BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00020573
         (1999 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [A...   431   e-118
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              420   e-114
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   417   e-114
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   398   e-108
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           397   e-108
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   397   e-107
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   394   e-107
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   392   e-106
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   392   e-106
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   392   e-106
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   391   e-106
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   391   e-106
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   390   e-106
ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Caps...   385   e-104
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   383   e-103
ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis ...   382   e-103
ref|XP_006577030.1| PREDICTED: RNA polymerase sigma factor sigF,...   382   e-103
ref|NP_565856.1| RNA polymerase sigma factor sigF [Arabidopsis t...   381   e-103
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   379   e-102
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   379   e-102

>ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
            gi|548832038|gb|ERM94834.1| hypothetical protein
            AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  431 bits (1108), Expect = e-118
 Identities = 245/533 (45%), Positives = 329/533 (61%), Gaps = 11/533 (2%)
 Frame = -2

Query: 1779 SAVQVHQYSTSLPSQQRDDFKTKIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKRQL 1600
            ++V +H+    L S      + K  Q + D+           E +  E DQ LK  +RQL
Sbjct: 48   ASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASIGAETKNFEIDQYLKDFERQL 107

Query: 1599 LHEHDLWYLFPHNMEKHSL--------PVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 1444
            L+   LWYL P  +   SL        P+  ++++++   S    T       +  S  P
Sbjct: 108  LYWPALWYLSPSRILPKSLLSLPFQCKPLETDIESEIKE-SRKKQT-------NCSSLNP 159

Query: 1443 SDVLELSTKAMIASKRPVFLVDQSNIS--DIEFDKSHFFSLDERPVDGTFTNQQVTIRSG 1270
             DVL L+ +A++ASK    LV+ S+++  + + D S    L E  +     + + TIRS 
Sbjct: 160  MDVLVLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGLKEICIQVPDEDMRTTIRSK 219

Query: 1269 RLLEXXXXXXXXXXXSDNFDYVVPSSRATNHIK-KIIDSNDRLSLFLKGPETKQLLTFKE 1093
            R LE             +F       +    +K K  D ND L  FL GP TKQLLT KE
Sbjct: 220  RHLERQIKRRRVPKKLKDFSANFEIGKKPEKVKNKSFDPNDPLRFFLWGPITKQLLTEKE 279

Query: 1092 EKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMI 913
            E +LF +I+DLMR+E+VK+ L +Q   EPT+ EWA+A G+S   LQSC+  GR SR+KMI
Sbjct: 280  ESELFVKIQDLMRVEEVKKELEMQFGCEPTVVEWARAAGMSYGSLQSCIHFGRKSREKMI 339

Query: 912  SANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIK 733
             AN RLVVHVA+ Y+G+GL +QDLLQEGS GLMKS EKFKP  G RF TYAYWWIR +I+
Sbjct: 340  YANFRLVVHVAKNYQGRGLSIQDLLQEGSVGLMKSLEKFKPKTGCRFSTYAYWWIRQAIR 399

Query: 732  KAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEGHLPTNEEVAKRVGITVDKLESLLLNT 553
            K++FQNSRTIR+PEN + +L  IKNARRL  QEGH PTNEE+A+RVGITVDKLE++ + +
Sbjct: 400  KSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGHRPTNEELAQRVGITVDKLETVRVFS 459

Query: 552  RIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQL 373
            ++PVSI+   WSD D T QEI ADP +E+P+  +AKQ+MR HV +LL +L P+E+ +I L
Sbjct: 460  KLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVAKQLMRRHVRNLLSLLNPRERQVINL 519

Query: 372  QFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            +FGI   ERKSLS+IG M+ +SKERIRQ+ ++A          QGLE Y ELL
Sbjct: 520  RFGIQGRERKSLSEIGGMFNVSKERIRQVESKALEKLKNCTQTQGLEVYAELL 572


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  420 bits (1079), Expect = e-114
 Identities = 243/570 (42%), Positives = 348/570 (61%), Gaps = 11/570 (1%)
 Frame = -2

Query: 1890 LLSPSPSPVIPRTHLGSLGLNYVSIIFEQARKPNYNVSAVQVHQYSTSLPSQQRDDFKTK 1711
            +LS +PS   PRTH  +   + V ++ +Q      ++      ++ TS+  Q++ D    
Sbjct: 7    ILSSTPS-FPPRTHFRNSSSS-VLMLHDQVAPAVASIPTTIARKFPTSVLLQEQRDEYRP 64

Query: 1710 IVQAIPDKVLATANREYSK--------EREKHEFDQCLKYLKRQLLHEHDLWYLFPHNME 1555
              QA+ D+    A  E  +        E    + +Q +   +RQLL +  LWY  P +  
Sbjct: 65   FPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQT 124

Query: 1554 KHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIASKRPVFLVDQ 1375
                P S  +   +T+           D  +S    P DVL L+ KA+ ASK+ V L + 
Sbjct: 125  GEKSPFSSSIMKSITT-----------DIENSMDVKPCDVLALAKKALSASKQAVSLYEN 173

Query: 1374 SNI--SDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXSDNFDYVV 1201
            + +  +D+E   S        P       ++ T+RS RLLE           + + ++  
Sbjct: 174  AKLLGADLEDSPSPSLGAISSP---NLPLEEKTVRSTRLLERRSKKRRNPKVAVHENHGS 230

Query: 1200 PSSRATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQ 1021
              +     I +  D  D L LFL GPET++LLT KEE +L  QI++LMRLE+VK+RL+  
Sbjct: 231  RRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSH 290

Query: 1020 TKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDL 841
             KREPT+ EWA+AVG+SC  LQS L SG  SR K+I ANLR+VVH+A+QY+G+GL+LQDL
Sbjct: 291  LKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDL 350

Query: 840  LQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIK 661
            LQEGS GLM S EKFKP AG RF +YAYWWIR +++KAIFQ+SRTIR+PEN +++L  +K
Sbjct: 351  LQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVK 410

Query: 660  NARRLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVA 484
             A+RL IQEGH  PT EE+A+RVGIT++KL+ LLL+TR+P+S++   W+D D TFQE+ A
Sbjct: 411  EAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTA 470

Query: 483  DPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSK 304
            D  IE PD+++AKQ+MR HV +LL +L PKE+ II+L+FGI     ++LS+IG ++G SK
Sbjct: 471  DTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSK 530

Query: 303  ERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            ER+RQ+  +A         + GLE+Y +LL
Sbjct: 531  ERVRQLEQRALHKLKQCLSSHGLESYTDLL 560


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  417 bits (1073), Expect = e-114
 Identities = 243/580 (41%), Positives = 349/580 (60%), Gaps = 21/580 (3%)
 Frame = -2

Query: 1890 LLSPSPSPVIPRTHLGSLGLN----------YVSIIFEQARKPNYNVSAVQVHQYSTSLP 1741
            +LS +PS   PRTH  +   +          +V ++ +Q      ++      ++ TS+ 
Sbjct: 7    ILSSTPS-FPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTTIARKFPTSVL 65

Query: 1740 SQQRDDFKTKIVQAIPDKVLATANREYSK--------EREKHEFDQCLKYLKRQLLHEHD 1585
             Q++ D      QA+ D+    A  E  +        E    + +Q +   +RQLL +  
Sbjct: 66   LQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPG 125

Query: 1584 LWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIA 1405
            LWY  P +      P S  +   +T+           D  +S    P DVL L+ KA+ A
Sbjct: 126  LWYSLPSSQTGEKSPFSSSIMKSITT-----------DIENSMDVKPCDVLALAKKALSA 174

Query: 1404 SKRPVFLVDQSNI--SDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXX 1231
            SK+ V L + + +  +D+E   S        P       ++ T+RS RLLE         
Sbjct: 175  SKQAVSLYENAKLLGADLEDSPSPSLGAISSP---NLPLEEKTVRSTRLLERRSKKRRNP 231

Query: 1230 XXSDNFDYVVPSSRATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRL 1051
              + + ++    +     I +  D  D L LFL GPET++LLT KEE +L  QI++LMRL
Sbjct: 232  KVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRL 291

Query: 1050 EDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQY 871
            E+VK+RL+   KREPT+ EWA+AVG+SC  LQS L SG  SR K+I ANLR+VVH+A+QY
Sbjct: 292  EEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQY 351

Query: 870  EGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPE 691
            +G+GL+LQDLLQEGS GLM S EKFKP AG RF +YAYWWIR +++KAIFQ+SRTIR+PE
Sbjct: 352  QGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPE 411

Query: 690  NAFAVLKNIKNARRLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSD 514
            N +++L  +K A+RL IQEGH  PT EE+A+RVGIT++KL+ LLL+TR+P+S++   W+D
Sbjct: 412  NMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWAD 471

Query: 513  HDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLS 334
             D TFQE+ AD  IE PD+++AKQ+MR HV +LL +L PKE+ II+L+FGI     ++LS
Sbjct: 472  QDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLS 531

Query: 333  QIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            +IG ++G SKER+RQ+  +A         + GLE+Y +LL
Sbjct: 532  EIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 571


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  398 bits (1022), Expect = e-108
 Identities = 246/573 (42%), Positives = 332/573 (57%), Gaps = 14/573 (2%)
 Frame = -2

Query: 1890 LLSPSPSPVIPRTHLGSLGLNYVSIIFEQARKPNYNVSAVQVHQY--STSLPSQQRDDFK 1717
            LLS SPS    RTHL +   + V I+ EQA     ++      Q+  ++ L  +QRD+F+
Sbjct: 7    LLSSSPS-FPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFR 65

Query: 1716 T--------KIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHN 1561
                     +  QA  D+          + ++  E DQ ++  + QL H    W L    
Sbjct: 66   PLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL---- 121

Query: 1560 MEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIASKRPVFLV 1381
                                  +  I +E         P++V+ L+ +A+ ASK   FL 
Sbjct: 122  ---------------------TDKLIDVE---------PTNVINLAKRALSASKHAAFLA 151

Query: 1380 DQS-NISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXSDNF--D 1210
            D + ++ ++    S  FSL+E  +          +RS R L             D     
Sbjct: 152  DNNTDLDNLASTSSSSFSLEEVKI----------VRSRRHLARQSLNRRAPKTKDLIFET 201

Query: 1209 YVVPSSRATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERL 1030
            Y   S+     + +  D ND L LFL GPETKQLLT KEE +L  QI+DLM LE VK RL
Sbjct: 202  YDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRL 261

Query: 1029 RLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDL 850
              Q  REPTL EWAQAVG+SCH L+  L SG  SR+K+I+ANLR+VVH+A++Y+ +GL L
Sbjct: 262  ESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGL 321

Query: 849  QDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLK 670
            QDLLQEG+ GLMKS EKFKP AG RF TYAYWWIR +I KAIFQ+SRTIR+PEN + +L 
Sbjct: 322  QDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLG 381

Query: 669  NIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQE 493
             +  A+R  IQEG H PT EE+A+RVGI +DKLE LL  TR P+S++   WSD + TFQE
Sbjct: 382  KVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQE 441

Query: 492  IVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYG 313
            I AD  IE PD+++AKQ+MR H+  LL IL  KE+ II+L+FGI   ++KSLS+IG ++G
Sbjct: 442  ITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFG 501

Query: 312  LSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            LSKER+RQ+ ++A         + GL+AY +LL
Sbjct: 502  LSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  397 bits (1021), Expect = e-108
 Identities = 246/573 (42%), Positives = 332/573 (57%), Gaps = 14/573 (2%)
 Frame = -2

Query: 1890 LLSPSPSPVIPRTHLGSLGLNYVSIIFEQARKPNYNVSAVQVHQY--STSLPSQQRDDFK 1717
            LLS SPS    RTHL +   + V I+ EQA     ++      Q+  ++ L  +QRD+F+
Sbjct: 7    LLSSSPS-FPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFR 65

Query: 1716 T--------KIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHN 1561
                     +  QA  D+          + ++  E DQ ++  + QL H    W L    
Sbjct: 66   PLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL---- 121

Query: 1560 MEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIASKRPVFLV 1381
                                  +  I +E         P++V+ L+ +A+ ASK   FL 
Sbjct: 122  ---------------------TDKLIDVE---------PTNVINLAKRALSASKHAAFLA 151

Query: 1380 DQS-NISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXSDNF--D 1210
            D + ++ ++    S  FSL+E  +          +RS R L             D     
Sbjct: 152  DNNTDLDNLASTSSSSFSLEEVKI----------VRSRRHLARQSLNRRAPKTKDLIFET 201

Query: 1209 YVVPSSRATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERL 1030
            Y   S+     + +  D ND L LFL GPETKQLLT KEE +L  QI+DLM LE VK RL
Sbjct: 202  YDSKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRL 261

Query: 1029 RLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDL 850
              Q  REPTL EWAQAVG+SCH L+  L SG  SR+K+I+ANLR+VVH+A++Y+ +GL L
Sbjct: 262  ESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGL 321

Query: 849  QDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLK 670
            QDLLQEG+ GLMKS EKFKP AG RF TYAYWWIR +I KAIFQ+SRTIR+PEN + +L 
Sbjct: 322  QDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLG 381

Query: 669  NIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQE 493
             +  A+R  IQEG H PT EE+A+RVGI +DKLE LL  TR P+S++   WSD + TFQE
Sbjct: 382  KVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQE 441

Query: 492  IVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYG 313
            I AD  IE PD+++AKQ+MR H+  LL IL  KE+ II+L+FGI   ++KSLS+IG ++G
Sbjct: 442  ITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFG 501

Query: 312  LSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            LSKER+RQ+ ++A         + GL+AY +LL
Sbjct: 502  LSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  397 bits (1019), Expect = e-107
 Identities = 249/600 (41%), Positives = 352/600 (58%), Gaps = 27/600 (4%)
 Frame = -2

Query: 1932 ASSSALPMDA-FRLGLLSPSPSPVIPRTHLGSLGLNYVSIIFEQA--RKPNYNVSAVQVH 1762
            +SSSA P     R  L S SPS  +   H             EQA     +  +++V  H
Sbjct: 9    SSSSAFPSTTHLRHPLPSSSPSTSVLMLH-------------EQAVPAVTSVPITSVARH 55

Query: 1761 QYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKR 1606
              ++ L  +QRD+FK         K  +A  D++         ++ +  +F   +   K 
Sbjct: 56   FPTSVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKP 115

Query: 1605 QLLHEHDLWYLFP--HNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVL 1432
            QLL+ HD+  +F       K S P+++E     +  + +N  + +E         P +V+
Sbjct: 116  QLLN-HDILDVFSSLQTGAKPSTPLTLE-----SLTTASNKHMDVE---------PCNVV 160

Query: 1431 ELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXX 1252
             L+ KA+ AS+    L + S     +FD   + SL    V+     ++ T+RS R+LE  
Sbjct: 161  ALAKKALSASREAASLAEDSQSMGADFDDLGYTSLANWIVE-----EEKTVRSTRILERR 215

Query: 1251 XXXXXXXXXSDNFDYVVPSSRATNH-------------IKKIIDSNDRLSLFLKGPETKQ 1111
                            VP S+   H             I +  + ND L LFL GPET+Q
Sbjct: 216  RKRIKTRK--------VPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQ 267

Query: 1110 LLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRH 931
            LLT KEE +L  +++DL +LE+VK RL+ Q  REPTL EWA+AVGISC  L+S L SG  
Sbjct: 268  LLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTS 327

Query: 930  SRDKMISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWW 751
            SR+K+I ANLR+VVH+A+QY+G+GL LQDL+QEGS GLMKS EKFKP AG RF TYAYWW
Sbjct: 328  SREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWW 387

Query: 750  IRHSIKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKL 574
            IR +++KAIFQ+SRTIR+PEN +++L  +  A++ CIQEG H P  EE+A+RVGITV+KL
Sbjct: 388  IRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKL 447

Query: 573  ESLLLNTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPK 394
            E LL  TR+P+S++   W+D D TFQE+ AD  +E PD+++AKQ+MR HV  LL IL  +
Sbjct: 448  EKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLR 507

Query: 393  EKAIIQLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            E+ II+L++GI   +++SLS+IG M+GLSKER+RQ+ ++A         +QGL AY  LL
Sbjct: 508  EREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLL 567


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  394 bits (1012), Expect = e-107
 Identities = 229/567 (40%), Positives = 339/567 (59%), Gaps = 12/567 (2%)
 Frame = -2

Query: 1878 SPSPVIPRTHLGSLGLNYVSIIFEQARKP--NYNVSAVQVHQYSTSLPSQQRDDFKTKIV 1705
            S SP  P +   S     V+++ EQA     +++ S+   H  ++ L  +QRD++K  + 
Sbjct: 3    SSSPPFPSSSSPS-----VTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLH 57

Query: 1704 QAIPDKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEV 1525
                +  L T   + +   EK            QL+H+      F   +   S   ++  
Sbjct: 58   VHNKETTLNTRQMDMTSVHEKGNTSNA-----DQLVHD------FVQQLHLRSHLQNLLT 106

Query: 1524 DAKVTSISGNNNTIPIE-DTPHSGSGAPSDVLELSTKAMIASKRPVFLVDQSNISDIEFD 1348
             +    I+ ++   P++ D+     G P + + L+ +A+ ASK+ V    +  + +I+ D
Sbjct: 107  CSPTRGIAASSILQPVDIDSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDD 166

Query: 1347 KSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXS--DNFDYVVPSS------ 1192
                  L    +  +   +   +RS R++E              D   Y+   S      
Sbjct: 167  DPLPSGLASTSLTDSSLKKNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRL 226

Query: 1191 RATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKR 1012
            R    +K+  D ND L LFL GPE++QLLT +EE  L TQ++DL RLE+VK RL+ Q +R
Sbjct: 227  RLEKKLKEGYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRR 286

Query: 1011 EPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQE 832
            EPTLAEWA AVG SC+ LQ+ L     S++K+  ANLR+VVH+A+ Y+G+GL LQDL QE
Sbjct: 287  EPTLAEWADAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQE 346

Query: 831  GSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNAR 652
            GS GLMKS EKFKP AG RF TYAYWWIRH+++KAIF +SRTIR+PEN + +L  +  A+
Sbjct: 347  GSTGLMKSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAK 406

Query: 651  RLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPA 475
            +  IQEG+L PT EE+A++VGIT++K+++LL  +R P+S++   W+D D TFQEI AD A
Sbjct: 407  KSYIQEGNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSA 466

Query: 474  IESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERI 295
            IE PD+ ++KQ+MR+HVH+LL IL PKE+ II+L+FGI   E K+LS IG ++GL+KER+
Sbjct: 467  IEIPDVTVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERV 526

Query: 294  RQIGNQAXXXXXXXXLAQGLEAYLELL 214
            RQ+ ++A         +QGL+AY +LL
Sbjct: 527  RQLESRALLKLRQCLESQGLDAYTDLL 553


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  392 bits (1007), Expect = e-106
 Identities = 229/534 (42%), Positives = 322/534 (60%), Gaps = 12/534 (2%)
 Frame = -2

Query: 1779 SAVQVHQYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQC 1624
            S+V  H  ++ L  +QRD+++         K  QA  D         + +E+   + DQ 
Sbjct: 45   SSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQL 104

Query: 1623 LKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 1444
            ++ L+ Q LH  DLW L P         VS+ +     S+S         DT  S    P
Sbjct: 105  VQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQ----SLSN--------DTEESVDAEP 152

Query: 1443 SDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRL 1264
             D + L+ KA+ ASK    L +   ++  EF      S    P++     +  T+RS + 
Sbjct: 153  FDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLE-----EVKTVRSTQF 207

Query: 1263 LEXXXXXXXXXXXSDNFDYVVPSSRATNHIKKI---IDSNDRLSLFLKGPETKQLLTFKE 1093
            LE               ++   +SR  +  KK+    D ND L LFL GPET++LLT  E
Sbjct: 208  LERRSKKRKVSKPKVT-NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 266

Query: 1092 EKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMI 913
            E +L  QI+DL+RLE  K +L+ Q  REPTL EWA+A+G+SC  L+S L SG  SR+K+I
Sbjct: 267  EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 326

Query: 912  SANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIK 733
            +ANLRLVVHVA+QY+G+G+ L DLLQEGS GLMKS EKFKP AG RF +YAYWW+R +I+
Sbjct: 327  NANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 386

Query: 732  KAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLN 556
            KAIFQ+SRTIR+PEN + +L  +  A+RL IQEG H P  E++A+RVGITV+KLE L+  
Sbjct: 387  KAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446

Query: 555  TRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQ 376
            TR+P+S++   W+D D TFQEI AD  +E PD+++ KQ+MR HV +LL +L PKE+ I++
Sbjct: 447  TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 506

Query: 375  LQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            L+FGI   + KSLS++G ++GLSKER+RQ+ ++A          +    Y +LL
Sbjct: 507  LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 560


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  392 bits (1007), Expect = e-106
 Identities = 229/534 (42%), Positives = 322/534 (60%), Gaps = 12/534 (2%)
 Frame = -2

Query: 1779 SAVQVHQYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQC 1624
            S+V  H  ++ L  +QRD+++         K  QA  D         + +E+   + DQ 
Sbjct: 53   SSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQL 112

Query: 1623 LKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 1444
            ++ L+ Q LH  DLW L P         VS+ +     S+S         DT  S    P
Sbjct: 113  VQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQ----SLSN--------DTEESVDAEP 160

Query: 1443 SDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRL 1264
             D + L+ KA+ ASK    L +   ++  EF      S    P++     +  T+RS + 
Sbjct: 161  FDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLE-----EVKTVRSTQF 215

Query: 1263 LEXXXXXXXXXXXSDNFDYVVPSSRATNHIKKI---IDSNDRLSLFLKGPETKQLLTFKE 1093
            LE               ++   +SR  +  KK+    D ND L LFL GPET++LLT  E
Sbjct: 216  LERRSKKRKVSKPKVT-NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 274

Query: 1092 EKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMI 913
            E +L  QI+DL+RLE  K +L+ Q  REPTL EWA+A+G+SC  L+S L SG  SR+K+I
Sbjct: 275  EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334

Query: 912  SANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIK 733
            +ANLRLVVHVA+QY+G+G+ L DLLQEGS GLMKS EKFKP AG RF +YAYWW+R +I+
Sbjct: 335  NANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 394

Query: 732  KAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLN 556
            KAIFQ+SRTIR+PEN + +L  +  A+RL IQEG H P  E++A+RVGITV+KLE L+  
Sbjct: 395  KAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454

Query: 555  TRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQ 376
            TR+P+S++   W+D D TFQEI AD  +E PD+++ KQ+MR HV +LL +L PKE+ I++
Sbjct: 455  TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 514

Query: 375  LQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            L+FGI   + KSLS++G ++GLSKER+RQ+ ++A          +    Y +LL
Sbjct: 515  LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 568


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  392 bits (1007), Expect = e-106
 Identities = 229/534 (42%), Positives = 322/534 (60%), Gaps = 12/534 (2%)
 Frame = -2

Query: 1779 SAVQVHQYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQC 1624
            S+V  H  ++ L  +QRD+++         K  QA  D         + +E+   + DQ 
Sbjct: 54   SSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQL 113

Query: 1623 LKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 1444
            ++ L+ Q LH  DLW L P         VS+ +     S+S         DT  S    P
Sbjct: 114  VQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQ----SLSN--------DTEESVDAEP 161

Query: 1443 SDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRL 1264
             D + L+ KA+ ASK    L +   ++  EF      S    P++     +  T+RS + 
Sbjct: 162  FDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLE-----EVKTVRSTQF 216

Query: 1263 LEXXXXXXXXXXXSDNFDYVVPSSRATNHIKKI---IDSNDRLSLFLKGPETKQLLTFKE 1093
            LE               ++   +SR  +  KK+    D ND L LFL GPET++LLT  E
Sbjct: 217  LERRSKKRKVSKPKVT-NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 275

Query: 1092 EKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMI 913
            E +L  QI+DL+RLE  K +L+ Q  REPTL EWA+A+G+SC  L+S L SG  SR+K+I
Sbjct: 276  EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 335

Query: 912  SANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIK 733
            +ANLRLVVHVA+QY+G+G+ L DLLQEGS GLMKS EKFKP AG RF +YAYWW+R +I+
Sbjct: 336  NANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 395

Query: 732  KAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLN 556
            KAIFQ+SRTIR+PEN + +L  +  A+RL IQEG H P  E++A+RVGITV+KLE L+  
Sbjct: 396  KAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 455

Query: 555  TRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQ 376
            TR+P+S++   W+D D TFQEI AD  +E PD+++ KQ+MR HV +LL +L PKE+ I++
Sbjct: 456  TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 515

Query: 375  LQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            L+FGI   + KSLS++G ++GLSKER+RQ+ ++A          +    Y +LL
Sbjct: 516  LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 569


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  391 bits (1004), Expect = e-106
 Identities = 224/497 (45%), Positives = 314/497 (63%), Gaps = 4/497 (0%)
 Frame = -2

Query: 1692 DKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKV 1513
            D+ L  A     +E +  + +Q +  L+ QLLH     Y FP    K   P+S     K 
Sbjct: 82   DRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGKGPLSPN---KE 138

Query: 1512 TSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFF 1333
               S  +  +  E  PHS       V+ L+ KA++ASK    L + S +     D SHF 
Sbjct: 139  PLHSKGDKLMNFE--PHS-------VVALARKALLASKEAALLAEDSKL----LDDSHFP 185

Query: 1332 SLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXSDNFDYVVPSSRATNHIKKI---I 1162
            +     +      +Q T+RS R +E                     S   +  +K+   I
Sbjct: 186  NFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESI 245

Query: 1161 DSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQA 982
            D ND L +FL GPETKQLLT KEE +L  +I+  M+L++VK +L++Q  REPT  EWA+A
Sbjct: 246  DLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEA 305

Query: 981  VGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFE 802
             GI+   L+S L SG+ SR+K+I+ANLR+VVH+A+QY+G+GL+LQDLLQEGS GLMKS E
Sbjct: 306  AGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVE 365

Query: 801  KFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEGHL- 625
            KFKP AG RFPTYAYWWIR S++KAIFQ+SRTIR+PEN +A+L  +K+A+R CI++G+  
Sbjct: 366  KFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQGNRH 425

Query: 624  PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAK 445
            PT E++A   G++V++L++LL N R P+S++   WSD D TFQEI AD AIE+P+L+++K
Sbjct: 426  PTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSK 485

Query: 444  QMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXX 265
            Q+MR H+  LL +L PKE+ II+L+FGI   + KSLS+IGA++GLSKER+RQ+  +A   
Sbjct: 486  QLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLETRALYK 545

Query: 264  XXXXXLAQGLEAYLELL 214
                    GL+AY +LL
Sbjct: 546  LKQNLNKHGLDAYSDLL 562


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  391 bits (1004), Expect = e-106
 Identities = 247/582 (42%), Positives = 340/582 (58%), Gaps = 16/582 (2%)
 Frame = -2

Query: 1911 MDAFRLGLLSPSPSPVIPRTHL-GSLGL------NYVSIIFEQARKPNYNVSAVQV-HQY 1756
            M+  R  L SP P P   RTH   SL        N+V ++ EQA     +     +   +
Sbjct: 1    METARTFLSSPPPFP--SRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNF 58

Query: 1755 STS-LPSQQRDDFKTKIVQAIPDKVL-ATANREYSKEREKHEFDQCLKYLKRQLLHEHDL 1582
             TS L  +QRD+F+  +     DK   AT + +        +   C   L + +LH +  
Sbjct: 59   PTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQLILHSNLS 118

Query: 1581 WYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIAS 1402
            W L                   + SI+ N + + + +        P++V++L+ KA+ AS
Sbjct: 119  WSL------------------TMQSITTNTDELMVVE--------PTNVIDLARKALSAS 152

Query: 1401 KRPVFLVDQ-SNISDIEFDKSHFFSLDERPVD-GTFTNQQV-TIRSGRLLEXXXXXXXXX 1231
            K    L  + +N+ D         S    P D   F+ ++V T+RS R LE         
Sbjct: 153  KEAALLAQKCANLDDT-------VSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVT 205

Query: 1230 XXSDNFDYVVPSSRA--TNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLM 1057
               + F     S RA     I +  D  D L LFL GPETKQLLT KEE +L  Q++DLM
Sbjct: 206  KTKEIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLM 265

Query: 1056 RLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVAR 877
             LE+VKE+ +LQ  R+PTL EWA AVG+S   +QS L SG  SR+K+I+ANLR+VVH+A+
Sbjct: 266  SLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAK 325

Query: 876  QYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRI 697
            QY+G+GL LQDLLQEGS GLMKS EKFKP  G RF TYAYWWIR +++KAIFQ+SRTIR+
Sbjct: 326  QYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRL 385

Query: 696  PENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPW 520
            PEN +  L  +  A+R  I EG H PT EE+AKR+GIT  +LE LL   R+P+S++   W
Sbjct: 386  PENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVW 445

Query: 519  SDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKS 340
            +D + TFQEI AD  +E P+L +AKQ+MR HV SLL IL P+E+ II+L++GI   ++KS
Sbjct: 446  ADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKS 505

Query: 339  LSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            LS+IG+++GLSKER+RQ+ ++A         + GLEAY +LL
Sbjct: 506  LSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLL 547


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Glycine max]
          Length = 554

 Score =  390 bits (1003), Expect = e-106
 Identities = 231/567 (40%), Positives = 337/567 (59%), Gaps = 12/567 (2%)
 Frame = -2

Query: 1878 SPSPVIPRTHLGSLGLNYVSIIFEQARKP--NYNVSAVQVHQYSTSLPSQQRDDFKTKIV 1705
            S SP  P +   S     V+++ EQA     +++ S+   H  ++ L  +QRD++K  + 
Sbjct: 3    SSSPPFPSSSSPS-----VTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLH 57

Query: 1704 QAIPDKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEV 1525
                +  L T   + +   EK            QL+H+      F   +   S   ++  
Sbjct: 58   VHNKETTLNTRQMDMTSVHEKGNMSN-----GDQLVHD------FVQQLHLRSHLQNLLT 106

Query: 1524 DAKVTSISGNNNTIPIE-DTPHSGSGAPSDVLELSTKAMIASKRPVFLVDQSNISDIEFD 1348
             +    I+ ++   P++ D+     G P + + L+ +A+ ASK+ V    +  + +I+ D
Sbjct: 107  CSPTRGIAASSILQPVDIDSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDD 166

Query: 1347 KSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXS--DNFDYVVPSS------ 1192
                F L    +  +   +   +RS R++E              D   Y+   S      
Sbjct: 167  DPLPFGLASTSLANSSLKKNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRL 226

Query: 1191 RATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKR 1012
            R    +K+  D ND L LFL GPE++QLLT +EE  L TQ++DL R E+VK RL+ Q +R
Sbjct: 227  RLEKKLKEGYDQNDPLRLFLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRR 286

Query: 1011 EPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQE 832
            EPTLAEWA AVG+SC+ LQ+ L     S++K+  ANLR+VVH+A+ Y+G+GL LQDL QE
Sbjct: 287  EPTLAEWADAVGLSCYTLQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQE 346

Query: 831  GSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNAR 652
            GS GLMKS +KFKP AG RF TYAYWWIRH+I+KAIF +SRTIR+PEN + +L  +  A+
Sbjct: 347  GSTGLMKSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAK 406

Query: 651  RLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPA 475
            +  IQEG+L PT EE+A+RVGITV+KL++LL  +R P+S++   W D D TFQEI AD A
Sbjct: 407  KSYIQEGNLHPTKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSA 466

Query: 474  IESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERI 295
            IE P + ++KQ+MR HVH+LL IL PKEK II+L+FGI   + K+LS IG ++GL+KER+
Sbjct: 467  IEIPGVTVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERV 526

Query: 294  RQIGNQAXXXXXXXXLAQGLEAYLELL 214
            RQ+  +A         +QGL+AY++LL
Sbjct: 527  RQLECRALSKLKQCLESQGLDAYIDLL 553


>ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Capsella rubella]
            gi|482562655|gb|EOA26845.1| hypothetical protein
            CARUB_v10022939mg [Capsella rubella]
          Length = 547

 Score =  385 bits (989), Expect = e-104
 Identities = 242/583 (41%), Positives = 345/583 (59%), Gaps = 17/583 (2%)
 Frame = -2

Query: 1911 MDAFRLGLLSPSPSPVIPRTHLGSLGL-NYVSIIFEQARKP----NYNVSAVQVHQYSTS 1747
            M+A R  L+S SPS    +THL +    + V ++ EQ   P    + +++++  H  ++ 
Sbjct: 1    MEATR-NLVSSSPS-FQTKTHLKNYSSPSLVVMLHEQTATPVVVNSRHLNSLSRHFPASV 58

Query: 1746 LPSQQRDDFKTKIVQAIPDKVLATANREYSKEREKHEFDQCL-----KYLKRQLLHEHDL 1582
            L  + R++ +       P       +R      E+ +FD+ +     +  ++QL+    L
Sbjct: 59   LSQEPREESR-------PLSHAFREDRTSQLTLERRQFDELVSSREDETFEQQLIQSAGL 111

Query: 1581 WYLF--PHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMI 1408
            W L   P   EK  LP +V                P+ D          DV+ L+ KA+ 
Sbjct: 112  WNLLISPITAEKQ-LPAAVS---------------PLADAELC------DVVALAQKALS 149

Query: 1407 ASKRPVFLVD--QSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXX 1234
            ASK+   L D  ++N SD   D     S    P +GT       +RS RLLE        
Sbjct: 150  ASKQAALLADDTEANPSDNSGDSLSTSSSMSLPEEGTI------VRSKRLLERRAKNRRA 203

Query: 1233 XXXSD--NFDYVVPSSRATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDL 1060
               +D  N  YV   S A    K+ +D++D L LFL GPETKQLLT KEE +L + I+ L
Sbjct: 204  PKSNDVDNEGYVPQKSNAKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHL 263

Query: 1059 MRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVA 880
            ++LE VK +L  Q   EPT+ EWA+A+GIS   L+S +  GR SR+K+I+ANLRLVVH+A
Sbjct: 264  LKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSEIHRGRSSREKLITANLRLVVHIA 323

Query: 879  RQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIR 700
            +QY+ +GL+ QDLLQEGS GLMKS EKFKP +G RF TYAYWWIR SI+K+IFQNSRTIR
Sbjct: 324  KQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIR 383

Query: 699  IPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRP 523
            +PEN + +L  +  AR+ C+QEG + P+ E++A  VG++ +KL+ LL NTR P+S++   
Sbjct: 384  LPENVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSKEKLDKLLYNTRTPLSMQQPI 443

Query: 522  WSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERK 343
            WSD D TFQEI  D  IE P +++ KQ+MR HV +LL +L PKE++II+L+FGI   +++
Sbjct: 444  WSDQDTTFQEITPDSGIEIPTISVGKQLMRNHVRNLLNVLSPKERSIIKLRFGIEGGKQR 503

Query: 342  SLSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            SLS+IG +YGLSKER+RQ+ ++A         + GL AY +LL
Sbjct: 504  SLSEIGEIYGLSKERVRQLESRALYRLKQNMSSHGLHAYADLL 546


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  383 bits (983), Expect = e-103
 Identities = 221/496 (44%), Positives = 310/496 (62%), Gaps = 3/496 (0%)
 Frame = -2

Query: 1692 DKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKV 1513
            D+ L  A     +E +  + +Q +  L+ QLL      Y FP    K   P+S     K 
Sbjct: 82   DRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGPSYSFPPYYLKGKGPLSPN---KE 138

Query: 1512 TSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFF 1333
               S  +  +  E  PHS       V+ L+ KA++AS+    L + S + D   D +   
Sbjct: 139  PLHSKGDKLMNFE--PHS-------VVALARKALLASREAALLAEDSKLLD---DSNFPN 186

Query: 1332 SLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXSDNFDYVVPSSR--ATNHIKKIID 1159
             L    VD     Q+ T+RS R  E           +        S R      + + ID
Sbjct: 187  FLSTNLVDDKLKEQR-TVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPDVRRKVNESID 245

Query: 1158 SNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAV 979
             ND L +FL GPETKQLLT KEE +L  +I+  M+L++VK +L++Q   EPT  EWA+A 
Sbjct: 246  LNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAA 305

Query: 978  GISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEK 799
            GI+   L+S L SG+ SR+K+I+ANLR+VVH+A+QY+G+GL+LQDLLQEGS GLMKS EK
Sbjct: 306  GITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEK 365

Query: 798  FKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEGH-LP 622
            FKP AG RFPTYAYWWIR S++KAIFQ+SRTIR+PEN +A+L  +K+A++ CIQ+G+  P
Sbjct: 366  FKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYP 425

Query: 621  TNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQ 442
            T E++A   G++V++L++LL N R P+S++   WSD D TFQEI AD AIE+P+L+++KQ
Sbjct: 426  TKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQ 485

Query: 441  MMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXX 262
            +MR H+  LL +L PKE+ II+L+FGI   + KSLS+IG ++GLSKER+RQ+  +A    
Sbjct: 486  LMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQLETRALYKL 545

Query: 261  XXXXLAQGLEAYLELL 214
                   GL+AY +LL
Sbjct: 546  KQNLNKHGLDAYSDLL 561


>ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
            gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70
            factor [Arabidopsis lyrata subsp. lyrata]
          Length = 546

 Score =  382 bits (982), Expect = e-103
 Identities = 238/580 (41%), Positives = 337/580 (58%), Gaps = 14/580 (2%)
 Frame = -2

Query: 1911 MDAFRLGLLSPSPSPVIPRTHLGSLGL-NYVSIIFEQARKPNYN---VSAVQVHQYSTSL 1744
            M+A R  L+S SPS    +THL S    + V ++ EQ   P  N   ++++  H  ++ L
Sbjct: 1    MEATR-NLVSSSPS-FQTKTHLKSYSSPSSVVMLHEQTTTPVVNSRHLNSLSRHFPASVL 58

Query: 1743 PSQQRDDFKTKIVQAIPDKV--LATANREYSK---EREKHEFDQCLKYLKRQLLHEHDLW 1579
              + R++ +        D+   L    R++ +    RE  +F+Q       QLLH   LW
Sbjct: 59   SQEPREESRPLSHALREDRTSQLTLERRQFDELVSSREDEKFEQ-------QLLHSAGLW 111

Query: 1578 YLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIASK 1399
             L                   ++ ++      P+   P        D++ L+ KA+ ASK
Sbjct: 112  NLL------------------ISPLTAETKLPPV--VPPLADAELCDIVALAQKALSASK 151

Query: 1398 RPVFLVD--QSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXX 1225
            +   L D  ++N SD         S    P  G        +RS R LE           
Sbjct: 152  QAALLADDTEANPSDNTRGSLSTSSSMSLPEKGAI------VRSKRQLERRAKNRRAPKS 205

Query: 1224 SD--NFDYVVPSSRATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRL 1051
            +D  N  YV     A    K+ +D++D L LFL GPETKQLLT KEE +L + I+ L++L
Sbjct: 206  NDVDNEGYVPQKINAKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKL 265

Query: 1050 EDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQY 871
            E VK +L  Q   EPT+ EWA+A+GIS   L+S +  GR SR+K+I+ANLRLVVH+A+QY
Sbjct: 266  EKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRSSREKLITANLRLVVHIAKQY 325

Query: 870  EGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPE 691
            + +GL+ QDLLQEGS GLMKS EKFKP +G RF TYAYWWIR SI+K+IFQNSRTIR+PE
Sbjct: 326  QNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPE 385

Query: 690  NAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSD 514
            N + +L  +  AR+ C+QEG + P+ E++A  VG++ +KL+ LL NTR P+S++   WSD
Sbjct: 386  NVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSD 445

Query: 513  HDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLS 334
             D TFQEI  D  IE+P +++ KQMMR HV +LL +L PKE+ II+L+FGI   +++SLS
Sbjct: 446  QDTTFQEITPDSGIETPTMSVGKQMMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLS 505

Query: 333  QIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            +IG +YGLSKER+RQ+ ++A         + GL AY +LL
Sbjct: 506  EIGEIYGLSKERVRQLESRALYRLKQHMNSHGLHAYADLL 545


>ref|XP_006577030.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Glycine max]
          Length = 477

 Score =  382 bits (981), Expect = e-103
 Identities = 204/429 (47%), Positives = 282/429 (65%), Gaps = 9/429 (2%)
 Frame = -2

Query: 1473 DTPHSGSGAPSDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTN 1294
            D+     G P + + L+ +A+ ASK+ V    +  + +I+ D    F L    +  +   
Sbjct: 48   DSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPFGLASTSLANSSLK 107

Query: 1293 QQVTIRSGRLLEXXXXXXXXXXXS--DNFDYVVPSS------RATNHIKKIIDSNDRLSL 1138
            +   +RS R++E              D   Y+   S      R    +K+  D ND L L
Sbjct: 108  KNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRL 167

Query: 1137 FLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGL 958
            FL GPE++QLLT +EE  L TQ++DL R E+VK RL+ Q +REPTLAEWA AVG+SC+ L
Sbjct: 168  FLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTL 227

Query: 957  QSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGS 778
            Q+ L     S++K+  ANLR+VVH+A+ Y+G+GL LQDL QEGS GLMKS +KFKP AG 
Sbjct: 228  QTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGC 287

Query: 777  RFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEGHL-PTNEEVAK 601
            RF TYAYWWIRH+I+KAIF +SRTIR+PEN + +L  +  A++  IQEG+L PT EE+A+
Sbjct: 288  RFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELAR 347

Query: 600  RVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVH 421
            RVGITV+KL++LL  +R P+S++   W D D TFQEI AD AIE P + ++KQ+MR HVH
Sbjct: 348  RVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVH 407

Query: 420  SLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQ 241
            +LL IL PKEK II+L+FGI   + K+LS IG ++GL+KER+RQ+  +A         +Q
Sbjct: 408  NLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQ 467

Query: 240  GLEAYLELL 214
            GL+AY++LL
Sbjct: 468  GLDAYIDLL 476


>ref|NP_565856.1| RNA polymerase sigma factor sigF [Arabidopsis thaliana]
            gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA
            polymerase sigma factor sigF, chloroplastic; Short=Sigma
            factor F; Short=Sigma-F; AltName: Full=Protein SINGLET
            OXYGEN-LINKED DEATH ACTIVATOR 8; AltName: Full=RNA
            polymerase sigma factor sig6; Short=Atsig6; Short=Sigma
            factor 6; Flags: Precursor gi|7209640|dbj|BAA92288.1|
            SigF [Arabidopsis thaliana] gi|7688083|emb|CAB89775.1|
            sigma factor-like protein [Arabidopsis thaliana]
            gi|16604647|gb|AAL24116.1| putative RNA polymerase
            sigma-70 factor [Arabidopsis thaliana]
            gi|20197948|gb|AAD31584.2| putative RNA polymerase
            sigma-70 factor [Arabidopsis thaliana]
            gi|20259557|gb|AAM14121.1| putative RNA polymerase
            sigma-70 factor protein [Arabidopsis thaliana]
            gi|330254238|gb|AEC09332.1| RNA polymerase sigma factor
            sigF [Arabidopsis thaliana]
          Length = 547

 Score =  381 bits (979), Expect = e-103
 Identities = 243/582 (41%), Positives = 342/582 (58%), Gaps = 16/582 (2%)
 Frame = -2

Query: 1911 MDAFRLGLLSPSPSPVIPRTHLGSLGLNYVSIIF--EQARKPNYN---VSAVQVHQYSTS 1747
            M+A R  L+S SPS    +THL S   +  S++   +Q   P  N   ++++  H +  S
Sbjct: 1    MEATR-NLVSSSPS-FQTKTHLKSSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRH-FPAS 57

Query: 1746 LPSQQRDDFKTKIVQAIPDKVLATANREYSKEREKHEFDQCL-----KYLKRQLLHEHDL 1582
            + SQ+  +    +  A+ D      +R      E+ +FD+ +     +  ++QLLH   L
Sbjct: 58   VLSQEPREESRPLSHALRD------DRTSQLTLERRQFDELVSSREDEKFEQQLLHSTGL 111

Query: 1581 WYLFPHNMEKHS-LPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIA 1405
            W L    +   + LP  V                P+ D          DV+ L+ KA+ A
Sbjct: 112  WNLLISPLTSETKLPAVVS---------------PLADAELC------DVVALAQKALSA 150

Query: 1404 SKRPVFLVD--QSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXX 1231
            SK+   LVD  ++N SD   D     S    P  G        +RS R LE         
Sbjct: 151  SKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNI------VRSKRQLERRAKNRRAP 204

Query: 1230 XXSDNFD--YVVPSSRATNHIKKIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLM 1057
              +D  D  YV   + A    K+  D++D L LFL GPETKQLLT KEE +L + I+ L+
Sbjct: 205  KSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLL 264

Query: 1056 RLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVAR 877
            +LE VK +L  Q   EPT+ EWA+A+GIS   L+S +  GR SR+K+I+ANLRLVVH+A+
Sbjct: 265  KLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAK 324

Query: 876  QYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRI 697
            QY+ +GL+ QDLLQEGS GLMKS EKFKP +G RF TYAYWWIR SI+K+IFQNSRTIR+
Sbjct: 325  QYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRL 384

Query: 696  PENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPW 520
            PEN + +L  +  AR+ C+QEG + P+ EE+A  VG++ +KL+ LL NTR P+S++   W
Sbjct: 385  PENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIW 444

Query: 519  SDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKS 340
            SD D TFQEI  D  IE+P +++ KQ+MR HV +LL +L PKE+ II+L+FGI   +++S
Sbjct: 445  SDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRS 504

Query: 339  LSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            LS+IG +YGLSKER+RQ+ ++A         + GL AY +LL
Sbjct: 505  LSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLL 546


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  379 bits (974), Expect = e-102
 Identities = 235/582 (40%), Positives = 345/582 (59%), Gaps = 27/582 (4%)
 Frame = -2

Query: 1878 SPSPVIPRTHL------GSLGLNYVSIIFEQARKP----NYNVSAVQVHQYSTSLPSQQR 1729
            S  P  PRTH        S   + V ++ EQA       + N SA Q    S  LP +QR
Sbjct: 10   SSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSA-QNFPASVLLP-EQR 67

Query: 1728 DDFKTKIVQAIPDK----VLATANRE---YSKEREKHEFDQCLKYLKRQLLHEHDLWYLF 1570
            D+++  +  +  DK    +L+T   +     +E      DQ +   ++ L H  +L YL 
Sbjct: 68   DEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHWPNLQYLL 127

Query: 1569 PHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELSTKAMIASKRPV 1390
                       S ++     S +  + ++ +E  P+   G   + + L+ KA+  SK+  
Sbjct: 128  ----------TSSQIGEVAASSTLEHVSVDLERRPN---GVQFNGVSLAKKALSTSKQES 174

Query: 1389 FLVDQSNISDIEFDKSHF-FSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXS--D 1219
             +V+  ++  I+ D     F L    +      +  T+RS RLLE              D
Sbjct: 175  SVVE--DLKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVID 232

Query: 1218 NFDYVVPSSRATNHIK------KIIDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLM 1057
            +  Y+     A   ++      + +D +D L LFL GPETKQLLT ++E  L +QI+DL+
Sbjct: 233  DETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLL 292

Query: 1056 RLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVAR 877
            RLE+VK  L+ Q  REPT+AEWA+  G++C  LQS L SG  SR+K+I ANLR+VVHVA+
Sbjct: 293  RLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAK 352

Query: 876  QYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRI 697
             Y+G+GL LQDLLQEGS GLMKS EKF P AGSRF  YA+WWIR +I+KA+F++SRTIR+
Sbjct: 353  SYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRL 412

Query: 696  PENAFAVLKNIKNARRLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPW 520
            PE  F +L  +  A++L IQEG+L PT EE+A+RVG+TV+K++ LL + RIP+S++   W
Sbjct: 413  PEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVW 472

Query: 519  SDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKS 340
            +D + TFQEI ADP +E+ D+ + KQ+MR HV ++L +L PKE+ II+L++G    E+KS
Sbjct: 473  ADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKS 532

Query: 339  LSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            LS+IG ++GLSKER+RQ+  +A        + QGL+AY++LL
Sbjct: 533  LSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLL 574


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  379 bits (972), Expect = e-102
 Identities = 240/586 (40%), Positives = 341/586 (58%), Gaps = 20/586 (3%)
 Frame = -2

Query: 1911 MDAFRLGLLSPSPSPVIPRTHLGSLGLNYVS---IIFEQARKP---NYNVSAVQVHQYST 1750
            M+A R  LLSP P+    RT L S   +  S   ++F +   P   +  +++V  H  ++
Sbjct: 1    MEAAR-NLLSPPPT-FSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTS 58

Query: 1749 SLPSQQRDDFKT----------KIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKRQL 1600
             L  +QRDD++           K      DK         ++E   + F Q     +++L
Sbjct: 59   VLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL--GFEKKL 116

Query: 1599 LHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPSDVLELST 1420
            L   DL  L        SL     ++++    S +N      DT       PS+++ L+ 
Sbjct: 117  LQWPDLTQLL-------SL-----LESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAK 164

Query: 1419 KAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXX 1240
            KA+ ASK+   L +   + D++   S+               + VT+RS R LE      
Sbjct: 165  KALSASKQAASLSEDLKL-DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRR 223

Query: 1239 XXXXXSDNFDYVVPSSRATNHIKKI---IDSNDRLSLFLKGPETKQLLTFKEEKDLFTQI 1069
                     +    SSR T+  +K+    D ND L LFL GPETKQLLT KEE +L  Q+
Sbjct: 224  RVQPKVTIRETY--SSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQV 281

Query: 1068 EDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVV 889
            ++LMRLE VK +L+ Q  REPTL EWA+A+G+ C  LQ+ L SG  SRDK+I ANLR+VV
Sbjct: 282  QNLMRLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVV 341

Query: 888  HVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSR 709
            H+A+QY+ +GL LQDLLQEGS GLMKS E+FKP  G RF TYAYWWIR +I+K+I Q+SR
Sbjct: 342  HIAKQYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSR 401

Query: 708  TIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIE 532
            T+R+PEN   +L  + +A++  I+EG H P+ EE+A+RVGITV+KL+ LL  TR+P+S++
Sbjct: 402  TVRLPENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQ 461

Query: 531  GRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCD 352
               W D D TFQE+  D  IE PD+++AKQ+MR HV +LL +L P+E+ II+L+FGI   
Sbjct: 462  QSVWVDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEES 521

Query: 351  ERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXLAQGLEAYLELL 214
            +  SLS+IG M+GLSKER+RQ+ ++A           GL AY++LL
Sbjct: 522  KENSLSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAYVDLL 567