BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00020349
         (1143 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   379   e-103
ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform ...   379   e-103
ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform ...   379   e-103
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   369   2e-99
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   368   2e-99
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi...   367   5e-99
ref|XP_006857525.1| hypothetical protein AMTR_s00061p00026580, p...   357   6e-96
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   355   1e-95
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A...   354   3e-95
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   353   7e-95
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr...   352   1e-94
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       351   3e-94
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g...   351   4e-94
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]             351   4e-94
gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]                349   1e-93
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 349   1e-93
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               349   1e-93
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ...   349   1e-93
ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [A...   348   2e-93
dbj|BAJ84827.1| predicted protein [Hordeum vulgare subsp. vulgare]    348   3e-93

>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  379 bits (974), Expect = e-103
 Identities = 212/404 (52%), Positives = 250/404 (61%), Gaps = 25/404 (6%)
 Frame = -3

Query: 1138 KHENFDDDKPLSFKNSTSGAVNRSAS-----SHAAKAPQSQKPS---------LPHSMKP 1001
            K ++ DDDKPLS K ++S   +  AS        AK  Q  + S         LP +  P
Sbjct: 147  KADDSDDDKPLSLKINSSKMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASRLPTNAAP 206

Query: 1000 XXXXXXXXXXXXEKPLLSRFQSKAVNG-----SGKKDTNSETSAPRVGEKRPHSDTNPAE 836
                        EKPL +RF   + +G     S  K  N++++ PR   KRP  ++N   
Sbjct: 207  KSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPLDNSNQT- 265

Query: 835  SSSIKKAKLSGTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIKSPSSNCGSIN-KNILH 659
            S ++KKAK S  S S   K+E+         D+ND+ P+AQR+K   S+ G  + KN++ 
Sbjct: 266  SLALKKAKPSNVSASASVKREIKA-------DDNDNTPLAQRLKIGESSKGKPSAKNVVK 318

Query: 658  KTTXXXXXXXXXXXXXXXXXXXXXXXKT-----PPGSGGGQKWTTLVHNGVIFPPSYKPH 494
            K+                         +     PPGSGGG+KWTTL HNGVIFPP YKPH
Sbjct: 319  KSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPH 378

Query: 493  GIKMLYKGQPVNLTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFE 314
            G+KMLY GQPV+LTPEQEEVATMFAVMKDTDYA K  FIENF  DWR +LGKNH+IKKFE
Sbjct: 379  GVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNHVIKKFE 438

Query: 313  DCDFTPIYEWHLEEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPP 134
             CDFTPIYEWHL EKEKKKQMT                KYMWA+VDGVKEKVGNFRVEPP
Sbjct: 439  LCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPP 498

Query: 133  GLFRGRGEHPKMGKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            GLFRGRGEHPKMGKLK RIKP DITINIG+DAP+PECPIPGERW
Sbjct: 499  GLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPECPIPGERW 542


>ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform X2 [Setaria italica]
          Length = 930

 Score =  379 bits (974), Expect = e-103
 Identities = 212/404 (52%), Positives = 250/404 (61%), Gaps = 25/404 (6%)
 Frame = -3

Query: 1138 KHENFDDDKPLSFKNSTSGAVNRSAS-----SHAAKAPQSQKPS---------LPHSMKP 1001
            K ++ DDDKPLS K ++S   +  AS        AK  Q  + S         LP +  P
Sbjct: 147  KADDSDDDKPLSLKINSSKMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASRLPTNAAP 206

Query: 1000 XXXXXXXXXXXXEKPLLSRFQSKAVNG-----SGKKDTNSETSAPRVGEKRPHSDTNPAE 836
                        EKPL +RF   + +G     S  K  N++++ PR   KRP  ++N   
Sbjct: 207  KSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPLDNSNQT- 265

Query: 835  SSSIKKAKLSGTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIKSPSSNCGSIN-KNILH 659
            S ++KKAK S  S S   K+E+         D+ND+ P+AQR+K   S+ G  + KN++ 
Sbjct: 266  SLALKKAKPSNVSASASVKREIKA-------DDNDNTPLAQRLKIGESSKGKPSAKNVVK 318

Query: 658  KTTXXXXXXXXXXXXXXXXXXXXXXXKT-----PPGSGGGQKWTTLVHNGVIFPPSYKPH 494
            K+                         +     PPGSGGG+KWTTL HNGVIFPP YKPH
Sbjct: 319  KSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPH 378

Query: 493  GIKMLYKGQPVNLTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFE 314
            G+KMLY GQPV+LTPEQEEVATMFAVMKDTDYA K  FIENF  DWR +LGKNH+IKKFE
Sbjct: 379  GVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNHVIKKFE 438

Query: 313  DCDFTPIYEWHLEEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPP 134
             CDFTPIYEWHL EKEKKKQMT                KYMWA+VDGVKEKVGNFRVEPP
Sbjct: 439  LCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPP 498

Query: 133  GLFRGRGEHPKMGKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            GLFRGRGEHPKMGKLK RIKP DITINIG+DAP+PECPIPGERW
Sbjct: 499  GLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPECPIPGERW 542


>ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Setaria italica]
          Length = 932

 Score =  379 bits (974), Expect = e-103
 Identities = 212/404 (52%), Positives = 250/404 (61%), Gaps = 25/404 (6%)
 Frame = -3

Query: 1138 KHENFDDDKPLSFKNSTSGAVNRSAS-----SHAAKAPQSQKPS---------LPHSMKP 1001
            K ++ DDDKPLS K ++S   +  AS        AK  Q  + S         LP +  P
Sbjct: 147  KADDSDDDKPLSLKINSSKMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASRLPTNAAP 206

Query: 1000 XXXXXXXXXXXXEKPLLSRFQSKAVNG-----SGKKDTNSETSAPRVGEKRPHSDTNPAE 836
                        EKPL +RF   + +G     S  K  N++++ PR   KRP  ++N   
Sbjct: 207  KSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPLDNSNQT- 265

Query: 835  SSSIKKAKLSGTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIKSPSSNCGSIN-KNILH 659
            S ++KKAK S  S S   K+E+         D+ND+ P+AQR+K   S+ G  + KN++ 
Sbjct: 266  SLALKKAKPSNVSASASVKREIKA-------DDNDNTPLAQRLKIGESSKGKPSAKNVVK 318

Query: 658  KTTXXXXXXXXXXXXXXXXXXXXXXXKT-----PPGSGGGQKWTTLVHNGVIFPPSYKPH 494
            K+                         +     PPGSGGG+KWTTL HNGVIFPP YKPH
Sbjct: 319  KSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPH 378

Query: 493  GIKMLYKGQPVNLTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFE 314
            G+KMLY GQPV+LTPEQEEVATMFAVMKDTDYA K  FIENF  DWR +LGKNH+IKKFE
Sbjct: 379  GVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNHVIKKFE 438

Query: 313  DCDFTPIYEWHLEEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPP 134
             CDFTPIYEWHL EKEKKKQMT                KYMWA+VDGVKEKVGNFRVEPP
Sbjct: 439  LCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPP 498

Query: 133  GLFRGRGEHPKMGKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            GLFRGRGEHPKMGKLK RIKP DITINIG+DAP+PECPIPGERW
Sbjct: 499  GLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPECPIPGERW 542


>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
            gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
            [Oryza sativa Japonica Group]
            gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
            Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
            protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  369 bits (946), Expect = 2e-99
 Identities = 205/384 (53%), Positives = 242/384 (63%), Gaps = 7/384 (1%)
 Frame = -3

Query: 1132 ENFDDDKPLSFKNSTSGAVNRSASSHAAKAPQSQKPSLPHSMKPXXXXXXXXXXXXEKPL 953
            ++ +DDKPL+ +  T+ A+ R  +   +   + +KP      K             +K L
Sbjct: 186  DDSEDDKPLASRLPTNAALKRGGN--VSDDSEDEKPLAARFSKVTGNASASISSSKDKVL 243

Query: 952  LSRFQSKAVNGSGKKDTNSETSAPRVGEKRPHSDTNPAESSSIKKAKLSGTSVSVKDKQE 773
             +  ++     S  K +N++ S  R   KRP  D N   SS++KKA+ S  S S      
Sbjct: 244  SASIKAS----SSSKMSNNDASTSRNSIKRP-IDNNNQTSSALKKARPSDVSASA----- 293

Query: 772  VSTKKEGKEDDNNDHIPIAQRIK-SPSSNCGSINKNILHKTTXXXXXXXXXXXXXXXXXX 596
             S K+E K DDN D++P++QR+K   SS      KNI+ K+                   
Sbjct: 294  -SVKREPKADDN-DNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKMKTKK 351

Query: 595  XXXXXK------TPPGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPEQEEV 434
                 +       PPGSGGGQKWTTLVH+GVIFPP YKPHG+KMLY GQPV+LTPEQEEV
Sbjct: 352  TMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEV 411

Query: 433  ATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKEKKKQ 254
            ATMFAVMKDTDYA K+ FI+NF  DWR ILGKNH+IKKFE CDFTPIYEWHL EKEKKKQ
Sbjct: 412  ATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQ 471

Query: 253  MTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKNRIK 74
            MT+               KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RIK
Sbjct: 472  MTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIK 531

Query: 73   PRDITINIGKDAPIPECPIPGERW 2
            P DITINIGK APIPECPIPGE W
Sbjct: 532  PSDITINIGKGAPIPECPIPGESW 555


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  368 bits (945), Expect = 2e-99
 Identities = 217/413 (52%), Positives = 250/413 (60%), Gaps = 36/413 (8%)
 Frame = -3

Query: 1132 ENFDDDKPLSFK-NSTSGAVNRSASSHAAKAP----------QSQKP---SLPHSMKPXX 995
            ++ DD+KPLS K NST    N +  +   K            + +KP    LP       
Sbjct: 146  DDSDDNKPLSLKINSTKTPSNSTNKASVLKVTPKIVQPADDSEDEKPLARRLPAKTTLKS 205

Query: 994  XXXXXXXXXXEKPLLSRFQ----SKAVNGSGKKD---------------TNSETSAPRVG 872
                      EKPL +RF     S + + S  KD               +N++T+  R  
Sbjct: 206  GANASDDSEDEKPLAARFSKVTGSASASISSSKDKVQSANLKPSSSSKVSNNDTNTSRNS 265

Query: 871  EKRPHSDTNPAESSSIKKAKLSGTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIK-SPS 695
             KRP  D N    S++KKA+ S  SVS       S K+E K DDN D+IP++QR+K   S
Sbjct: 266  IKRP-IDNNNQSISALKKARPSDVSVSA------SVKRESKADDN-DNIPLSQRLKMGES 317

Query: 694  SNCGSINKNILHK--TTXXXXXXXXXXXXXXXXXXXXXXXKTPPGSGGGQKWTTLVHNGV 521
            S      KNI+ K  ++                       K PPGSGGGQKWTTLVHNGV
Sbjct: 318  SKSKPPAKNIVKKNPSSFKKDSKKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHNGV 377

Query: 520  IFPPSYKPHGIKMLYKGQPVNLTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILG 341
            IFPP YKPHG+KMLY GQPV+LTPEQEEVATMF+VMKDTDYA K+ FI+NF  DWR ILG
Sbjct: 378  IFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFSVMKDTDYASKQTFIDNFFTDWRKILG 437

Query: 340  KNHIIKKFEDCDFTPIYEWHLEEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEK 161
            KNHIIKKFE CDFTPIYEWHL EKEKKKQMT+               KYMWA+VDGVKEK
Sbjct: 438  KNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKAVKEEKLKQEEKYMWAVVDGVKEK 497

Query: 160  VGNFRVEPPGLFRGRGEHPKMGKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            VGNFRVEPPGLFRGRGEHPKMGKLK RI+P DITINIGK APIPECPIPGE W
Sbjct: 498  VGNFRVEPPGLFRGRGEHPKMGKLKRRIQPSDITINIGKGAPIPECPIPGESW 550


>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
          Length = 916

 Score =  367 bits (942), Expect = 5e-99
 Identities = 204/384 (53%), Positives = 242/384 (63%), Gaps = 7/384 (1%)
 Frame = -3

Query: 1132 ENFDDDKPLSFKNSTSGAVNRSASSHAAKAPQSQKPSLPHSMKPXXXXXXXXXXXXEKPL 953
            ++ +DDKPL+ +  T+ A+ R  +   +   + +KP      K             +K L
Sbjct: 186  DDSEDDKPLASRLPTNAALKRGGN--VSDDSEDEKPLAARFSKVTGNASASISSSKDKVL 243

Query: 952  LSRFQSKAVNGSGKKDTNSETSAPRVGEKRPHSDTNPAESSSIKKAKLSGTSVSVKDKQE 773
             +  ++     S  K +N++ S  R   KRP  D N   SS++KKA+ S  S S      
Sbjct: 244  SASIKAS----SSSKMSNNDASTSRNSIKRP-IDNNNQTSSALKKARPSDVSASA----- 293

Query: 772  VSTKKEGKEDDNNDHIPIAQRIK-SPSSNCGSINKNILHKTTXXXXXXXXXXXXXXXXXX 596
             S K+E K DDN D++P++QR+K   SS      KNI+ K+                   
Sbjct: 294  -SVKREPKADDN-DNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKLKTKK 351

Query: 595  XXXXXK------TPPGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPEQEEV 434
                 +       PPGSGGGQKWTTLVH+GVIFPP YKPHG+K+LY GQPV+LTPEQEEV
Sbjct: 352  TMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKILYNGQPVDLTPEQEEV 411

Query: 433  ATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKEKKKQ 254
            ATMFAVMKDTDYA K+ FI+NF  DWR ILGKNH+IKKFE CDFTPIYEWHL EKEKKKQ
Sbjct: 412  ATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQ 471

Query: 253  MTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKNRIK 74
            MT+               KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RIK
Sbjct: 472  MTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIK 531

Query: 73   PRDITINIGKDAPIPECPIPGERW 2
            P DITINIGK APIPECPIPGE W
Sbjct: 532  PSDITINIGKGAPIPECPIPGESW 555


>ref|XP_006857525.1| hypothetical protein AMTR_s00061p00026580, partial [Amborella
            trichopoda] gi|548861621|gb|ERN18992.1| hypothetical
            protein AMTR_s00061p00026580, partial [Amborella
            trichopoda]
          Length = 595

 Score =  357 bits (915), Expect = 6e-96
 Identities = 208/397 (52%), Positives = 244/397 (61%), Gaps = 20/397 (5%)
 Frame = -3

Query: 1132 ENFDDDKPLSFK---NSTSGAVNRSASSHAAKAPQSQKPSLPHSMKPXXXXXXXXXXXXE 962
            ++ DD+KPLS K    S+SGAV          A  S KP+   S +              
Sbjct: 187  DDSDDEKPLSQKFPQKSSSGAV----------AGTSIKPAYDDSDEE------------- 223

Query: 961  KPLLSRFQSKAVNGSGKKDTNSETSA-------------PRVGEKRPHSDTNPAESSSIK 821
            KPL+S+FQ    NGS KK+ N E S              P++  K+P   T+P+ SS +K
Sbjct: 224  KPLVSKFQQ---NGSSKKNLNGELSLKANHILKKRLAGEPQMLAKKPKPSTDPSPSSKVK 280

Query: 820  KAKLSGTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIKSPSSNCGSIN-KNILHKTTXX 644
                    + V  K E S K      D+ D +PI+QR+K  +S  G  + K I  KT   
Sbjct: 281  --------IEVDVKAETSEK-----GDDEDDLPISQRMKKSASVSGQASAKKISVKTKVV 327

Query: 643  XXXXXXXXXXXXXXXXXXXXXKT---PPGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYK 473
                                 K+   PPGSG GQKWTTL HNGVIFPP YKPHG+KMLY 
Sbjct: 328  SSSFKKTGKNTKKEIKKLKQSKSAKGPPGSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYN 387

Query: 472  GQPVNLTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPI 293
            G PV+LTPEQEEVATMFAVMKDT+YA K +F+ENFM+DWR+ILGKNHIIKKFE CD TPI
Sbjct: 388  GLPVDLTPEQEEVATMFAVMKDTEYATKPKFVENFMNDWRVILGKNHIIKKFELCDLTPI 447

Query: 292  YEWHLEEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRG 113
            YEWHL+EKEKKK M+A               KYMWAIVDGVKEKVGNFRVEPPGLFRGRG
Sbjct: 448  YEWHLKEKEKKKHMSAEEKKALKEEKAKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRG 507

Query: 112  EHPKMGKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            EHPKMGKLK RI P+DITINIGK+AP+PECPI G+RW
Sbjct: 508  EHPKMGKLKRRIFPKDITINIGKNAPVPECPILGQRW 544


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  355 bits (912), Expect = 1e-95
 Identities = 190/328 (57%), Positives = 216/328 (65%), Gaps = 8/328 (2%)
 Frame = -3

Query: 961  KPLLSRFQSKAVNGSGKKDTNSETSAPRVGEKRPHSDTNPAESSSIKKAKLSGTSVSVKD 782
            KPL S  +    NG  KKD +    +P+   KRP    N +  SS KK KL   SV  K 
Sbjct: 200  KPLTSTLKP---NGISKKD-DERVKSPKGQNKRPLGQANTSHHSSSKKPKLLDGSVKGKV 255

Query: 781  KQEVSTKKEGKEDDNND------HIPIAQRIKSP--SSNCGSINKNILHKTTXXXXXXXX 626
            KQ VS K E K+DD++D      + P  +R+K    S N  +    ++  +         
Sbjct: 256  KQ-VSVKAEQKDDDDDDNDDDDEYTPTVKRLKKSVSSDNKKASKTKVIPSSRKKATKKAK 314

Query: 625  XXXXXXXXXXXXXXXKTPPGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPE 446
                           K PP SG GQKWTTL HNGVIFPP YKPHG+KMLY G+PV+LTPE
Sbjct: 315  KSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPE 374

Query: 445  QEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKE 266
            QEEVATMFAVMKDTDYA K +FIENFM+DWR+ LGKNH+IKKFE CDFTPIYEWH +EKE
Sbjct: 375  QEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEKE 434

Query: 265  KKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 86
            KKKQMT                KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK
Sbjct: 435  KKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 494

Query: 85   NRIKPRDITINIGKDAPIPECPIPGERW 2
             RI P DITINIGK+AP+PECPIPGERW
Sbjct: 495  KRICPSDITINIGKEAPVPECPIPGERW 522


>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
            topoisomerase I [Zea mays]
          Length = 904

 Score =  354 bits (909), Expect = 3e-95
 Identities = 203/400 (50%), Positives = 240/400 (60%), Gaps = 26/400 (6%)
 Frame = -3

Query: 1123 DDDKPLSFK-NSTSGAVNRSASSHAAKA-PQSQKPS------------LPHSMKPXXXXX 986
            DDDKPL  K NS+  + NR       +  P+ ++P             LP +  P     
Sbjct: 154  DDDKPLGLKINSSRMSSNRVNKPVLQRTVPKVEQPDEDSDDDKPLASRLPSNAGPKSGGD 213

Query: 985  XXXXXXXEKPLLSRFQSKAVNGSGK-----KDTNSETSAPRVGEKRPHSDTNPAESSSIK 821
                   EKPL +RF   A +G+ K     K   S+T+  +   KRP   +N   SS++K
Sbjct: 214  VSEDSEDEKPLAARFSKVAGSGNPKIASSSKGLTSDTNGQQSLGKRPLDSSNQT-SSALK 272

Query: 820  KAKLSGTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIKSPSSNCG-SINKNILHKTTXX 644
            KAK S  S S   ++E+ T         +D+ P+AQR+K   S+ G S  K++  K+   
Sbjct: 273  KAKPSNVSASAIVRREIKT---------DDNTPLAQRLKMGESSKGKSSAKSVFKKSPVS 323

Query: 643  XXXXXXXXXXXXXXXXXXXXXK------TPPGSGGGQKWTTLVHNGVIFPPSYKPHGIKM 482
                                 +       PPGSGGG+KWTTL HNGVIFPP YKPHG+KM
Sbjct: 324  VKKDIKKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKM 383

Query: 481  LYKGQPVNLTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDF 302
            LY G+PV+LTPEQEEVATMFAVMKDTDYA K  FI+NF  DWR +LGKNHIIK FE CDF
Sbjct: 384  LYNGKPVDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDF 443

Query: 301  TPIYEWHLEEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFR 122
            TPIYEWHL EKE+KKQMT                KYMWA+VDGVKEKVGNFRVEPPGLFR
Sbjct: 444  TPIYEWHLREKERKKQMTTEEKKTLREDNLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFR 503

Query: 121  GRGEHPKMGKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            GRGEHPKMGKLK RI P DITINIGK AP+PECPIPGE W
Sbjct: 504  GRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESW 543


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  353 bits (906), Expect = 7e-95
 Identities = 203/392 (51%), Positives = 245/392 (62%), Gaps = 12/392 (3%)
 Frame = -3

Query: 1141 IKHENFDDDKPLS--FKNSTSGAVNRSASSHA-AKAPQSQKPSLPHSMKPXXXXXXXXXX 971
            +  E+ +DDKPLS   K ST+  VN+  ++ A  K   S    +P S +           
Sbjct: 132  VDDEDSEDDKPLSSRIKGSTNN-VNKGVTAPAHVKDEPSDDDEVPLSSR--FAMKSNAGT 188

Query: 970  XXEKPLLSR----FQSKA-VNGSGKKDTNSETSAPRVGEKRPHSDTNPAESSSIKKAKLS 806
               K + S     F SK+ +NGS K D   ++S   V  KRP  +  P+  SS KK KL 
Sbjct: 189  SSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSV--VPTKRPMDNKVPSNHSSAKKPKLL 246

Query: 805  GTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIKSPSSNCGSIN---KNILHKTTXXXXX 635
                + K KQ V+ K E K DD+ DH+ I+QR+K   S+    +   K +    +     
Sbjct: 247  DACTTTKVKQ-VTVKVEQKADDD-DHLTISQRMKKADSSANKSSFAKKKVTKVVSSSLKK 304

Query: 634  XXXXXXXXXXXXXXXXXXKTPPGSGGGQK-WTTLVHNGVIFPPSYKPHGIKMLYKGQPVN 458
                              K  PGS  GQK WTTLVHNGVIFPP YKPHG+K+LYKG+P++
Sbjct: 305  TTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYKPHGVKILYKGKPID 364

Query: 457  LTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHL 278
            LTPEQEEVATMFAVMKDTDY QK QF +NF +DWR +LGKNH+I+K +DCDF PIYEWH 
Sbjct: 365  LTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNHVIQKLDDCDFNPIYEWHQ 424

Query: 277  EEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 98
            +EKEKKKQM+                KYMWAIV+GVKEKVGNFRVEPPGLFRGRGEHPKM
Sbjct: 425  QEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKM 484

Query: 97   GKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            GKLK+RI+P DITINIGKDAPIPECPIPGERW
Sbjct: 485  GKLKSRIRPSDITINIGKDAPIPECPIPGERW 516


>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222860420|gb|EEE97967.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 860

 Score =  352 bits (904), Expect = 1e-94
 Identities = 198/392 (50%), Positives = 242/392 (61%), Gaps = 12/392 (3%)
 Frame = -3

Query: 1141 IKHENFDDDKPLS--FKNSTSGAVNRSASSHAAKAPQSQKPSLPHSMK------PXXXXX 986
            +  ++ +DDKPLS  FK ST+ A          K   S    +P S +            
Sbjct: 118  VDDDDSEDDKPLSSRFKGSTNNANKGVTVPARVKDEHSDDDEVPLSSRFAAKSNAGSSSC 177

Query: 985  XXXXXXXEKPLLSRFQSKAVNGSGKKDTNSETSAPRVGEKRPHSDTNPAESSSIKKAKLS 806
                   +  L+S+ Q   +NGS  KD   ++SA  V  KRP  +  P+  S  KK KLS
Sbjct: 178  KTISSSEKILLVSKIQ---LNGSTAKDKQQKSSA--VPTKRPMDNKVPSNQSFAKKPKLS 232

Query: 805  GTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIKSPSSNCG---SINKNILHKTTXXXXX 635
              S +    ++V+ K E K DD+ DH+ I+QR+K  SS+     S+ +N+    +     
Sbjct: 233  DASTT----KQVTVKAELKADDD-DHLTISQRMKKASSSSNKSLSVKQNVTKVVSFSSKK 287

Query: 634  XXXXXXXXXXXXXXXXXXKTPPGSGGGQK-WTTLVHNGVIFPPSYKPHGIKMLYKGQPVN 458
                              K  PGS  GQK W TLVHNGVIFPP YKPHG+KMLYKG+PV+
Sbjct: 288  TTKNNKKQMQNSKYSKSTKVQPGSSDGQKKWKTLVHNGVIFPPPYKPHGVKMLYKGKPVD 347

Query: 457  LTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHL 278
            LTPEQEEVATMFAVMKDT+Y QK QF++NF +DWR +LGKNH+I+K E CDF PIYEWH 
Sbjct: 348  LTPEQEEVATMFAVMKDTEYVQKPQFLQNFWNDWRTLLGKNHVIQKLEACDFNPIYEWHQ 407

Query: 277  EEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 98
            +EKEKKKQM+                 YMWAIV+GVKEKVGNFRVEPPGLFRGRGEHPKM
Sbjct: 408  KEKEKKKQMSTEEKKAVREEKLKQEEMYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKM 467

Query: 97   GKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            GKLK+RI+P DITINIGKDAPIP+CPIPGERW
Sbjct: 468  GKLKSRIRPSDITINIGKDAPIPKCPIPGERW 499


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  351 bits (901), Expect = 3e-94
 Identities = 205/430 (47%), Positives = 243/430 (56%), Gaps = 53/430 (12%)
 Frame = -3

Query: 1132 ENFDDDKPLSFKNSTSGAVNRSASSHAAK----APQSQKPSLPHSMKPXXXXXXXXXXXX 965
            E+ DD+KPLS +  T G  ++  S+HA K    +   ++P +  S               
Sbjct: 147  ESSDDEKPLSAR--TFGCSSKGKSNHANKEGGDSCSIRRPVIEES----------EDSED 194

Query: 964  EKPLLSRFQSKAV-----------------------NGSGKKDTNSETSAPRVGEKRPHS 854
            EKPL  RF SK+                        NGS  +D     SA  +  KRP  
Sbjct: 195  EKPLSCRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSAS-LSNKRPPG 253

Query: 853  DTNPAESSSIKKAKLSGTSVSVKDKQ--------------EVSTKKEGKE---------D 743
            +      SS+KK KLS    S+ +KQ               +   + GK+         D
Sbjct: 254  EAKSLNQSSVKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQSATSKPKD 313

Query: 742  DNNDHIPIAQRIKSPSSNCGSINKNILHKTTXXXXXXXXXXXXXXXXXXXXXXXKT---P 572
            D++D++PI+QRIK   ++    +  +   +T                       K+   P
Sbjct: 314  DDDDNVPISQRIKKSPASVSKSSVPVKKASTVVSSSLKKVNKNSKKVIKKTAYTKSSKVP 373

Query: 571  PGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPEQEEVATMFAVMKDTDYAQ 392
            PGSG GQKWTTLVHNGVIFPP YKPHG+KMLYK QP+ LTPEQEEVATMFAVM DTDY  
Sbjct: 374  PGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMN 433

Query: 391  KKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKEKKKQMTAXXXXXXXXXXX 212
            K  F ENF  DW+ ILGKNH+I+  EDCDF PIYEWH +EKEKKKQMT            
Sbjct: 434  KPCFKENFFSDWKKILGKNHMIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKL 493

Query: 211  XXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKNRIKPRDITINIGKDAPI 32
                KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RI+PRDITINIGKDAPI
Sbjct: 494  QQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPI 553

Query: 31   PECPIPGERW 2
            PECPIPGERW
Sbjct: 554  PECPIPGERW 563


>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
          Length = 920

 Score =  351 bits (900), Expect = 4e-94
 Identities = 204/430 (47%), Positives = 244/430 (56%), Gaps = 53/430 (12%)
 Frame = -3

Query: 1132 ENFDDDKPLSFKNSTSGAVNRSASSHAAK----APQSQKPSLPHSMKPXXXXXXXXXXXX 965
            E+ DD+KPLS +  T G  ++  S+HA K    +   ++P +  S               
Sbjct: 148  ESSDDEKPLSAR--TFGCSSKGKSNHANKEGGDSCSIRRPVIEES----------EDSED 195

Query: 964  EKPLLSRFQSKAV-----------------------NGSGKKDTNSETSAPRVGEKRPHS 854
            EKPL  RF SK+                        NGS  +D+    SA  +  KRP  
Sbjct: 196  EKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSAS-LSNKRPPG 254

Query: 853  DTNPAESSSIKKAKLSGTSVSVKDKQE-VSTKKEGKEDDNN------------------- 734
            +      SS+KK KLS    S+ +KQ  V  + + ++DD+N                   
Sbjct: 255  EVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTATSKPKD 314

Query: 733  ---DHIPIAQRIKSPSSNCGSINKNILHKTTXXXXXXXXXXXXXXXXXXXXXXXKT---P 572
               D++PI+QRIK   ++    +  +   +T                       K+   P
Sbjct: 315  EDDDNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVP 374

Query: 571  PGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPEQEEVATMFAVMKDTDYAQ 392
            PGSG GQKWTTLVHNGVIFPP YKPHG+KMLYK QP+ LTPEQEEVATMFAVM DTDY  
Sbjct: 375  PGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMN 434

Query: 391  KKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKEKKKQMTAXXXXXXXXXXX 212
            K +F ENF  DW+ +LGKNH I+  EDCDF PIYEWH +EKEKKKQMT            
Sbjct: 435  KPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKL 494

Query: 211  XXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKNRIKPRDITINIGKDAPI 32
                KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RI+PRDITINIGKDAPI
Sbjct: 495  QQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPI 554

Query: 31   PECPIPGERW 2
            PECPIPGERW
Sbjct: 555  PECPIPGERW 564


>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
          Length = 920

 Score =  351 bits (900), Expect = 4e-94
 Identities = 204/430 (47%), Positives = 244/430 (56%), Gaps = 53/430 (12%)
 Frame = -3

Query: 1132 ENFDDDKPLSFKNSTSGAVNRSASSHAAK----APQSQKPSLPHSMKPXXXXXXXXXXXX 965
            E+ DD+KPLS +  T G  ++  S+HA K    +   ++P +  S               
Sbjct: 148  ESSDDEKPLSAR--TFGCSSKGKSNHANKEGGDSCSIRRPVIEES----------EDSED 195

Query: 964  EKPLLSRFQSKAV-----------------------NGSGKKDTNSETSAPRVGEKRPHS 854
            EKPL  RF SK+                        NGS  +D+    SA  +  KRP  
Sbjct: 196  EKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSAS-LSNKRPPG 254

Query: 853  DTNPAESSSIKKAKLSGTSVSVKDKQE-VSTKKEGKEDDNN------------------- 734
            +      SS+KK KLS    S+ +KQ  V  + + ++DD+N                   
Sbjct: 255  EVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTATSKPKD 314

Query: 733  ---DHIPIAQRIKSPSSNCGSINKNILHKTTXXXXXXXXXXXXXXXXXXXXXXXKT---P 572
               D++PI+QRIK   ++    +  +   +T                       K+   P
Sbjct: 315  EDDDNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKTAYTKSSKVP 374

Query: 571  PGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPEQEEVATMFAVMKDTDYAQ 392
            PGSG GQKWTTLVHNGVIFPP YKPHG+KMLYK QP+ LTPEQEEVATMFAVM DTDY  
Sbjct: 375  PGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMN 434

Query: 391  KKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKEKKKQMTAXXXXXXXXXXX 212
            K +F ENF  DW+ +LGKNH I+  EDCDF PIYEWH +EKEKKKQMT            
Sbjct: 435  KPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKL 494

Query: 211  XXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKNRIKPRDITINIGKDAPI 32
                KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RI+PRDITINIGKDAPI
Sbjct: 495  QQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPI 554

Query: 31   PECPIPGERW 2
            PECPIPGERW
Sbjct: 555  PECPIPGERW 564


>gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]
          Length = 949

 Score =  349 bits (896), Expect = 1e-93
 Identities = 206/406 (50%), Positives = 234/406 (57%), Gaps = 32/406 (7%)
 Frame = -3

Query: 1123 DDDKPLSFK-NSTSGAVNRSASSH-----AAKAPQSQKPS---------LPHSMKPXXXX 989
            DD KPL  + N   GA N S S       A K  QS   S         LP +  P    
Sbjct: 191  DDHKPLVQRFNPAKGASNNSTSKPVLFKAAPKIVQSDDDSEDEKPLASRLPTNAAPKSRA 250

Query: 988  XXXXXXXXEKPLLSRFQ------------SKAVNGSGKKDTNSETSAPRVGEKRPHSDTN 845
                     KPL +RF             SK    S  K  +  +SAPR   KRP  + N
Sbjct: 251  STSDSEDE-KPLSARFSRGTAGTSASISNSKDKLPSNNKGPSINSSAPRNSVKRPSDNNN 309

Query: 844  PAESSSIKKAKLSGTSVSVKDKQEVSTKKEGKEDDNNDHIPIAQRIK-SPSSNCGSINKN 668
               SS++KKAK S  S S       S K+E K DDNN  +P+ +++    SS      KN
Sbjct: 310  NQTSSALKKAKSSDASASG------SVKRESKVDDNNS-VPVERKLTPGESSKSKPPVKN 362

Query: 667  ILHKTTXXXXXXXXXXXXXXXXXXXXXXXK----TPPGSGGGQKWTTLVHNGVIFPPSYK 500
            I+ K+                              PPGSGGG+KW+TL HNGVIFPP Y 
Sbjct: 363  IVKKSPLSVKKDNKKFKTKTKKTMKSSQFSKSLRVPPGSGGGKKWSTLEHNGVIFPPPYN 422

Query: 499  PHGIKMLYKGQPVNLTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKK 320
            PHG+KMLY GQPV LTPE+EEVATMFAVMKDT+YA KK FI+NF  DW+ ILGKNHIIKK
Sbjct: 423  PHGVKMLYNGQPVELTPEEEEVATMFAVMKDTEYAAKKTFIDNFFGDWKKILGKNHIIKK 482

Query: 319  FEDCDFTPIYEWHLEEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVE 140
            FE CDFTPIYEWHL EKEKKKQMT+               KYMWA+VDGV+EKVGNFRVE
Sbjct: 483  FELCDFTPIYEWHLREKEKKKQMTSEERKALREEKLKQEEKYMWAVVDGVREKVGNFRVE 542

Query: 139  PPGLFRGRGEHPKMGKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            PPGLFRGRGEHPKMGKLK RI+P DITINIGK  P+PECPI GE W
Sbjct: 543  PPGLFRGRGEHPKMGKLKRRIRPSDITINIGKGTPVPECPIEGESW 588


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  349 bits (896), Expect = 1e-93
 Identities = 197/389 (50%), Positives = 230/389 (59%), Gaps = 12/389 (3%)
 Frame = -3

Query: 1132 ENFDDDKPLSFKNSTSGA------VNRSASSHAAKAPQSQKP---SLPHSMKPXXXXXXX 980
            E+ DD KPLS ++S S +      V++  S    +    +KP     P            
Sbjct: 164  EDSDDGKPLSLRHSASSSKGNTNQVSKEGSKPENEDSDDEKPLSSRFPLKSGVGESTSKA 223

Query: 979  XXXXXEKPLLSRFQSKAVNGSGKKDTNSETSAPRVGEKRPHSDTNPAESSSIKKAKLSGT 800
                 +KPL  + Q    NGS  +D         +  KRP  D   +   S+KK KLS  
Sbjct: 224  YDSDDDKPLAKKLQH---NGSAMRD-GQPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSV 279

Query: 799  SVSVKDKQEVSTKKEGK-EDDNNDHIPIAQRIK-SPSSNCGSIN-KNILHKTTXXXXXXX 629
            +     KQ  S K E K EDD++DH+PI+QRIK SP+S   S + K      +       
Sbjct: 280  TAPTNKKQ-ASVKPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVN 338

Query: 628  XXXXXXXXXXXXXXXXKTPPGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTP 449
                            K PP SG G+KW  L HNGVIFPP YKPHGIKMLYKG+PV+LTP
Sbjct: 339  KKSKKVMKNSKYSKSSKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTP 398

Query: 448  EQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEK 269
            EQEEVATMFAVM DTDY  K +F ENF  DW+ ILGKNH+I+  E+CDF+PIYEWH  EK
Sbjct: 399  EQEEVATMFAVMLDTDYMNKPRFKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEK 458

Query: 268  EKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 89
            EKKKQMT                KYMWA VDG KEKVGNFRVEPPGLFRGRGEHPKMGKL
Sbjct: 459  EKKKQMTTEEKKALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPKMGKL 518

Query: 88   KNRIKPRDITINIGKDAPIPECPIPGERW 2
            K RI+P DITINIGKDAPIPECP+PGERW
Sbjct: 519  KKRIRPCDITINIGKDAPIPECPVPGERW 547


>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  349 bits (896), Expect = 1e-93
 Identities = 203/401 (50%), Positives = 237/401 (59%), Gaps = 27/401 (6%)
 Frame = -3

Query: 1123 DDDKPLSFK-----------NSTSGAVNRSASSHAAKAPQSQKPS------LPHSMK--- 1004
            +D+KPLS +           N+  G +N S +S     P+  + S      +P S K   
Sbjct: 141  EDEKPLSARLFTGLTKGSSNNANKGLINSSPASLPVPKPEINRYSDDSDDEIPLSSKFRL 200

Query: 1003 ---PXXXXXXXXXXXXEKPLLSRFQSKAVNGSGKKDTNSETSAPRVGEKRPHSDTNPAES 833
                             K L+S FQ    NGS  + + S         KRP  +   +  
Sbjct: 201  KANAGTSTVKSYESDDNKTLVSNFQQ---NGSINRGSKSSIKV----NKRPLGEVKSSVQ 253

Query: 832  SSIKKAKLSGTSVSVKDKQEVSTKKEGKEDDNND-HIPIAQRIK--SPSSNCGSINKNIL 662
            SS+KK KLS  S  V +KQ  S K E K DD++D H+PI+QR+K  + S N  S  K  +
Sbjct: 254  SSVKKPKLSDASTPVNNKQ-ASKKAEPKADDSDDDHVPISQRMKKSATSGNKSSTAKQKV 312

Query: 661  HKT-TXXXXXXXXXXXXXXXXXXXXXXXKTPPGSGGGQKWTTLVHNGVIFPPSYKPHGIK 485
             K  +                       K PP SG G+KW TLVHNGVIFPP YKPHG+K
Sbjct: 313  TKVVSSSMKKASKKFKKVVKKSKYSKSSKVPPSSGEGKKWNTLVHNGVIFPPPYKPHGVK 372

Query: 484  MLYKGQPVNLTPEQEEVATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCD 305
            MLYKG+PV+LTPEQEEVATMFAVM DTDY  K +F ENFM DWR ILGKNH+I+  EDCD
Sbjct: 373  MLYKGKPVDLTPEQEEVATMFAVMLDTDYMTKSKFKENFMDDWRKILGKNHVIQNLEDCD 432

Query: 304  FTPIYEWHLEEKEKKKQMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLF 125
            FTPIYEWH  EKEKKK+MTA               KYMWAIV+GVKEKVGNFRVEPP LF
Sbjct: 433  FTPIYEWHQREKEKKKKMTAEEKKVLKEERLKQEEKYMWAIVNGVKEKVGNFRVEPPSLF 492

Query: 124  RGRGEHPKMGKLKNRIKPRDITINIGKDAPIPECPIPGERW 2
            RGRGEHPKMGKLK  I+P DITINIGKDAPIPECPIPGE W
Sbjct: 493  RGRGEHPKMGKLKKCIRPSDITINIGKDAPIPECPIPGESW 533


>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
            gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
            putative [Ricinus communis]
          Length = 891

 Score =  349 bits (895), Expect = 1e-93
 Identities = 188/324 (58%), Positives = 215/324 (66%), Gaps = 4/324 (1%)
 Frame = -3

Query: 961  KPLLSRFQSKAVNGSGKKDTNSETSAPRVGEKRPHSDTNPAESSSIKKAKLSGTSVSVKD 782
            KPL S+ Q    NGS  KD   +  AP +  KRP    N +E SSIKK KLS  S   K 
Sbjct: 215  KPLPSKVQQ---NGSTSKD--KQQKAPLIPTKRPLDKANSSEQSSIKKPKLSAGSTITKV 269

Query: 781  KQEVSTKKEGKEDDNNDHIPIAQRIKSPSSNCGSIN----KNILHKTTXXXXXXXXXXXX 614
            KQ  +T K   E+D+ D IPIAQR KS  S+   ++    K I   ++            
Sbjct: 270  KQ--ATVKA--EEDDPDDIPIAQRKKSLGSSESKLSSAKQKAIKVVSSSFKKPIKKNKKQ 325

Query: 613  XXXXXXXXXXXKTPPGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPEQEEV 434
                         P  + G +KWTTL+HNGVIFPP YKPHGIK+LYKG+PV+L PEQEEV
Sbjct: 326  MKNTKYSKSTKVQPSSTDGQKKWTTLIHNGVIFPPPYKPHGIKILYKGRPVDLAPEQEEV 385

Query: 433  ATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKEKKKQ 254
            ATMFAVMKDTDY QK +F+ENF +DWR +LG+NH+I+K EDCDFTPIYEWH  EKEKKKQ
Sbjct: 386  ATMFAVMKDTDYMQKPKFLENFWNDWRKLLGRNHVIQKLEDCDFTPIYEWHEREKEKKKQ 445

Query: 253  MTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKNRIK 74
            M+                KYMWAIVDGVKEKVGNFRVEPP LFRGRGEHPKMGKLK RI+
Sbjct: 446  MSTEEKKAQKEEKLRQEEKYMWAIVDGVKEKVGNFRVEPPALFRGRGEHPKMGKLKKRIQ 505

Query: 73   PRDITINIGKDAPIPECPIPGERW 2
            P DITINIGKDAPIPECPIPGE W
Sbjct: 506  PSDITINIGKDAPIPECPIPGESW 529


>ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [Amborella trichopoda]
            gi|548860061|gb|ERN17669.1| hypothetical protein
            AMTR_s00059p00193620 [Amborella trichopoda]
          Length = 884

 Score =  348 bits (894), Expect = 2e-93
 Identities = 207/385 (53%), Positives = 240/385 (62%), Gaps = 8/385 (2%)
 Frame = -3

Query: 1132 ENFDDDKPLSFKNSTSGAVNRSASSHAAKAPQSQKPSLPHSMKPXXXXXXXXXXXXEKPL 953
            ++ DD+KPLS K           SS+ A A  S KP+   S +              KPL
Sbjct: 182  DDSDDEKPLSQKFPRK-------SSNGAVAGTSIKPTYDDSDEE-------------KPL 221

Query: 952  LSRFQSKAVNGSGKKDTNSET--SAPRVGEKRPHSDTNPAESSSI--KKAKLSGT-SVSV 788
             S FQ    NGS KK+ N E      ++ +KRP      AE S +  KK K S   S S 
Sbjct: 222  ASNFQR---NGSSKKNLNGELPLKVNQILKKRP------AEESKVLAKKPKPSADPSSSS 272

Query: 787  KDKQEVSTKKEGKE-DDNNDHIPIAQRIKSPSSNCGSIN-KNILHKTTXXXXXXXXXXXX 614
            + K EV+ K E  E  D+ D + I+QR+K  SS  G  + K I  K              
Sbjct: 273  RVKVEVTVKAEKSERGDDEDDLSISQRMKKFSSVSGQASAKKIKTKVVSSSFKKTGKNSK 332

Query: 613  XXXXXXXXXXXKT-PPGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPEQEE 437
                          PPGSG GQKW+TL HNGVIFP  YKPHG+KMLY GQPV+LTPE+EE
Sbjct: 333  KEMKKIKGSKSAKGPPGSGDGQKWSTLEHNGVIFPSPYKPHGVKMLYNGQPVDLTPEKEE 392

Query: 436  VATMFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKEKKK 257
            VATMFAVMKDT+Y  K +FI+NFM+DWR+ILGKNH+IKKFE CDFTPIYEWHL+EKEKKK
Sbjct: 393  VATMFAVMKDTEYETKPKFIDNFMNDWRVILGKNHVIKKFELCDFTPIYEWHLKEKEKKK 452

Query: 256  QMTAXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKNRI 77
            QM+A               KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RI
Sbjct: 453  QMSAEEKKALKEEKAKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI 512

Query: 76   KPRDITINIGKDAPIPECPIPGERW 2
             P+DITINIGK+APIPECPI G+RW
Sbjct: 513  FPKDITINIGKNAPIPECPISGQRW 537


>dbj|BAJ84827.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 946

 Score =  348 bits (892), Expect = 3e-93
 Identities = 194/382 (50%), Positives = 235/382 (61%), Gaps = 5/382 (1%)
 Frame = -3

Query: 1132 ENFDDDKPLSFKNSTSGAVNRSASSHAAKAPQSQKPSLPHSMKPXXXXXXXXXXXXEKPL 953
            ++ +D+KPL+ +  T+ A   S S  +A   + +KP      +                 
Sbjct: 226  DDSEDEKPLASRLPTNAA---SKSRGSASDSEDEKPLSARFSRGTAGTS----------- 271

Query: 952  LSRFQSKAVNGSGKKDTNSETSAPRVGEKRPHSDTNPAESSSIKKAKLSGTSVSVKDKQE 773
            +S   SK    S  K  N+ +SAPR   KRP  D N   SS++KK K S  SVS      
Sbjct: 272  VSISNSKDKLPSNNKGLNNNSSAPRNSVKRP-GDNNNQTSSALKKIKYSDVSVSG----- 325

Query: 772  VSTKKEGKEDDNNDHIPIAQRIKSPSSNCGSIN-KNILHKTTXXXXXXXXXXXXXXXXXX 596
             S K+E K+DD+N  IP+ +++    S+   +  KNI+ K+                   
Sbjct: 326  -SVKRESKDDDSNS-IPVERKLTLGESSKSKLPVKNIVKKSPLSVKKDNKKFKTKTKKAM 383

Query: 595  XXXXXKT----PPGSGGGQKWTTLVHNGVIFPPSYKPHGIKMLYKGQPVNLTPEQEEVAT 428
                       PPGSGGG+KW+TL HNGVIFPP Y PHG+KMLY GQPV LTP++EEVAT
Sbjct: 384  KSSQFSKSLREPPGSGGGKKWSTLEHNGVIFPPLYDPHGVKMLYNGQPVELTPDEEEVAT 443

Query: 427  MFAVMKDTDYAQKKQFIENFMHDWRLILGKNHIIKKFEDCDFTPIYEWHLEEKEKKKQMT 248
            MFAVMKDT+YA KK FI+NF  DW+ ILGKNHIIKKFE CDFTPI+EWHL EKEKKKQMT
Sbjct: 444  MFAVMKDTEYATKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIFEWHLREKEKKKQMT 503

Query: 247  AXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKNRIKPR 68
            +               KYMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLK RI+P 
Sbjct: 504  SEEKKALREEKLKQEEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPS 563

Query: 67   DITINIGKDAPIPECPIPGERW 2
            DITINIGKD P+PECPI GE W
Sbjct: 564  DITINIGKDTPVPECPIEGESW 585