BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00018898
         (336 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   189   3e-46
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   189   3e-46
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ...   188   7e-46
ref|XP_006859089.1| hypothetical protein AMTR_s00070p00019820 [A...   186   3e-45
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I...   184   8e-45
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I...   183   2e-44
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ...   183   2e-44
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I...   181   7e-44
gb|ABK26380.1| unknown [Picea sitchensis]                             181   1e-43
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ...   180   2e-43
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ...   177   1e-42
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8...   177   1e-42
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun...   175   5e-42
gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]        174   8e-42
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g...   173   2e-41
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi...   173   2e-41
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   172   5e-41
ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2...   171   7e-41
ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ...   171   7e-41
ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutr...   171   1e-40

>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  189 bits (480), Expect = 3e-46
 Identities = 87/112 (77%), Positives = 102/112 (91%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARSEQFDM+M LDV TE+YP+  GD+FTMVL+PTLN
Sbjct: 256 FEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTLN 315

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTG++ Q  RK+LADKF+YVMHGKLYKISE++S GQ  KVEIYASFG
Sbjct: 316 LDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFG 367


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  189 bits (480), Expect = 3e-46
 Identities = 87/112 (77%), Positives = 102/112 (91%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARSEQFDM+M LDV TE+YP+  GD+FTMVL+PTLN
Sbjct: 51  FEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTLN 110

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTG++ Q  RK+LADKF+YVMHGKLYKISE++S GQ  KVEIYASFG
Sbjct: 111 LDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFG 162


>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like isoform X1 [Oryza brachyantha]
           gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X2
           [Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X3 [Oryza brachyantha]
           gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X4
           [Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X5 [Oryza brachyantha]
          Length = 146

 Score =  188 bits (477), Expect = 7e-46
 Identities = 87/112 (77%), Positives = 101/112 (90%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARSEQFDM+M LDV TE+YP+  GDKFTMVL+PTLN
Sbjct: 6   FEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVLAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPD G++ Q  RK+LADK++YVMHGKLYKISE+ SGGQ  KVEIYASFG
Sbjct: 66  LDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFG 117


>ref|XP_006859089.1| hypothetical protein AMTR_s00070p00019820 [Amborella trichopoda]
           gi|548863202|gb|ERN20556.1| hypothetical protein
           AMTR_s00070p00019820 [Amborella trichopoda]
          Length = 117

 Score =  186 bits (472), Expect = 3e-45
 Identities = 90/105 (85%), Positives = 99/105 (94%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFTLTK++PDGKKFDKVSRIEARSEQFDMFM LDVNTE+YPL+VGDKFTMVL+PTL+
Sbjct: 6   FEDIFTLTKLNPDGKKFDKVSRIEARSEQFDMFMQLDVNTEVYPLNVGDKFTMVLAPTLS 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKV 315
           LDGTPDTGYF QG RKSLADKFEYVMHGKLYKISE++  G N+KV
Sbjct: 66  LDGTPDTGYFTQGGRKSLADKFEYVMHGKLYKISEDS--GTNVKV 108


>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 146

 Score =  184 bits (468), Expect = 8e-45
 Identities = 85/112 (75%), Positives = 99/112 (88%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + +IDPDGKKFD+V+RIEARSEQF M+M LDV T +YP+H GDKFTMVL+PTLN
Sbjct: 6   FEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVLAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGY+ Q  RK+LADK++YVMHGKLYKISE++SGGQ  KVE YASFG
Sbjct: 66  LDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFG 117


>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like isoform 1 [Solanum lycopersicum]
           gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           isoform 2 [Solanum lycopersicum]
          Length = 145

 Score =  183 bits (465), Expect = 2e-44
 Identities = 88/112 (78%), Positives = 102/112 (91%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T+ DPDGKKFD+V+RIEARSEQFDMFM LDVNTEIYP+ V DKF MVL+ TLN
Sbjct: 6   FEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVLASTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGYF+QGN+KSLADKFEYVMHGKLY+ISEE S G+++K +I+ SFG
Sbjct: 66  LDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGS-GKHVKADIFVSFG 116


>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Solanum tuberosum]
          Length = 145

 Score =  183 bits (464), Expect = 2e-44
 Identities = 87/112 (77%), Positives = 102/112 (91%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T+ DPDGKKFD+V+RIEARSEQFDMFM LD+NTEIYP+ V DKF MVL+ TLN
Sbjct: 6   FEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVLASTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGYF+QGN+KSLADKFEYVMHGKLY+ISEE S G+++K +I+ SFG
Sbjct: 66  LDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGS-GKHVKADIFVSFG 116


>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 144

 Score =  181 bits (460), Expect = 7e-44
 Identities = 85/112 (75%), Positives = 101/112 (90%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF +++IDPDGKKFD+V+RIEARSEQ  M+M LDV T++YP+H GDKFTMVL+PTLN
Sbjct: 6   FEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVLAPTLN 63

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGY+ Q  RK+LADK++YVMHGKLYKISE++SGGQ  KVEIYASFG
Sbjct: 64  LDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFG 115


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  181 bits (458), Expect = 1e-43
 Identities = 86/112 (76%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T+IDPDGKKFDKVSRIEARSEQFDM+M LDVN ++YP+ VG+KF + L+PTLN
Sbjct: 6   FEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVALAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPD GYF+QG RKSLADK+EYVM+GKLY +SEE SG  N+KVEI ASFG
Sbjct: 66  LDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGA-NVKVEINASFG 116


>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Oryza brachyantha]
          Length = 147

 Score =  180 bits (456), Expect = 2e-43
 Identities = 84/113 (74%), Positives = 101/113 (89%), Gaps = 1/113 (0%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEAR+EQ +++M LDV T++YP+H GDKFTMVL PTLN
Sbjct: 6   FEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVLVPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEE-ASGGQNIKVEIYASFG 336
           LDGTPDTG+F Q  RK+LADK+EYVMHGKLYKISE+  + GQN KVE+YASFG
Sbjct: 66  LDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFG 118


>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
           [Zea mays]
          Length = 146

 Score =  177 bits (449), Expect = 1e-42
 Identities = 79/112 (70%), Positives = 96/112 (85%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FED F +T++DPDGKKFD+VSR+EARSEQ DM+M LDV T++YP+H G+KF MV++PTLN
Sbjct: 6   FEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGY+ Q  RK+LAD +EYVM GKLYKISE+ S  QN KVE+YASFG
Sbjct: 66  LDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFG 117


>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
           mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
           gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 1 [Zea mays]
           gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 2 [Zea mays]
           gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 3 [Zea mays]
           gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 4 [Zea mays]
          Length = 146

 Score =  177 bits (449), Expect = 1e-42
 Identities = 79/112 (70%), Positives = 96/112 (85%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FED F +T++DPDGKKFD+VSR+EARSEQ DM+M LDV T++YP+H G+KF MV++PTLN
Sbjct: 6   FEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGY+ Q  RK+LAD +EYVM GKLYKISE+ S  QN KVE+YASFG
Sbjct: 66  LDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFG 117


>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
           [Aegilops tauschii]
          Length = 220

 Score =  175 bits (444), Expect = 5e-42
 Identities = 82/114 (71%), Positives = 99/114 (86%), Gaps = 2/114 (1%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF +T+IDPDGKKFD+V+RIEARSEQ +M+M LD+ T++YP+H+GDKFTMVL+PTLN
Sbjct: 6   FEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVLAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQN--IKVEIYASFG 336
           LDGTPDTGY+ Q  RK+LADK++YVMHGKLYKISE+ S       KVEIYASFG
Sbjct: 66  LDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFG 119


>gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]
          Length = 145

 Score =  174 bits (442), Expect = 8e-42
 Identities = 83/112 (74%), Positives = 98/112 (87%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + K+DPDGKKFDKV+RIEARS+  DMFMHLDVN+EIYP+HVGDKFTM L+ TLN
Sbjct: 7   FEDIFVVDKLDPDGKKFDKVTRIEARSQNCDMFMHLDVNSEIYPMHVGDKFTMALAHTLN 66

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGY+  G RKSLADK+EYVMHGKLYK+S++ S G+ +K EIY S+G
Sbjct: 67  LDGTPDTGYYTPG-RKSLADKYEYVMHGKLYKVSDDGS-GKGLKAEIYVSYG 116


>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
           gi|29244685|gb|AAO73277.1| putative RNA polymerase
           [Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
           putative RNA polymerase [Oryza sativa Japonica Group]
           gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
           Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
           protein OsJ_13351 [Oryza sativa Japonica Group]
           gi|215692970|dbj|BAG88390.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 148

 Score =  173 bits (439), Expect = 2e-41
 Identities = 83/114 (72%), Positives = 100/114 (87%), Gaps = 2/114 (1%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARS+QFDM+M LDV T++YP+H GD+FTMVL PTLN
Sbjct: 6   FEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEA-SGGQNI-KVEIYASFG 336
           LDGTPD+ +F Q  RK+LADK+EYVMHGKLYKISE+  +  QN  KVE+YASFG
Sbjct: 66  LDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFG 119


>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
          Length = 215

 Score =  173 bits (439), Expect = 2e-41
 Identities = 83/114 (72%), Positives = 100/114 (87%), Gaps = 2/114 (1%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARS+QFDM+M LDV T++YP+H GD+FTMVL PTLN
Sbjct: 73  FEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTLN 132

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEA-SGGQNI-KVEIYASFG 336
           LDGTPD+ +F Q  RK+LADK+EYVMHGKLYKISE+  +  QN  KVE+YASFG
Sbjct: 133 LDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFG 186


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  172 bits (435), Expect = 5e-41
 Identities = 84/112 (75%), Positives = 94/112 (83%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           F DIF + +IDPDGKKFDKVSRIEA+SEQ DM+M LDVNTEIYP+H G+KF M L+ TL+
Sbjct: 6   FGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLASTLD 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGY+ Q  RKSLADKFEYVMHGKLYKISEE S G N+K  IY SFG
Sbjct: 66  LDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGS-GPNVKGVIYVSFG 116


>ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|297817262|ref|XP_002876514.1| hypothetical protein
           ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata]
           gi|565468254|ref|XP_006292007.1| hypothetical protein
           CARUB_v10018195mg [Capsella rubella]
           gi|75335784|sp|Q9M1A8.1|RPB8B_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           8B; AltName: Full=RNA polymerase Rpb8
           gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis
           thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II
           subunit, putative [Arabidopsis thaliana]
           gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis
           thaliana] gi|30793811|gb|AAP40358.1| unknown protein
           [Arabidopsis thaliana] gi|297322352|gb|EFH52773.1|
           hypothetical protein ARALYDRAFT_907465 [Arabidopsis
           lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA
           polymerase Rpb8 [Arabidopsis thaliana]
           gi|482560714|gb|EOA24905.1| hypothetical protein
           CARUB_v10018195mg [Capsella rubella]
          Length = 146

 Score =  171 bits (434), Expect = 7e-41
 Identities = 79/112 (70%), Positives = 94/112 (83%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + K+DPDGKKFDKV+R+EARS   +MFMHLDVNTE+YPL VGDKFT+ ++PTLN
Sbjct: 8   FEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPTLN 67

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGYF  G +K+LADK+EY+MHGKLYKISE    G+  K E+Y SFG
Sbjct: 68  LDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER--DGKTPKAELYVSFG 117


>ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
           putative [Ricinus communis] gi|223530164|gb|EEF32075.1|
           DNA-directed RNA polymerases I, II, and III 17.1 kDa
           polypeptide, putative [Ricinus communis]
          Length = 146

 Score =  171 bits (434), Expect = 7e-41
 Identities = 82/112 (73%), Positives = 96/112 (85%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + K+DPDGKKFDKVSRIEA S+  DMFMHLDVNTEIYP+ VGDKFTM L+ TLN
Sbjct: 7   FEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMALAHTLN 66

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGY+ QG RK+LADK+EY+M+GKLYKISEE S G+ +K E+  S+G
Sbjct: 67  LDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGS-GKAVKAEMLVSYG 117


>ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutrema salsugineum]
           gi|557098120|gb|ESQ38556.1| hypothetical protein
           EUTSA_v10029046mg [Eutrema salsugineum]
          Length = 146

 Score =  171 bits (432), Expect = 1e-40
 Identities = 78/112 (69%), Positives = 94/112 (83%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + K+DPDGKKFDKV+R+EARS   +MFMHLDVNTE+YP+ VGDKFTM ++PTLN
Sbjct: 8   FEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPMAVGDKFTMAMAPTLN 67

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFG 336
           LDGTPDTGYF  G +K+LADK+EY+MHGKLYKI+E    G+  K E+Y SFG
Sbjct: 68  LDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKITER--DGKTPKAELYVSFG 117