query: 89   ALLDIWSYKRSSFDAPRRLKVVQDCLLKD 3
            +L  + +Y R  FDA +RLK+VQ+ +LK+
Sbjct: 383  SLKHLCTYNRPVFDAYKRLKLVQEWVLKN 411