BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00020450
         (2408 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001177299.1| required to maintain repression7 [Zea mays] ...  1168   0.0  
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S...  1168   0.0  
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami...  1167   0.0  
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S...  1166   0.0  
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]   1166   0.0  
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...  1165   0.0  
emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]               1156   0.0  
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a...  1155   0.0  
ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group] g...  1155   0.0  
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]        1155   0.0  
emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]        1155   0.0  
ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D sub...  1125   0.0  
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub...  1125   0.0  
ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D sub...  1125   0.0  
gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticu...  1113   0.0  
gb|EMT10124.1| DNA-directed RNA polymerase II subunit RPB2 [Aegi...  1082   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1063   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1055   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1054   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1047   0.0  

>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
            gi|283443696|gb|ADB19857.1| required to maintain
            repression 7/RNA polymerase D second largest subunit [Zea
            mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
            gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
            RNA polymerase subunit family protein [Zea mays]
          Length = 1229

 Score = 1168 bits (3021), Expect = 0.0
 Identities = 564/719 (78%), Positives = 635/719 (88%), Gaps = 1/719 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+AER SGIVATLRRTNPLQM+SD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 512  WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 571

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V+QP +++ + CGM KL+++  E ++ M K+FLNG+W
Sbjct: 572  STPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNW 631

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG C + +S   RLRCMRR   IDPQVEIK DKH  EVR+FTDAGRILRPLL+V+NL KI
Sbjct: 632  VGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKI 691

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPSFL 1688
            R+ KG + SF  LM             ED Q AWGI+  F + EG+   Y+HCELDPSFL
Sbjct: 692  RKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-EGAISSYTHCELDPSFL 750

Query: 1687 LGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRTV 1508
            LGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP IRVDTLSHQLYYPQ+PLF+TV
Sbjct: 751  LGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTV 810

Query: 1507 VSECLF-STSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRT 1331
            +++CL  S  +S GRK+  ARPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFRT
Sbjct: 811  IADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRT 870

Query: 1330 EHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVIG 1151
            EH RSYKA+VENK  +KRLKLKEK+DFGK +SK+GRVD+LDDDG PYVGASLQ+ DIVIG
Sbjct: 871  EHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDIVIG 930

Query: 1150 KVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 971
            KVSESGEDHSIKLKHTEKGMVQKV+L+ANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKG
Sbjct: 931  KVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKG 990

Query: 970  VVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPFS 791
            VVGFLE+QENFPFT EGIVPDIVINPHAFPTRQTPGQLLEAALGKGIAC+ + RYATPF+
Sbjct: 991  VVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFT 1050

Query: 790  TASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRNT 611
            TASVD IA+QLHR+G+SRWGSE VLNGRTGE + S++FMGPTFYQRLIHM+EDKVKFRNT
Sbjct: 1051 TASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNT 1110

Query: 610  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCHR 431
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHERLF+LSDFSQMHICQ C R
Sbjct: 1111 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCER 1170

Query: 430  AANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
             ANV++R VPGGKKIRGPYC FC+S ENIVRINVPYGAKLLY ELFSMGICLKFET++C
Sbjct: 1171 VANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQVC 1229


>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
            gi|241922081|gb|EER95225.1| hypothetical protein
            SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score = 1168 bits (3021), Expect = 0.0
 Identities = 564/719 (78%), Positives = 635/719 (88%), Gaps = 1/719 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+AER SGIVATLRRTNPLQM+SD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 511  WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 570

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V+QP +++ + CGM KL+++  E ++ M K+FLNG+W
Sbjct: 571  STPDGENCGLVKNLAVTAIVSSRVVQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNW 630

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG C D +S   RLRCMRR   IDPQVEIK DKH KEVR+F+DAGRILRPLL+V+NLKKI
Sbjct: 631  VGSCKDSASFVFRLRCMRRSSLIDPQVEIKRDKHHKEVRVFSDAGRILRPLLVVENLKKI 690

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPSFL 1688
            R+ KG + SF  LM             ED Q AWGI+  F + EG+   Y+HCELDPSFL
Sbjct: 691  RKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-EGAISSYTHCELDPSFL 749

Query: 1687 LGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRTV 1508
            LGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP IRVDTLSHQLYYPQ+PLF+TV
Sbjct: 750  LGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTV 809

Query: 1507 VSECLF-STSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRT 1331
            +++CL  S  ++ GRKD   RPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFRT
Sbjct: 810  IADCLGRSDYTTFGRKDDFMRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRT 869

Query: 1330 EHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVIG 1151
            EH RSYKA+VENK  +KRLKLKEK+DFGK +SK+GRVD+LDDDG PY+GASLQ+ DIVIG
Sbjct: 870  EHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIG 929

Query: 1150 KVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 971
            KVSESGEDHSIKLKHTEKGMVQKV+L+ANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKG
Sbjct: 930  KVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKG 989

Query: 970  VVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPFS 791
            VVGFLE+QENFPFT +GIVPDIVINPHAFPTRQTPGQLLEAALGKGIAC+ + RYATPF+
Sbjct: 990  VVGFLESQENFPFTHKGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFT 1049

Query: 790  TASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRNT 611
            TASVD IA+QLHR+G+SRWG+E VLNGRTGE M S+IFMGPTFYQRLIHM+EDKVKFRNT
Sbjct: 1050 TASVDVIAEQLHRAGYSRWGTENVLNGRTGERMQSLIFMGPTFYQRLIHMSEDKVKFRNT 1109

Query: 610  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCHR 431
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHERLFMLSDFSQMHICQ C R
Sbjct: 1110 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCER 1169

Query: 430  AANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
             ANV++R V GGKKIRGPYC FC+S ENIVRINVPYGAKLLY ELFSMGICLKF+TE+C
Sbjct: 1170 VANVVMRSVSGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFDTEVC 1228


>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 2163

 Score = 1167 bits (3018), Expect = 0.0
 Identities = 561/719 (78%), Positives = 636/719 (88%), Gaps = 1/719 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+AER SGIVATLRRTNPLQM+SD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 1446 WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 1505

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVT++VSSKV+QP +++ + CGM KL+++  E ++ M K+FLNG+W
Sbjct: 1506 STPDGENCGLVKNLAVTSIVSSKVVQPLIESFISCGMNKLNDIPTEHIQRMDKIFLNGNW 1565

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            +G CSD +S   RLRCMRR   IDPQVEIK DKH KEVR+F+DAGRILRPLL+V+NL KI
Sbjct: 1566 LGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDKHYKEVRLFSDAGRILRPLLVVENLNKI 1625

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPSFL 1688
            R+ KG + SF  LM             ED Q AWGI+  F + EG+   Y+HCELDPSF+
Sbjct: 1626 RKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-EGAISSYTHCELDPSFI 1684

Query: 1687 LGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRTV 1508
            LGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP IRVDTLSHQLYYPQ+PLF+TV
Sbjct: 1685 LGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTSNPRIRVDTLSHQLYYPQRPLFKTV 1744

Query: 1507 VSECLF-STSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRT 1331
            +++CL  S  ++ GRKD   RPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFRT
Sbjct: 1745 IADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRT 1804

Query: 1330 EHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVIG 1151
            EH RSYKA+VENK  +KRLKLKEK+DFGK +SK+GRVD+LDDDG PY+GASLQ+ DIVIG
Sbjct: 1805 EHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIG 1864

Query: 1150 KVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 971
            KVSESGEDHSIKLKHTEKGMVQKV+L+ANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKG
Sbjct: 1865 KVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKG 1924

Query: 970  VVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPFS 791
            VVGFLE+QENFPFT +GIVPDIVINPHAFPTRQTPGQLLEAALGKGIAC+ + RYATPF+
Sbjct: 1925 VVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFT 1984

Query: 790  TASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRNT 611
            TASVD IA+QLH++G+SRWG+E VLNGRTGE M S++FMGPTFYQRLIHM+EDKVK+RNT
Sbjct: 1985 TASVDVIAEQLHKAGYSRWGAENVLNGRTGERMKSLVFMGPTFYQRLIHMSEDKVKYRNT 2044

Query: 610  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCHR 431
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHERLFMLSDFSQMHICQ C R
Sbjct: 2045 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCER 2104

Query: 430  AANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
             ANV++R VPGGKKIRGPYC FC+S ENIVRINVPYGAKLLY ELFSMGICLKFETE+C
Sbjct: 2105 VANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETEVC 2163


>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
            gi|241938382|gb|EES11527.1| hypothetical protein
            SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score = 1166 bits (3017), Expect = 0.0
 Identities = 562/719 (78%), Positives = 633/719 (88%), Gaps = 1/719 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+AER SGIVATLRRTNPLQM+SD+RKTRQ+V YAGKAGDARYPNPSYWGKLCFL
Sbjct: 522  WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFL 581

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V QP +++ + CGM KL+++  E ++ M K+FLNG+W
Sbjct: 582  STPDGENCGLVKNLAVTAIVSSRVGQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNW 641

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG C D +S   RLRCMRR   IDPQVEIK DKH KEVR+F+DAGRILRPLL+V+NL KI
Sbjct: 642  VGSCKDSASFVFRLRCMRRSSMIDPQVEIKRDKHHKEVRVFSDAGRILRPLLVVENLNKI 701

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPSFL 1688
            R+ KG + SF  LM             ED Q AWGI+  F + EG+   Y+HCELDPSFL
Sbjct: 702  RKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-EGAISSYTHCELDPSFL 760

Query: 1687 LGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRTV 1508
            +GLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP IRVDTLSHQLYYPQ+PLF+TV
Sbjct: 761  MGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTV 820

Query: 1507 VSECLF-STSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRT 1331
            +++CL  S  ++ GRKD   RPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFRT
Sbjct: 821  IADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRT 880

Query: 1330 EHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVIG 1151
            EH RSYK +VENK  +KRLKLKEK+DFGK +SK+GRVD+LDDDG PY+GASLQ+ DIVIG
Sbjct: 881  EHLRSYKTDVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIG 940

Query: 1150 KVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 971
            KVSESGEDHSIKLKHTEKGMVQKV+L+ANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKG
Sbjct: 941  KVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKG 1000

Query: 970  VVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPFS 791
            VVGFLE+QENFPFT EGIVPDIVINPHAFPTRQTPGQLLEAALGKGIAC+ + RYATPF+
Sbjct: 1001 VVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFT 1060

Query: 790  TASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRNT 611
            TASVD IA+QLH++G+SRWG+E VLNGRTGE M S++FMGPTFYQRLIHM+EDKVKFRNT
Sbjct: 1061 TASVDVIAEQLHKAGYSRWGAENVLNGRTGERMQSLVFMGPTFYQRLIHMSEDKVKFRNT 1120

Query: 610  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCHR 431
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHERLFMLSDFSQMHICQ C R
Sbjct: 1121 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCER 1180

Query: 430  AANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
             ANV++R VPGGKKIRGPYC FC+S ENIVRINVPYGAKLLY ELFSMGICLKF+TE+C
Sbjct: 1181 VANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFDTEVC 1239


>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score = 1166 bits (3016), Expect = 0.0
 Identities = 563/719 (78%), Positives = 634/719 (88%), Gaps = 1/719 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+AER SGIVATLRRTNPLQM+SD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 453  WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 512

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V+QP +++ + CGM KL+++  E ++ M K+FLNG+W
Sbjct: 513  STPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNW 572

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG C + +S   RLRCMRR   IDPQVEIK DKH  EVR+FTDAGRILRPLL+V+NL KI
Sbjct: 573  VGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKI 632

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPSFL 1688
            R+ KG + SF  LM             ED Q AWGI+  F + EG+   Y+HCELDPSFL
Sbjct: 633  RKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-EGAISSYTHCELDPSFL 691

Query: 1687 LGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRTV 1508
            LGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP IRVDTLSHQLYYPQ+PLF+TV
Sbjct: 692  LGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTV 751

Query: 1507 VSECLF-STSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRT 1331
            +++CL  S  +S GRK+  ARPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFRT
Sbjct: 752  IADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRT 811

Query: 1330 EHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVIG 1151
            EH RSYKA+VENK  +KRLKLKEK+DFGK +SK+GR D+LDDDG PYVGASLQ+ DIVIG
Sbjct: 812  EHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRXDNLDDDGLPYVGASLQTNDIVIG 871

Query: 1150 KVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 971
            KVSESGEDHSIKLKHTEKGMVQKV+L+ANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKG
Sbjct: 872  KVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKG 931

Query: 970  VVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPFS 791
            VVGFLE+QENFPFT EGIVPDIVINPHAFPTRQTPGQLLEAALGKGIAC+ + RYATPF+
Sbjct: 932  VVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFT 991

Query: 790  TASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRNT 611
            TASVD IA+QLHR+G+SRWGSE VLNGRTGE + S++FMGPTFYQRLIHM+EDKVKFRNT
Sbjct: 992  TASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNT 1051

Query: 610  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCHR 431
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHERLF+LSDFSQMHICQ C R
Sbjct: 1052 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCER 1111

Query: 430  AANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
             ANV++R VPGGKKIRGPYC FC+S ENIVRINVPYGAKLLY ELFSMGICLKFET++C
Sbjct: 1112 VANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQVC 1170


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score = 1165 bits (3013), Expect = 0.0
 Identities = 563/719 (78%), Positives = 634/719 (88%), Gaps = 1/719 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+AER SGIVATLRRTNPLQM+SD+RKTRQ+V YAGKAGDARYPNPSYW KLCF+
Sbjct: 512  WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWEKLCFM 571

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V+QP +++ + CGM KL+++  E ++ M K+FLNG+W
Sbjct: 572  STPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNW 631

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG C + +S   RLRCMRR   IDPQVEIK DKH  EVR+FTDAGRILRPLL+V+NL KI
Sbjct: 632  VGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKI 691

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPSFL 1688
            R+ KG + SF  LM             ED Q AWGI+  F + EG+   Y+HCELDPSFL
Sbjct: 692  RKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-EGAISSYTHCELDPSFL 750

Query: 1687 LGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRTV 1508
            LGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP IRVDTLSHQLYYPQ+PLF+TV
Sbjct: 751  LGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTV 810

Query: 1507 VSECLF-STSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRT 1331
            +++CL  S  +S GRK+  ARPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFRT
Sbjct: 811  IADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRT 870

Query: 1330 EHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVIG 1151
            EH RSYKA+VENK  +KRLKLKEK+DFGK +SK+GRVD+LDDDG PYVGASLQ+ DIVIG
Sbjct: 871  EHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDIVIG 930

Query: 1150 KVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 971
            KVSESGEDHSIKLKHTEKGMVQKV+L+ANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKG
Sbjct: 931  KVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKG 990

Query: 970  VVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPFS 791
            VVGFLE+QENFPFT EGIVPDIVINPHAFPTRQTPGQLLEAALGKGIAC+ + RYATPF+
Sbjct: 991  VVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFT 1050

Query: 790  TASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRNT 611
            TASVD IA+QLHR+G+SRWGSE VLNGRTGE + S++FMGPTFYQRLIHM+EDKVKFRNT
Sbjct: 1051 TASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNT 1110

Query: 610  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCHR 431
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHERLF+LSDFSQMHICQ C R
Sbjct: 1111 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCER 1170

Query: 430  AANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
             ANV++R VPGGKKIRGPYC FC+S ENIVRINVPYGAKLLY ELFSMGICLKFET++C
Sbjct: 1171 VANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQVC 1229


>emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
          Length = 1343

 Score = 1156 bits (2991), Expect = 0.0
 Identities = 566/742 (76%), Positives = 629/742 (84%), Gaps = 24/742 (3%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+ ER +GIVATLRRTNPLQMISD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 602  WCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 661

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA VSS+V  P +D  + CGM KL E+  E +  M K+FLNGDW
Sbjct: 662  STPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDW 721

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG CSD +S   RLRCMRR   IDPQVEIK DKHQ+EVR+F+DAGRILRPLL+V+NL KI
Sbjct: 722  VGSCSDPASFVLRLRCMRRSGLIDPQVEIKWDKHQREVRVFSDAGRILRPLLVVENLNKI 781

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANE---------------- 1736
            R  KG + SF +LM             ED ++AWGI++ F + E                
Sbjct: 782  RRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNV 841

Query: 1735 -----GSSLKYSHCELDPSFLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPS 1571
                 G    Y+HCELD SFLLGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP 
Sbjct: 842  KRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPH 901

Query: 1570 IRVDTLSHQLYYPQKPLFRTVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGF 1391
            IRVDTLSHQLYYPQ+PLF+TV+++C+  +  + GRKD  ARPEY+NGQNAIVAVNVHQGF
Sbjct: 902  IRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGF 961

Query: 1390 NQEDSLVMNKSSLDRGMFRTEHFRSYKAEVENKVL---SKRLKLKEKVDFGKIDSKKGRV 1220
            NQEDSLVMN++SL+RGMFRTEHFR+YKAEVENK     +KRLK+K+K+DFGK+ SK+GRV
Sbjct: 962  NQEDSLVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRV 1021

Query: 1219 DSLDDDGFPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAV 1040
            D+LDDDG PYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQ+V+L+ANDEGKNFAV
Sbjct: 1022 DNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAV 1081

Query: 1039 VTLRQVRSPCLGDKFSSMHGQKGVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQ 860
            VTLRQVRSPCLGDKFSSMHGQKGVVGFLE+QENFPFT +GIVPDIVINPHAFPTRQTPGQ
Sbjct: 1082 VTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1141

Query: 859  LLEAALGKGIACRDSTRYATPFSTASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMI 680
            LLEAALGKGIA   + RYATPF+TAS D I DQLH++GFSRWG+E VLNGRTGE M S+I
Sbjct: 1142 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLI 1201

Query: 679  FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA 500
            FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA
Sbjct: 1202 FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA 1261

Query: 499  NLHERLFMLSDFSQMHICQKCHRAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYG 320
            NLHERLFMLSDFSQMH+CQ C R ANVI+RPVPGGKKIRGPYC FC+S ENIVRINVPYG
Sbjct: 1262 NLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYG 1321

Query: 319  AKLLYMELFSMGICLKFETELC 254
            AKLLY ELFSMGICL+FETE+C
Sbjct: 1322 AKLLYQELFSMGICLRFETEVC 1343


>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Oryza brachyantha]
          Length = 1250

 Score = 1155 bits (2989), Expect = 0.0
 Identities = 568/744 (76%), Positives = 629/744 (84%), Gaps = 26/744 (3%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYKK ER +GIVATLRRTNPLQMISD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 508  WCHPYKKNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 567

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTAVVSS+V QP ++  + CGM KL E+  E +  M K+FLNGDW
Sbjct: 568  STPDGENCGLVKNLAVTAVVSSRVAQPVINRFISCGMNKLHEIPTEEVPKMDKIFLNGDW 627

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG C+D +S   RLRCMRR   I PQVEIK DKHQ+EVR+F+DAGRILRPLL+V+NL KI
Sbjct: 628  VGSCTDPASFVLRLRCMRRSGLIGPQVEIKWDKHQREVRVFSDAGRILRPLLVVENLNKI 687

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAAN----------------- 1739
            R  KGG+ SF  LM             ED ++AWGI+  F +                  
Sbjct: 688  RRPKGGSYSFQSLMQQEIIEFIGVEEEEDTKSAWGIRHLFGSEGEKAALVKTNRTEDAFT 747

Query: 1738 ------EGSSLKYSHCELDPSFLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVN 1577
                  EG S  Y+HCELD SFLLGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST N
Sbjct: 748  IRRDIEEGVS-GYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTN 806

Query: 1576 PSIRVDTLSHQLYYPQKPLFRTVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQ 1397
            P IRVDTLSHQLYYPQ+PLF+TVV++C+  +  + GRKD  ARPEY+NGQNAIVAVNVHQ
Sbjct: 807  PHIRVDTLSHQLYYPQRPLFKTVVADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQ 866

Query: 1396 GFNQEDSLVMNKSSLDRGMFRTEHFRSYKAEVENKVL---SKRLKLKEKVDFGKIDSKKG 1226
            GFNQEDSLVMN++SL+RGMFRTEHFR+YKAEVENK     +KRLK+K+K+DFGK+ SK+G
Sbjct: 867  GFNQEDSLVMNRASLERGMFRTEHFRNYKAEVENKSAPGGNKRLKMKDKIDFGKMQSKRG 926

Query: 1225 RVDSLDDDGFPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNF 1046
            RVD+LDDDG PYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQ+V+L+ANDEGKNF
Sbjct: 927  RVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNF 986

Query: 1045 AVVTLRQVRSPCLGDKFSSMHGQKGVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTP 866
            AVVTLRQVRSPCLGDKFSSMHGQKGV+GFLE+QENFPFTC+GIVPDIVINPHAFPTRQTP
Sbjct: 987  AVVTLRQVRSPCLGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDIVINPHAFPTRQTP 1046

Query: 865  GQLLEAALGKGIACRDSTRYATPFSTASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSS 686
            GQLLEAALGKGIA   + RYATPF+TAS D I DQLH++GFSRWG+E VLNGRTGE M S
Sbjct: 1047 GQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHS 1106

Query: 685  MIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA 506
            +IFMGP FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA
Sbjct: 1107 LIFMGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA 1166

Query: 505  AANLHERLFMLSDFSQMHICQKCHRAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVP 326
            AANLHERLFMLSDFSQMHICQ C R ANVI+RPVPGGKKIRGPYC FC+S ENI RINVP
Sbjct: 1167 AANLHERLFMLSDFSQMHICQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIARINVP 1226

Query: 325  YGAKLLYMELFSMGICLKFETELC 254
            YGAKLLY ELFSMGICL+FETE+C
Sbjct: 1227 YGAKLLYQELFSMGICLRFETEVC 1250


>ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
            gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
            sativa Japonica Group]
          Length = 1270

 Score = 1155 bits (2988), Expect = 0.0
 Identities = 565/742 (76%), Positives = 629/742 (84%), Gaps = 24/742 (3%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+ ER +GIVATLRRTNPLQMISD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 529  WCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 588

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA VSS+V  P +D  + CGM KL E+  E +  M K+FLNGDW
Sbjct: 589  STPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDW 648

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG CSD +S   RLRCMRR   IDPQVEIK DKHQ+EVR+F+DAGRILRPLL+V+NL KI
Sbjct: 649  VGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKI 708

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANE---------------- 1736
            R  KG + SF +LM             ED ++AWGI++ F + E                
Sbjct: 709  RRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNV 768

Query: 1735 -----GSSLKYSHCELDPSFLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPS 1571
                 G    Y+HCELD SFLLGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP 
Sbjct: 769  KRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPH 828

Query: 1570 IRVDTLSHQLYYPQKPLFRTVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGF 1391
            IRVDTLSHQLYYPQ+PLF+TV+++C+  +  + GRKD  ARPEY+NGQNAIVAVNVHQGF
Sbjct: 829  IRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGF 888

Query: 1390 NQEDSLVMNKSSLDRGMFRTEHFRSYKAEVENKVL---SKRLKLKEKVDFGKIDSKKGRV 1220
            NQEDS+VMN++SL+RGMFRTEHFR+YKAEVENK     +KRLK+K+K+DFGK+ SK+GRV
Sbjct: 889  NQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRV 948

Query: 1219 DSLDDDGFPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAV 1040
            D+LDDDG PYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQ+V+L+ANDEGKNFAV
Sbjct: 949  DNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAV 1008

Query: 1039 VTLRQVRSPCLGDKFSSMHGQKGVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQ 860
            VTLRQVRSPCLGDKFSSMHGQKGVVGFLE+QENFPFT +GIVPDIVINPHAFPTRQTPGQ
Sbjct: 1009 VTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1068

Query: 859  LLEAALGKGIACRDSTRYATPFSTASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMI 680
            LLEAALGKGIA   + RYATPF+TAS D I DQLH++GFSRWG+E VLNGRTGE M S+I
Sbjct: 1069 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLI 1128

Query: 679  FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA 500
            FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA
Sbjct: 1129 FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA 1188

Query: 499  NLHERLFMLSDFSQMHICQKCHRAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYG 320
            NLHERLFMLSDFSQMH+CQ C R ANVI+RPVPGGKKIRGPYC FC+S ENIVRINVPYG
Sbjct: 1189 NLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYG 1248

Query: 319  AKLLYMELFSMGICLKFETELC 254
            AKLLY ELFSMGICL+FETE+C
Sbjct: 1249 AKLLYQELFSMGICLRFETEVC 1270


>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score = 1155 bits (2988), Expect = 0.0
 Identities = 565/742 (76%), Positives = 629/742 (84%), Gaps = 24/742 (3%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+ ER +GIVATLRRTNPLQMISD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 575  WCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 634

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA VSS+V  P +D  + CGM KL E+  E +  M K+FLNGDW
Sbjct: 635  STPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDW 694

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG CSD +S   RLRCMRR   IDPQVEIK DKHQ+EVR+F+DAGRILRPLL+V+NL KI
Sbjct: 695  VGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKI 754

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANE---------------- 1736
            R  KG + SF +LM             ED ++AWGI++ F + E                
Sbjct: 755  RRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNV 814

Query: 1735 -----GSSLKYSHCELDPSFLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPS 1571
                 G    Y+HCELD SFLLGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP 
Sbjct: 815  KRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPH 874

Query: 1570 IRVDTLSHQLYYPQKPLFRTVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGF 1391
            IRVDTLSHQLYYPQ+PLF+TV+++C+  +  + GRKD  ARPEY+NGQNAIVAVNVHQGF
Sbjct: 875  IRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGF 934

Query: 1390 NQEDSLVMNKSSLDRGMFRTEHFRSYKAEVENKVL---SKRLKLKEKVDFGKIDSKKGRV 1220
            NQEDS+VMN++SL+RGMFRTEHFR+YKAEVENK     +KRLK+K+K+DFGK+ SK+GRV
Sbjct: 935  NQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRV 994

Query: 1219 DSLDDDGFPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAV 1040
            D+LDDDG PYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQ+V+L+ANDEGKNFAV
Sbjct: 995  DNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAV 1054

Query: 1039 VTLRQVRSPCLGDKFSSMHGQKGVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQ 860
            VTLRQVRSPCLGDKFSSMHGQKGVVGFLE+QENFPFT +GIVPDIVINPHAFPTRQTPGQ
Sbjct: 1055 VTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1114

Query: 859  LLEAALGKGIACRDSTRYATPFSTASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMI 680
            LLEAALGKGIA   + RYATPF+TAS D I DQLH++GFSRWG+E VLNGRTGE M S+I
Sbjct: 1115 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLI 1174

Query: 679  FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA 500
            FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA
Sbjct: 1175 FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA 1234

Query: 499  NLHERLFMLSDFSQMHICQKCHRAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYG 320
            NLHERLFMLSDFSQMH+CQ C R ANVI+RPVPGGKKIRGPYC FC+S ENIVRINVPYG
Sbjct: 1235 NLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYG 1294

Query: 319  AKLLYMELFSMGICLKFETELC 254
            AKLLY ELFSMGICL+FETE+C
Sbjct: 1295 AKLLYQELFSMGICLRFETEVC 1316


>emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
          Length = 1343

 Score = 1155 bits (2988), Expect = 0.0
 Identities = 565/742 (76%), Positives = 629/742 (84%), Gaps = 24/742 (3%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+ ER +GIVATLRRTNPLQMISD+RKTRQ+V YAGKAGDARYPNPSYWGKLCF+
Sbjct: 602  WCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 661

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA VSS+V  P +D  + CGM KL E+  E +  M K+FLNGDW
Sbjct: 662  STPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDW 721

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VG CSD +S   RLRCMRR   IDPQVEIK DKHQ+EVR+F+DAGRILRPLL+V+NL KI
Sbjct: 722  VGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKI 781

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANE---------------- 1736
            R  KG + SF +LM             ED ++AWGI++ F + E                
Sbjct: 782  RRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNV 841

Query: 1735 -----GSSLKYSHCELDPSFLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPS 1571
                 G    Y+HCELD SFLLGLSC I PFANHNFARRVLYQ+EKHS QAIG+ST NP 
Sbjct: 842  KRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPH 901

Query: 1570 IRVDTLSHQLYYPQKPLFRTVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGF 1391
            IRVDTLSHQLYYPQ+PLF+TV+++C+  +  + GRKD  ARPEY+NGQNAIVAVNVHQGF
Sbjct: 902  IRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGF 961

Query: 1390 NQEDSLVMNKSSLDRGMFRTEHFRSYKAEVENKVL---SKRLKLKEKVDFGKIDSKKGRV 1220
            NQEDS+VMN++SL+RGMFRTEHFR+YKAEVENK     +KRLK+K+K+DFGK+ SK+GRV
Sbjct: 962  NQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRV 1021

Query: 1219 DSLDDDGFPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAV 1040
            D+LDDDG PYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQ+V+L+ANDEGKNFAV
Sbjct: 1022 DNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAV 1081

Query: 1039 VTLRQVRSPCLGDKFSSMHGQKGVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQ 860
            VTLRQVRSPCLGDKFSSMHGQKGVVGFLE+QENFPFT +GIVPDIVINPHAFPTRQTPGQ
Sbjct: 1082 VTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQ 1141

Query: 859  LLEAALGKGIACRDSTRYATPFSTASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMI 680
            LLEAALGKGIA   + RYATPF+TAS D I DQLH++GFSRWG+E VLNGRTGE M S+I
Sbjct: 1142 LLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLI 1201

Query: 679  FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA 500
            FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA
Sbjct: 1202 FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAA 1261

Query: 499  NLHERLFMLSDFSQMHICQKCHRAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYG 320
            NLHERLFMLSDFSQMH+CQ C R ANVI+RPVPGGKKIRGPYC FC+S ENIVRINVPYG
Sbjct: 1262 NLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYG 1321

Query: 319  AKLLYMELFSMGICLKFETELC 254
            AKLLY ELFSMGICL+FETE+C
Sbjct: 1322 AKLLYQELFSMGICLRFETEVC 1343


>ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1236

 Score = 1125 bits (2911), Expect = 0.0
 Identities = 547/720 (75%), Positives = 618/720 (85%), Gaps = 2/720 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+ ER SG+VATLRRTNPLQM+SD+RK+RQQV YAGKAGDARYPNPSYWGK+CF+
Sbjct: 517  WCHPYKRNERCSGVVATLRRTNPLQMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKMCFM 576

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V+QP +D  + CGM KLDE+    +  M K+FLNG+W
Sbjct: 577  STPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEIPAGQIPKMDKIFLNGNW 636

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQ--KEVRIFTDAGRILRPLLIVKNLK 1874
            VG C+D +S   RLRCMRRG  IDPQVEIK DKHQ   EVR+F+DAGRILRPLL+V+NL 
Sbjct: 637  VGSCTDPASFVMRLRCMRRGNLIDPQVEIKRDKHQIPGEVRVFSDAGRILRPLLVVENLN 696

Query: 1873 KIRELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPS 1694
            KIR+ K G+ SF  LM             ED   AWGI+  F  +      Y+HCELD S
Sbjct: 697  KIRKPKDGSYSFQALMQQEIIEYIGVEEEEDILCAWGIRHLFPGSGEDFSGYTHCELDLS 756

Query: 1693 FLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFR 1514
            FLLGLSCS+ PFANHNFARRVLYQ+EKHS QAIG+ST N   RVDTLSHQLYYPQ+PLF+
Sbjct: 757  FLLGLSCSLIPFANHNFARRVLYQSEKHSQQAIGYSTTNQLTRVDTLSHQLYYPQRPLFK 816

Query: 1513 TVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFR 1334
            TV ++C+  +  ++GR D  ARPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFR
Sbjct: 817  TVTADCIGRSDYTIGRTDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFR 876

Query: 1333 TEHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVI 1154
            TE  RSYKA+VE K  +KRLKLKEKVDFGK+ SK+GRVDSLDDDG PYVGASLQSGDIVI
Sbjct: 877  TELIRSYKADVETKEPAKRLKLKEKVDFGKMQSKRGRVDSLDDDGLPYVGASLQSGDIVI 936

Query: 1153 GKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK 974
            GKVSESGEDHSIKLKHTEKGMVQ+V+L+ANDE KNFAVVTLRQVRSPC+GDKFSSMHGQK
Sbjct: 937  GKVSESGEDHSIKLKHTEKGMVQRVLLSANDEEKNFAVVTLRQVRSPCVGDKFSSMHGQK 996

Query: 973  GVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPF 794
            GV+GFLE+QENFPFTC+GIVPDIVINPHAFPTRQTPGQLLEAALGKGIA   + RYATPF
Sbjct: 997  GVIGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGSAMRYATPF 1056

Query: 793  STASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRN 614
            +TAS++ I++QLH++GFS  G+E VLNG+TGE M S+IFMGP FYQRL HMAEDKVKFRN
Sbjct: 1057 TTASLEVISEQLHKAGFSGGGTESVLNGQTGERMHSLIFMGPNFYQRLTHMAEDKVKFRN 1116

Query: 613  TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCH 434
            TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDF+QMHICQ C 
Sbjct: 1117 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFAQMHICQTCQ 1176

Query: 433  RAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
            RAANV++R +PGGKKIRGPYC FC+S EN VRI VPYGAKLLY ELFSMGICLKF+TE+C
Sbjct: 1177 RAANVVMRAIPGGKKIRGPYCGFCRSSENKVRIAVPYGAKLLYQELFSMGICLKFKTEVC 1236


>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score = 1125 bits (2909), Expect = 0.0
 Identities = 541/720 (75%), Positives = 617/720 (85%), Gaps = 2/720 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W+HPY + ER SGIVATLRRTNPLQM+SD+RK+RQQV YAGK GDARYPNPSYWGK+CF+
Sbjct: 494  WSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDARYPNPSYWGKMCFM 553

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V+QP +D  + CGM KLDE+S + +  M K+FLNGDW
Sbjct: 554  STPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAKEIPKMDKIFLNGDW 613

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQ--KEVRIFTDAGRILRPLLIVKNLK 1874
            +G C+D +S   RLRCMRR   IDPQVEIK DKHQ   EVR+F+DAGRILRPLL+V+NL 
Sbjct: 614  IGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDAGRILRPLLVVENLN 673

Query: 1873 KIRELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPS 1694
            KIR+ K    +F  L+             ED Q AWGI+  F ++      Y+HCELD S
Sbjct: 674  KIRKSKDRPYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSSGEKVSGYTHCELDLS 733

Query: 1693 FLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFR 1514
            FLLGLSC + PFANHNFARRVLYQ+EKHS QAIG+ST NP  RVDT SHQLYYPQ+PLF+
Sbjct: 734  FLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQLYYPQRPLFK 793

Query: 1513 TVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFR 1334
            TV ++C+  +  ++GRKD  ARPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFR
Sbjct: 794  TVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFR 853

Query: 1333 TEHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVI 1154
            TEH RSYKAEVE K  +KRLKLKEKVDFGK+ SK+GRVD+LDDDG PYVGASLQSGDIVI
Sbjct: 854  TEHIRSYKAEVETKEPTKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVI 913

Query: 1153 GKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK 974
            GKVSESGEDHSIK+KHTEKGM Q+V+L+ANDEGKNFAVVTLRQVRSPC+GDKFSSMHGQK
Sbjct: 914  GKVSESGEDHSIKMKHTEKGMAQRVLLSANDEGKNFAVVTLRQVRSPCVGDKFSSMHGQK 973

Query: 973  GVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPF 794
            GV+GFLE+QENFPFTC+GIVPD+VINPHAFPTRQTPGQLLEAALGKGIA   + RYATPF
Sbjct: 974  GVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIALGGAMRYATPF 1033

Query: 793  STASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRN 614
            + AS++ I++QLH++GFSR G+E V+NGRTGE M S+IFMGP FYQRL HMAEDKVKFRN
Sbjct: 1034 TPASLEVISEQLHKAGFSRSGAESVINGRTGERMHSLIFMGPNFYQRLTHMAEDKVKFRN 1093

Query: 613  TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCH 434
            TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHIC+ C 
Sbjct: 1094 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICRTCE 1153

Query: 433  RAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
            R ANV++R VPGGK+IRGPYC FC+S EN VRI VPYGAKLLY ELF MGICLKF+TE+C
Sbjct: 1154 RVANVVMRSVPGGKRIRGPYCGFCRSSENTVRIAVPYGAKLLYQELFCMGICLKFQTEIC 1213


>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score = 1125 bits (2909), Expect = 0.0
 Identities = 542/720 (75%), Positives = 617/720 (85%), Gaps = 2/720 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W+HPY + ER SGIVATLRRTNPLQM+SD+RK+RQQV YAGK GDARYPNPSYWGK+CF+
Sbjct: 494  WSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDARYPNPSYWGKMCFM 553

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V+QP +D  + CGM KLDE+S + +  M K+FLNGDW
Sbjct: 554  STPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAKEIPKMDKIFLNGDW 613

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQ--KEVRIFTDAGRILRPLLIVKNLK 1874
            +G C+D +S   RLRCMRR   IDPQVEIK DKHQ   EVR+F+DAGRILRPLL+V+NL 
Sbjct: 614  IGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDAGRILRPLLVVENLN 673

Query: 1873 KIRELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPS 1694
            KIR+ K    +F  L+             ED Q AWGI+  F ++      Y+HCELD S
Sbjct: 674  KIRKSKDRHYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSSGEKVSGYTHCELDLS 733

Query: 1693 FLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFR 1514
            FLLGLSC + PFANHNFARRVLYQ+EKHS QAIG+ST NP  RVDT SHQLYYPQ+PLF+
Sbjct: 734  FLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQLYYPQRPLFK 793

Query: 1513 TVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFR 1334
            TV ++C+  +  ++GRKD  ARPEY+NGQNAIVAVNVHQGFNQEDSLVMN++SL+RGMFR
Sbjct: 794  TVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFR 853

Query: 1333 TEHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVI 1154
            TEH RSYKAEVE K   KRLKLKEKVDFGK+ SK+GRVD+LDDDG PYVGASLQSGDIVI
Sbjct: 854  TEHIRSYKAEVETKEPIKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVI 913

Query: 1153 GKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK 974
            GKVSESGEDHSIK+KHTEKGMVQ+V+L+ANDEGKNFAVVTLRQVRSPC+GDKFSSMHGQK
Sbjct: 914  GKVSESGEDHSIKMKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCVGDKFSSMHGQK 973

Query: 973  GVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPF 794
            GV+GFLE+QENFPFTC+GIVPD+VINPHAFPTRQTPGQLLEAALGKGIA   + RYATPF
Sbjct: 974  GVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIALGGAMRYATPF 1033

Query: 793  STASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRN 614
            + AS++ I++QLH++GFSR G+E V+NGRTGE M S+IFMGP FYQRL HMAEDKVKFRN
Sbjct: 1034 TPASLEVISEQLHKAGFSRGGAESVINGRTGERMHSLIFMGPNFYQRLTHMAEDKVKFRN 1093

Query: 613  TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCH 434
            TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHIC+ C 
Sbjct: 1094 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICRTCE 1153

Query: 433  RAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
            R ANV++R VPGGK+IRGPYC FC+S EN VRI VPYGAKLLY ELF MGICLKF+TE+C
Sbjct: 1154 RVANVVMRGVPGGKRIRGPYCGFCRSSENTVRIAVPYGAKLLYQELFCMGICLKFQTEIC 1213


>gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticum urartu]
          Length = 1269

 Score = 1113 bits (2879), Expect = 0.0
 Identities = 540/718 (75%), Positives = 614/718 (85%), Gaps = 2/718 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPYK+ ER SGIVATLRRTNPLQM+SD+RK+RQQV YAGKAGDARYPNPSYWGK+CF+
Sbjct: 516  WCHPYKRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKMCFM 575

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V QP +D  + CGM KLDE+  + +  M K+FLNGDW
Sbjct: 576  STPDGENCGLVKNLAVTAIVSSRVAQPLIDRFVSCGMNKLDEIPAKQIPKMDKIFLNGDW 635

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQK--EVRIFTDAGRILRPLLIVKNLK 1874
            VG C+D +S   RLRCMRRG  IDPQVEIK DKHQ   EVR+F+DAGR+LRPLL+V+NL 
Sbjct: 636  VGSCADPASFVMRLRCMRRGGLIDPQVEIKRDKHQSPGEVRVFSDAGRLLRPLLVVENLN 695

Query: 1873 KIRELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPS 1694
            KI + KG   SF  LM             ED Q AWGI+  F ++      Y+HCELD S
Sbjct: 696  KITKRKGSPYSFQALMQQEIIEFIGVEEEEDIQCAWGIRHLFQSSGDEVSGYTHCELDLS 755

Query: 1693 FLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFR 1514
            FLLGLSCS+ PFANHNFARRVLYQAEKHS QAIG+ST NP  RVDTLSHQLYYPQ+PLF+
Sbjct: 756  FLLGLSCSLIPFANHNFARRVLYQAEKHSQQAIGYSTTNPLTRVDTLSHQLYYPQRPLFK 815

Query: 1513 TVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFR 1334
            TV ++C+  +  + GRKD  ARPEY+NGQNAIVAVN+HQGFNQEDSLVMN++SL+RGMFR
Sbjct: 816  TVSADCIGRSDYTFGRKDDFARPEYFNGQNAIVAVNIHQGFNQEDSLVMNRASLERGMFR 875

Query: 1333 TEHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVI 1154
            TE  RSYKAEVE K  SKRLK+KEKV+FGK++SK+GRVD+LDDDG P+VG+SLQ GDI+I
Sbjct: 876  TELMRSYKAEVETKGPSKRLKMKEKVNFGKMESKRGRVDNLDDDGLPFVGSSLQIGDIII 935

Query: 1153 GKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK 974
            GKVSESGEDHSIKLKHTEKGMVQ+V+L+ANDEGK+FAVV+LRQVRSPC+GDKFSSMHGQK
Sbjct: 936  GKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKHFAVVSLRQVRSPCVGDKFSSMHGQK 995

Query: 973  GVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPF 794
            GVVGFLE+QENFPFTC+GIVPDIVINPHAFPTRQTPGQLLEAALGKGIA     +YATPF
Sbjct: 996  GVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGKIKYATPF 1055

Query: 793  STASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRN 614
            +TA+V+ I++QLH+ GFSR G+E VLNG+TG+ M  +IF GP FYQRLIHMAEDKVKFRN
Sbjct: 1056 TTATVEVISEQLHKLGFSRGGAESVLNGQTGKRMQQLIFAGPNFYQRLIHMAEDKVKFRN 1115

Query: 613  TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCH 434
            TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLF LSDFS+M ICQ C 
Sbjct: 1116 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFTLSDFSEMRICQTCE 1175

Query: 433  RAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETE 260
            R ANVI+RPV GG+KIRGPYC FC+S ENIV+I VPYGAKLLY ELFSMGICLKF+TE
Sbjct: 1176 RGANVIMRPVSGGRKIRGPYCGFCKSSENIVKIAVPYGAKLLYQELFSMGICLKFQTE 1233


>gb|EMT10124.1| DNA-directed RNA polymerase II subunit RPB2 [Aegilops tauschii]
          Length = 1324

 Score = 1082 bits (2799), Expect = 0.0
 Identities = 534/739 (72%), Positives = 609/739 (82%), Gaps = 22/739 (2%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HPY++ ER SGIVATLRRTNPLQM+SD+RK+RQQV YAGKAGDARYPNPSYWGK+CF+
Sbjct: 554  WCHPYRRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKMCFM 613

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLAVTA+VSS+V QP +D  + CGM KLDE+  + +  M K+FLNGDW
Sbjct: 614  STPDGENCGLVKNLAVTAIVSSRVAQPLIDRFVSCGMNKLDEIPAKKIPQMDKIFLNGDW 673

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQK--EVRIFTDAGRILRPLLIVKNLK 1874
            VG C+D +S   RLRCMRRG  IDPQVEIK DKHQ   EVR+F+DAGR+LRPLL+V+NL 
Sbjct: 674  VGSCADPASFVMRLRCMRRGGLIDPQVEIKRDKHQSPGEVRVFSDAGRLLRPLLVVENLN 733

Query: 1873 KIRELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPS 1694
            KI + KG   SF  LM             ED Q AWGI+  F ++      Y+HCELD S
Sbjct: 734  KITKRKGSPYSFQALMQQEIIEFIGVEEEEDIQCAWGIRHLFQSSGEEVSGYTHCELDLS 793

Query: 1693 FLLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFR 1514
            FLLGLSC + PFANHNFARRVLYQAEKHS QAIG+ST NP  RVDTLSHQLYYPQ+PLF+
Sbjct: 794  FLLGLSCGLIPFANHNFARRVLYQAEKHSQQAIGYSTTNPLTRVDTLSHQLYYPQRPLFK 853

Query: 1513 TVVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFR 1334
            TV ++C+  +  + GRKD  ARPEY+NGQNAIVAVN+HQGFNQEDSLVMN++SL+RGMFR
Sbjct: 854  TVSADCIGRSDYTFGRKDDFARPEYFNGQNAIVAVNIHQGFNQEDSLVMNRASLERGMFR 913

Query: 1333 TEHFRSYKAEVENKVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVI 1154
            TE  RSYKAEVE K  SKRLK+KEKV+FGK++SK+GRVD+LDDDG P+VG+SLQ GDI+I
Sbjct: 914  TELMRSYKAEVETKGPSKRLKMKEKVNFGKMESKRGRVDNLDDDGLPFVGSSLQIGDIII 973

Query: 1153 GKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQ----------------- 1025
            GKVSESGEDHSIKLKHTEKGMVQ+V+L+ANDEGK+FAVV+LRQ                 
Sbjct: 974  GKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKHFAVVSLRQVHLVSFFENLRCTYYYF 1033

Query: 1024 ---VRSPCLGDKFSSMHGQKGVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLL 854
               VRSPC+GDKFSSMHGQKGVVGFLE+QENFPFTC+GIVPDIVINPHAFPTRQTPGQLL
Sbjct: 1034 RLKVRSPCVGDKFSSMHGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLL 1093

Query: 853  EAALGKGIACRDSTRYATPFSTASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFM 674
            EAALGKGIA     RYATPF+TA+V+ I++QLH+ GFSR G+E VLNG+TG+ M  +IF 
Sbjct: 1094 EAALGKGIALGGKIRYATPFTTATVEVISEQLHKLGFSRGGAESVLNGQTGKRMQQLIFA 1153

Query: 673  GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANL 494
            GP FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANL
Sbjct: 1154 GPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANL 1213

Query: 493  HERLFMLSDFSQMHICQKCHRAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAK 314
            HERL  LSDFS     + C R ANVI+RPV GG+KIRGPYC FC+S ENIV+I VPYGAK
Sbjct: 1214 HERLLTLSDFS-----ETCERGANVIMRPVSGGRKIRGPYCGFCKSSENIVKIAVPYGAK 1268

Query: 313  LLYMELFSMGICLKFETEL 257
            LLY ELFSMGICLKF+TE+
Sbjct: 1269 LLYQELFSMGICLKFQTEV 1287


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1063 bits (2748), Expect = 0.0
 Identities = 512/719 (71%), Positives = 600/719 (83%), Gaps = 1/719 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W+HP+K+ ER SG+VATLRRTNPLQM +DMRKTRQQV Y GK GDARYP+PS+WGK+CFL
Sbjct: 480  WSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFL 539

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLA+T +VS++VL P VD L +CGM+KL + +   +    KVFL+GDW
Sbjct: 540  STPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDW 599

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VGVC D  S    LR  RR K++  QVEIK D+ Q EVRIF+DAGRILRPLL+V+NLKK+
Sbjct: 600  VGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKV 659

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGSSLKYSHCELDPSFL 1688
            +  KG   +F  L+             EDC TAWGIK     ++   +KY+HCELD SFL
Sbjct: 660  KTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFL 719

Query: 1687 LGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRTV 1508
            LGLSC I P+ANH+ ARRVLYQ+EKHS QAIGFST NP+IRVDTLSHQLYYPQ+PLFRT+
Sbjct: 720  LGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTM 779

Query: 1507 VSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRTE 1328
            +S+CL     S G K  + RPEY+NGQ AIVAVNVH G+NQEDSLVMN++SL+RGMFR+E
Sbjct: 780  ISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 839

Query: 1327 HFRSYKAEVEN-KVLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVIG 1151
            H RSYK+EV+N + L K+ K ++ V FGK+ SK GRVDSLDDDGFP++GA+LQ+GDIVIG
Sbjct: 840  HIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIG 899

Query: 1150 KVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 971
            + +ESG DHSIKLKHTE+GMVQKVV++AND+GKNFAVV+LRQVR+PCLGDKFSSMHGQKG
Sbjct: 900  RCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKG 959

Query: 970  VVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPFS 791
            V+GFLE+QENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAALGKGIAC    R+ATPFS
Sbjct: 960  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFS 1019

Query: 790  TASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRNT 611
            T SVD IADQLHR+GFSRWG ERV NGRTGEM+ S+IFMGPTFYQRLIHMAEDKVKFRNT
Sbjct: 1020 TLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNT 1079

Query: 610  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCHR 431
            GPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGAAANLHERLF LSD + MHIC++C  
Sbjct: 1080 GPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKN 1139

Query: 430  AANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
             +NVI R V GG+K+RGPYC +C+S E IV++NVPYGAKLL  ELFSMGI LKFET+LC
Sbjct: 1140 ISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC 1198


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1055 bits (2727), Expect = 0.0
 Identities = 514/720 (71%), Positives = 593/720 (82%), Gaps = 2/720 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W+HPYK+ ER SG+VA L R NPLQ + D+RKTR  V Y GK GDAR+P+PS+WG++CFL
Sbjct: 484  WSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFL 543

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLA T +VS  +L+P +D L+  GM+K+ E S   +    KVFLNG+W
Sbjct: 544  STPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPEDSHSDLDEKDKVFLNGEW 603

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VGVC D       LR +RR K++  QVEIK D+ Q+EVRIF+DAGRILRPLL+V+NL KI
Sbjct: 604  VGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKI 663

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEGS-SLKYSHCELDPSF 1691
               KGG C+F  L+             EDC TAWGIK   +  +G  SLKY+HCELD SF
Sbjct: 664  EAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSF 723

Query: 1690 LLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRT 1511
            LLGLSC I PFANH+ ARRVLYQA+KHS QAIGF T NP+IRVDTLSHQLYYPQ+PLFRT
Sbjct: 724  LLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRT 783

Query: 1510 VVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRT 1331
            V S+CL     + G    + +PE YNGQNAIVAVNVH G+NQEDSLVMN++SL+RGMFR+
Sbjct: 784  VTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 843

Query: 1330 EHFRSYKAEVENK-VLSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVI 1154
            EH RSYKA+V+NK +L KR K  + V+FGKI SK GRVDSLDDDGFP++GA+LQSGDIVI
Sbjct: 844  EHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVI 903

Query: 1153 GKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK 974
            G+ +ESG DHSIKLKHTE+GMVQKVVL++NDEGKNFAVV+LRQVRSPCLGDKFSSMHGQK
Sbjct: 904  GRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQK 963

Query: 973  GVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPF 794
            GV+GFLE+QENFPFT +GIVPDIVINPH+FP+RQTPGQLLEAALGKGIAC  S +YATPF
Sbjct: 964  GVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPF 1023

Query: 793  STASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRN 614
            ST SV+ I +QLHR+GFSRWG+ERV NGRTGEM+ S+IFMGPTFYQRLIHMAEDKVKFRN
Sbjct: 1024 STLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRN 1083

Query: 613  TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCH 434
            TGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGA+ANLHERLF LSD SQMHICQKC 
Sbjct: 1084 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCK 1143

Query: 433  RAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETELC 254
              ANVI R VPGG+KIRGPYC  C+S + IV++NVPYGAKLL  ELFSMGI LKFET LC
Sbjct: 1144 NVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFETRLC 1203


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1054 bits (2726), Expect = 0.0
 Identities = 516/721 (71%), Positives = 596/721 (82%), Gaps = 3/721 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W HP+K+ ER SG+VAT+ R NPLQ + DMRKTRQQV Y GK GDARYP+PS+WGK+CFL
Sbjct: 484  WCHPFKRMERMSGVVATVGRANPLQTMVDMRKTRQQVQYTGKVGDARYPHPSHWGKVCFL 543

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLA T +VS+ VL+  +  L+ CGM+KL + +  S+R   KVFLNGDW
Sbjct: 544  STPDGENCGLVKNLATTGLVSTNVLESLIPQLLTCGMEKLVDDTFTSLRGKDKVFLNGDW 603

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VGVC D  S    LR MRR K++  QVEIK D HQ EVRIF+DAGRILRPLL+V+NL K+
Sbjct: 604  VGVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVHQGEVRIFSDAGRILRPLLVVENLNKV 663

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEG-SSLKYSHCELDPSF 1691
            +  KGG  SF Y +             EDC TAWGIK  F  ++G S+ K++HCELD SF
Sbjct: 664  KASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAWGIKYLFMEDKGKSATKFTHCELDMSF 723

Query: 1690 LLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRT 1511
            LLGLSC I P+ANH+ ARRVLYQA+KHS QAIGFST NP++RVDTLSHQL+YPQ+PLF+T
Sbjct: 724  LLGLSCGIIPYANHDHARRVLYQAQKHSQQAIGFSTTNPNLRVDTLSHQLHYPQRPLFQT 783

Query: 1510 VVSECLFSTSSSVGRKDTIA-RPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFR 1334
            + S+CL       GR + I  +PEYYNGQNAIVAVNVH GFNQEDS+VMN++SL+RGMFR
Sbjct: 784  MTSDCL----GKPGRHNRIVPKPEYYNGQNAIVAVNVHLGFNQEDSIVMNRASLERGMFR 839

Query: 1333 TEHFRSYKAEVENKV-LSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIV 1157
            +EH RSYKAEV+NK  L KR K  + V+FGK+ SK GRVDSLDDDGFPYVGA+LQSGDI+
Sbjct: 840  SEHIRSYKAEVDNKESLDKRRKPDDCVNFGKMQSKFGRVDSLDDDGFPYVGANLQSGDII 899

Query: 1156 IGKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQ 977
            IG+ SESG DHSIKLKHTE+GMVQKV+L++ND+GKNFAVV+LRQVRSPCLGDKFSSMHGQ
Sbjct: 900  IGRCSESGADHSIKLKHTERGMVQKVLLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQ 959

Query: 976  KGVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATP 797
            KGV+GFLE+QENFPFT +G+VPDIVINPHAFP+RQTPGQLLEAALGKGIAC  S RYATP
Sbjct: 960  KGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATP 1019

Query: 796  FSTASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFR 617
            FST SVDDI DQLH +GFSRWG+ERV NG TG M+ S+IFMGPTFYQRLIHM+EDKVKFR
Sbjct: 1020 FSTLSVDDITDQLHSAGFSRWGNERVYNGATGAMVRSLIFMGPTFYQRLIHMSEDKVKFR 1079

Query: 616  NTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKC 437
            NTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGA+ANLHERLF LSD SQMH+CQKC
Sbjct: 1080 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKC 1139

Query: 436  HRAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETEL 257
               A VILR V GG+KIRGP+C  C S +++VR+NVPYGAKLL  ELFSMGI LKFET  
Sbjct: 1140 KNVAYVILRTVAGGRKIRGPHCRICDSADDLVRVNVPYGAKLLCQELFSMGISLKFETRF 1199

Query: 256  C 254
            C
Sbjct: 1200 C 1200


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1047 bits (2708), Expect = 0.0
 Identities = 507/719 (70%), Positives = 600/719 (83%), Gaps = 2/719 (0%)
 Frame = -2

Query: 2407 WTHPYKKAERSSGIVATLRRTNPLQMISDMRKTRQQVLYAGKAGDARYPNPSYWGKLCFL 2228
            W+HPYKK ER SG+VATLRRTNPLQ I+DMRKTRQQV Y GK GDARYP+PS+WGK+CFL
Sbjct: 300  WSHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFL 359

Query: 2227 STPDGENCGLVKNLAVTAVVSSKVLQPSVDNLMECGMKKLDEVSLESMRNMGKVFLNGDW 2048
            STPDGENCGLVKNLA+T +VS+ + +  +D L++ GM+KL + +   +    KVFL+G+W
Sbjct: 360  STPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNW 419

Query: 2047 VGVCSDMSSIADRLRCMRRGKQIDPQVEIKIDKHQKEVRIFTDAGRILRPLLIVKNLKKI 1868
            VGVC D  S    LR  RR K++  QVEIK D+  +EVR+F+DAGRILRPLL+V+NL KI
Sbjct: 420  VGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKI 479

Query: 1867 RELKGGACSFSYLMXXXXXXXXXXXXXEDCQTAWGIKSFFAANEG-SSLKYSHCELDPSF 1691
            +  KGG  SF  L+             EDC+TAWGI   F  NE  +++KY+HCELD SF
Sbjct: 480  KASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSF 539

Query: 1690 LLGLSCSITPFANHNFARRVLYQAEKHSHQAIGFSTVNPSIRVDTLSHQLYYPQKPLFRT 1511
            LLGLS +I PFANH+ ARRVLYQ+EKHS QA+GF+T NP+IRVDT +HQLYYPQ+PLFRT
Sbjct: 540  LLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRT 599

Query: 1510 VVSECLFSTSSSVGRKDTIARPEYYNGQNAIVAVNVHQGFNQEDSLVMNKSSLDRGMFRT 1331
            +VS+CL      +G    + R EY+NGQ AIVAVNVH G+NQEDSLVMN++SL+RGMFR+
Sbjct: 600  MVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 659

Query: 1330 EHFRSYKAEVENKV-LSKRLKLKEKVDFGKIDSKKGRVDSLDDDGFPYVGASLQSGDIVI 1154
            EH RSYKA+V+NK  + K+ K ++ V+FGK+ SK GRVDSLDDDGFP++GA+LQ+GDIV+
Sbjct: 660  EHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVV 719

Query: 1153 GKVSESGEDHSIKLKHTEKGMVQKVVLAANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK 974
            G+ +ESG DHSIKLKHTE+GMVQKVVL+ANDEGKNFAVV+LRQVR+PCLGDKFSSMHGQK
Sbjct: 720  GRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK 779

Query: 973  GVVGFLETQENFPFTCEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACRDSTRYATPF 794
            GV+GFLE+QENFPFT +GIVPDIV+NPHAFP+RQTPGQLLEAALGKGIAC    +YATPF
Sbjct: 780  GVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPF 839

Query: 793  STASVDDIADQLHRSGFSRWGSERVLNGRTGEMMSSMIFMGPTFYQRLIHMAEDKVKFRN 614
            ST SVD + DQLHR+GFSRWGSERV NGRTGEM+ S++FMGPTFYQRL HM+EDKVKFRN
Sbjct: 840  STLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFRN 899

Query: 613  TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCH 434
            TGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGAAANLHERLF LSD SQMHIC+KC+
Sbjct: 900  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN 959

Query: 433  RAANVILRPVPGGKKIRGPYCNFCQSGENIVRINVPYGAKLLYMELFSMGICLKFETEL 257
              ANVI R VPGG+KIRGPYC FC+S E IVR+NVPYGAKLL  ELFSMGI +KF+TEL
Sbjct: 960  NIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELFSMGITMKFDTEL 1018