BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00021188
         (512 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A...   233   2e-59
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   226   3e-57
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps...   225   4e-57
ref|XP_004956290.1| PREDICTED: DNA-directed RNA polymerase II su...   225   5e-57
ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group] g...   225   5e-57
tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea m...   225   5e-57
ref|NP_001149261.1| LOC100282883 [Zea mays] gi|195625852|gb|ACG3...   225   5e-57
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not...   224   7e-57
ref|XP_006660419.1| PREDICTED: DNA-directed RNA polymerases II, ...   224   7e-57
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   224   7e-57
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   224   9e-57
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   224   9e-57
ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II su...   223   2e-56
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   223   3e-56
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   223   3e-56
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   223   3e-56
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   223   3e-56
gb|AAM65319.1| DNA-directed RNA polymerase II, third largest sub...   223   3e-56
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   222   3e-56
ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutr...   221   8e-56

>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
           gi|548856809|gb|ERN14637.1| hypothetical protein
           AMTR_s00038p00194050 [Amborella trichopoda]
          Length = 324

 Score =  233 bits (594), Expect = 2e-59
 Identities = 113/134 (84%), Positives = 127/134 (94%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SYQRFPKV+IREMKDDYLKFELR+TD S+ANALRR+M+AEVPT+AIDLVEIE+NSSVLND
Sbjct: 5   SYQRFPKVKIREMKDDYLKFELRETDPSMANALRRIMLAEVPTIAIDLVEIEANSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EFLAHRLGLIPLTS+ AM+MRFSRDCDACDGDGQCE+CSVEF LSV+CDSDQT+DVTSAD
Sbjct: 65  EFLAHRLGLIPLTSEKAMSMRFSRDCDACDGDGQCEYCSVEFQLSVKCDSDQTLDVTSAD 124

Query: 64  LQSTNPRVCPVDVA 23
           L S++  V PVDVA
Sbjct: 125 LVSSDIHVIPVDVA 138


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
           thaliana] gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           3; AltName: Full=DNA-directed RNA polymerase II 36 kDa
           polypeptide A; AltName: Full=DNA-directed RNA polymerase
           II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
           Short=RNA polymerase II subunit B3-A
           gi|514318|gb|AAB03741.1| RNA polymerase II third largest
           subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
           DNA-directed RNA polymerase II, third largest subunit
           [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
           putative DNA-directed RNA polymerase II third largest
           subunit [Arabidopsis thaliana]
           gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
           polymerase II [Arabidopsis thaliana]
           gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
           II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  226 bits (575), Expect = 3e-57
 Identities = 110/140 (78%), Positives = 126/140 (90%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           +YQRFPK++IRE+KDDY KFELR+TDVS+ANALRRVMI+EVPTVAIDLVEIE NSSVLND
Sbjct: 5   TYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTS+ AM+MRFSRDCDACDGDGQCEFCSVEF LS +C +DQT+DVTS D
Sbjct: 65  EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124

Query: 64  LQSTNPRVCPVDVAIASAMS 5
           L S +P V PVD  I S++S
Sbjct: 125 LYSADPTVTPVDFTIDSSVS 144


>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
           gi|482566867|gb|EOA31056.1| hypothetical protein
           CARUB_v10014208mg [Capsella rubella]
          Length = 319

 Score =  225 bits (574), Expect = 4e-57
 Identities = 111/140 (79%), Positives = 125/140 (89%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           +YQRFPKV+IRE+KDDY KFELR+TDVS+ANALRRVMI+EVPTVAIDLVEIE NSSVLND
Sbjct: 5   TYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTS+ AM+MRFSRDCDACDGDGQCEFCSVEF LS +C +DQT+DVTS D
Sbjct: 65  EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124

Query: 64  LQSTNPRVCPVDVAIASAMS 5
           L S +P V PVD  I S+ S
Sbjct: 125 LYSADPTVTPVDFTIDSSAS 144


>ref|XP_004956290.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Setaria italica]
          Length = 325

 Score =  225 bits (573), Expect = 5e-57
 Identities = 114/141 (80%), Positives = 125/141 (88%), Gaps = 1/141 (0%)
 Frame = -2

Query: 436 ASRTSYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSS 257
           A+ +SYQRFP+VRIRE+KDDY KFELRDTD SIANALRRVMIAEVPTVAIDLVEIE NSS
Sbjct: 5   AAGSSYQRFPRVRIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSS 64

Query: 256 VLNDEFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTMD 80
           VLNDEF+AHRLGLIPLTS  AM MRFSRDCDACDGDG CE+CSVEF LS R  DSDQT++
Sbjct: 65  VLNDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFNLSARATDSDQTLE 124

Query: 79  VTSADLQSTNPRVCPVDVAIA 17
           VTS DL+S +P+VCPVD A A
Sbjct: 125 VTSNDLRSADPKVCPVDQARA 145


>ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
           gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA
           polymerase II [Oryza sativa Japonica Group]
           gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa
           Japonica Group] gi|215692481|dbj|BAG87901.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215697124|dbj|BAG91118.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215768432|dbj|BAH00661.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218201657|gb|EEC84084.1| hypothetical protein
           OsI_30378 [Oryza sativa Indica Group]
           gi|222641056|gb|EEE69188.1| hypothetical protein
           OsJ_28369 [Oryza sativa Japonica Group]
          Length = 330

 Score =  225 bits (573), Expect = 5e-57
 Identities = 113/141 (80%), Positives = 124/141 (87%), Gaps = 1/141 (0%)
 Frame = -2

Query: 436 ASRTSYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSS 257
           A   SYQRFP+VRIRE+KDDY KFELRDTD S+ANALRRVMIAEVPTVAIDLVEIE NSS
Sbjct: 5   AGGVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 64

Query: 256 VLNDEFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTMD 80
           VLNDEF+AHRLGLIPLTS  AM MRFSRDCDACDGDG CE+CSVEF L+ R  DSDQT++
Sbjct: 65  VLNDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLE 124

Query: 79  VTSADLQSTNPRVCPVDVAIA 17
           VTS DL+ST+P+VCPVD A A
Sbjct: 125 VTSNDLRSTDPKVCPVDQARA 145


>tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea mays]
          Length = 260

 Score =  225 bits (573), Expect = 5e-57
 Identities = 114/140 (81%), Positives = 124/140 (88%), Gaps = 1/140 (0%)
 Frame = -2

Query: 433 SRTSYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSV 254
           S TSYQRFP+VRIRE+KDDY KFELRDTD S+ANALRRVMIAEVPTVAIDLVEIE NSSV
Sbjct: 5   SGTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 64

Query: 253 LNDEFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTMDV 77
           LNDEF+AHRLGLIPLTS  AM MRFSRDCDACDGDG CE+CSVEF LSV   DSDQT++V
Sbjct: 65  LNDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEV 124

Query: 76  TSADLQSTNPRVCPVDVAIA 17
           TS DL+S +P+VCPVD A A
Sbjct: 125 TSNDLRSMDPKVCPVDQARA 144


>ref|NP_001149261.1| LOC100282883 [Zea mays] gi|195625852|gb|ACG34756.1| DNA-directed
           RNA polymerase II 36 kDa polypeptide A [Zea mays]
           gi|223974247|gb|ACN31311.1| unknown [Zea mays]
           gi|414588991|tpg|DAA39562.1| TPA: DNA-directed RNA
           polymerase II polypeptide A [Zea mays]
          Length = 328

 Score =  225 bits (573), Expect = 5e-57
 Identities = 114/140 (81%), Positives = 124/140 (88%), Gaps = 1/140 (0%)
 Frame = -2

Query: 433 SRTSYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSV 254
           S TSYQRFP+VRIRE+KDDY KFELRDTD S+ANALRRVMIAEVPTVAIDLVEIE NSSV
Sbjct: 5   SGTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 64

Query: 253 LNDEFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTMDV 77
           LNDEF+AHRLGLIPLTS  AM MRFSRDCDACDGDG CE+CSVEF LSV   DSDQT++V
Sbjct: 65  LNDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEV 124

Query: 76  TSADLQSTNPRVCPVDVAIA 17
           TS DL+S +P+VCPVD A A
Sbjct: 125 TSNDLRSMDPKVCPVDQARA 144


>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 588

 Score =  224 bits (572), Expect = 7e-57
 Identities = 109/132 (82%), Positives = 119/132 (90%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SYQRFPKV+IREMKDDYLKFELRDTD S+ANALRRVMIAEVPT+AIDLVEIE NSSVLND
Sbjct: 5   SYQRFPKVKIREMKDDYLKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTSD AM+MRFSRDCDACDGDGQCEFCSVEF L  +C SDQT+DVTS D
Sbjct: 65  EFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFLLRAKCISDQTLDVTSKD 124

Query: 64  LQSTNPRVCPVD 29
           L + +  V P+D
Sbjct: 125 LYTADHTVVPID 136


>ref|XP_006660419.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Oryza brachyantha]
          Length = 330

 Score =  224 bits (572), Expect = 7e-57
 Identities = 113/141 (80%), Positives = 125/141 (88%), Gaps = 1/141 (0%)
 Frame = -2

Query: 436 ASRTSYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSS 257
           A+  SYQRFP+VRIRE+KDDY KFELRDTD S+ANALRRVMIAEVPTVAIDLVEIE NSS
Sbjct: 5   AAGASYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 64

Query: 256 VLNDEFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTMD 80
           VLNDEF+AHRLGLIPLTS  AM MRFSRDCDACDGDG CE+CSVEF L+ R  DSDQT++
Sbjct: 65  VLNDEFIAHRLGLIPLTSAAAMGMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLE 124

Query: 79  VTSADLQSTNPRVCPVDVAIA 17
           VTS DL+ST+P+VCPVD A A
Sbjct: 125 VTSNDLRSTDPKVCPVDQARA 145


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
           gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata
           subsp. lyrata]
          Length = 319

 Score =  224 bits (572), Expect = 7e-57
 Identities = 110/140 (78%), Positives = 124/140 (88%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           +YQRFPK+ IRE+KDDY KFELR+TDVS+ANALRRVMI+EVPTVAIDLVEIE NSSVLND
Sbjct: 5   TYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTS+ AM+MRFSRDCDACDGDGQCEFCSVEF LS +C +DQT+DVTS D
Sbjct: 65  EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDVTSRD 124

Query: 64  LQSTNPRVCPVDVAIASAMS 5
           L S +P V PVD  I S+ S
Sbjct: 125 LYSADPTVTPVDFTIDSSAS 144


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  224 bits (571), Expect = 9e-57
 Identities = 111/141 (78%), Positives = 123/141 (87%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SYQRFP+V+IREM+ DYLKFELRDTD S+ANALRRVMIAEVPTVAIDLVEIE NSSVLND
Sbjct: 5   SYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTSD AM+MRFSRDCDACDGDGQCE+CSVEF L  RC SDQT+DVTS +
Sbjct: 65  EFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDVTSKE 124

Query: 64  LQSTNPRVCPVDVAIASAMSA 2
           L S++  V PVD + AS   A
Sbjct: 125 LLSSDHTVVPVDFSDASGYEA 145


>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  224 bits (571), Expect = 9e-57
 Identities = 109/141 (77%), Positives = 124/141 (87%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SYQR P+V+IREM+DDY+KFELRDTD S+ANALRRVMIAEVPTVAIDLVEIE NSSVLND
Sbjct: 5   SYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTSD AM+MRFSRDCDACDGDGQCEFCSVEF L  +C SDQT+DVTS D
Sbjct: 65  EFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124

Query: 64  LQSTNPRVCPVDVAIASAMSA 2
           L S++  V PVD + ++ M +
Sbjct: 125 LLSSDHTVVPVDFSDSAGMES 145


>ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Brachypodium distachyon]
          Length = 330

 Score =  223 bits (569), Expect = 2e-56
 Identities = 111/141 (78%), Positives = 126/141 (89%), Gaps = 1/141 (0%)
 Frame = -2

Query: 436 ASRTSYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSS 257
           A+  SYQRFP+VRIRE+KDDY KFELRDTD S+ANALRRVMIAEVPTVAIDLVEIESNSS
Sbjct: 5   AAGVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIESNSS 64

Query: 256 VLNDEFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRC-DSDQTMD 80
           VLNDEF+AHRLGLIPLTS  AM MRFSRDCDACDGDG CE CSVEF L+ R  D+++T++
Sbjct: 65  VLNDEFIAHRLGLIPLTSSGAMGMRFSRDCDACDGDGSCEHCSVEFHLAARATDANKTLE 124

Query: 79  VTSADLQSTNPRVCPVDVAIA 17
           VTS DL+ST+P+VCPVD A+A
Sbjct: 125 VTSNDLRSTDPKVCPVDQAMA 145


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Solanum lycopersicum]
          Length = 319

 Score =  223 bits (567), Expect = 3e-56
 Identities = 105/138 (76%), Positives = 126/138 (91%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SYQRFPK+++RE+KDD++KFELRDTD SIANALRR+MIAEVPT+AIDLVEIE NSSVLND
Sbjct: 5   SYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF++HRLGL+PLTS+ AM+MRFSRDCDACDGDGQCE+CSVEF+L V+C SDQT+DVTS D
Sbjct: 65  EFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDVTSKD 124

Query: 64  LQSTNPRVCPVDVAIASA 11
           L S++  V PVD + AS+
Sbjct: 125 LLSSDHTVVPVDYSDASS 142


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score =  223 bits (567), Expect = 3e-56
 Identities = 108/139 (77%), Positives = 124/139 (89%)
 Frame = -2

Query: 427 TSYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLN 248
           +SYQRFPKV+IRE++DDY KFELRDTD S+ANALRRVMIAEVPT+AIDLVEIE NSSVLN
Sbjct: 4   SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63

Query: 247 DEFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSA 68
           DEF+AHRLGLIPLTS+ AM+MRFSRDCDACDGDGQCEFCSVEF L  +C SDQT+DVTS 
Sbjct: 64  DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123

Query: 67  DLQSTNPRVCPVDVAIASA 11
           DL S++  V PVD + ++A
Sbjct: 124 DLYSSDHTVVPVDFSDSAA 142


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Glycine max]
          Length = 320

 Score =  223 bits (567), Expect = 3e-56
 Identities = 110/138 (79%), Positives = 122/138 (88%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SY R P+V+IRE+KDDY KFELRDTD SIANALRRVMIAEVPTVAIDLVEIE NSSVLND
Sbjct: 6   SYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLND 65

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTS+ AM+MRFSRDCDACDGDGQCEFCSVEF L V+C +DQT+DVTS D
Sbjct: 66  EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKD 125

Query: 64  LQSTNPRVCPVDVAIASA 11
           L S++P V PVD +  SA
Sbjct: 126 LYSSDPTVSPVDFSDPSA 143


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Glycine max]
          Length = 319

 Score =  223 bits (567), Expect = 3e-56
 Identities = 110/138 (79%), Positives = 122/138 (88%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SY R P+V+IRE+KDDY KFELRDTD SIANALRRVMIAEVPTVAIDLVEIE NSSVLND
Sbjct: 6   SYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLND 65

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTS+ AM+MRFSRDCDACDGDGQCEFCSVEF L V+C +DQT+DVTS D
Sbjct: 66  EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKD 125

Query: 64  LQSTNPRVCPVDVAIASA 11
           L S++P V PVD +  SA
Sbjct: 126 LYSSDPTVSPVDFSDPSA 143


>gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
           thaliana]
          Length = 319

 Score =  223 bits (567), Expect = 3e-56
 Identities = 109/140 (77%), Positives = 125/140 (89%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           +YQRFPK++IRE+KDDY KFELR+TDVS+ANALRRVMI+EVPTVAIDLVEIE NSSVLND
Sbjct: 5   TYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLI LTS+ AM+MRFSRDCDACDGDGQCEFCSVEF LS +C +DQT+DVTS D
Sbjct: 65  EFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124

Query: 64  LQSTNPRVCPVDVAIASAMS 5
           L S +P V PVD  I S++S
Sbjct: 125 LYSADPTVTPVDFTIDSSVS 144


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
           gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 3-like [Citrus
           sinensis] gi|557524889|gb|ESR36195.1| hypothetical
           protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  222 bits (566), Expect = 3e-56
 Identities = 108/132 (81%), Positives = 119/132 (90%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SYQRFPKV+IRE+KDDY KFELRDTD S+ANALRRVMIAEVPT+AIDLVEIE NSSVLND
Sbjct: 5   SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTS+ AM+MRFSRDCDACDGDGQCEFCSVEF L  +C SDQT+DVTS D
Sbjct: 65  EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124

Query: 64  LQSTNPRVCPVD 29
           L S++  V PVD
Sbjct: 125 LYSSDHSVVPVD 136


>ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutrema salsugineum]
           gi|557110719|gb|ESQ51010.1| hypothetical protein
           EUTSA_v10022739mg [Eutrema salsugineum]
          Length = 369

 Score =  221 bits (563), Expect = 8e-56
 Identities = 107/138 (77%), Positives = 123/138 (89%)
 Frame = -2

Query: 424 SYQRFPKVRIREMKDDYLKFELRDTDVSIANALRRVMIAEVPTVAIDLVEIESNSSVLND 245
           SYQRFPKV+IRE+KDDY KFELR+TDVS+ANALRRVMI+EVPTVAIDLVEI+ NSSVLND
Sbjct: 55  SYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIDINSSVLND 114

Query: 244 EFLAHRLGLIPLTSDDAMTMRFSRDCDACDGDGQCEFCSVEFFLSVRCDSDQTMDVTSAD 65
           EF+AHRLGLIPLTS+ AM+MR SRDCD+CDGDGQCEFCSVEF L  +C +DQT+DVTS D
Sbjct: 115 EFIAHRLGLIPLTSERAMSMRLSRDCDSCDGDGQCEFCSVEFRLQAKCVTDQTLDVTSRD 174

Query: 64  LQSTNPRVCPVDVAIASA 11
           L ST+P V PVD  + S+
Sbjct: 175 LYSTDPTVTPVDFTLDSS 192